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The map label for this gene is srfC

Identifier: 16764939

GI number: 16764939

Start: 1684073

End: 1686217

Strand: Direct

Name: srfC

Synonym: STM1595

Alternate gene names: NA

Gene position: 1684073-1686217 (Clockwise)

Preceding gene: 16764938

Following gene: 16764946

Centisome position: 34.67

GC content: 57.02

Gene sequence:

>2145_bases
ATGACAAAACCGTTAAACACCACCCAGGCTGTTATCGAGTGGGTTAACAACACGCGCCGTTACGCAACGCGACTGGATGA
CGAAGCCGACGCTCTGCTGGCGCAACTTACGCTTGCCGCGGCGGATGAGTCAGCGCTCAACGCCGCCTGCGCATCACATG
GCTGCGTTGGTCTGTACGGGTATGCGCAATCCGCAAAAGCGCATCTGTTAACGACGCTATGCGGTAACGAGAATGGCAAG
CTGGAAATTATCACGCCGGACCGTGACTATGATTATTTCAGCCACATCAATCCGGGTCATGCGCCAGCGAATATGGCTAT
TCGCTTTACGCGCGACATTTTTTCAAACGAGAGCGGCTGGCCGTTGCGCCTGCGCTTGATCAGTGAAGCCGAACTGGTGC
AGATCTTTATTGCCTGGACCAGCTCGTCCCCCGTTTGTCGCCAGGTCGAAAAATCCATTATCACATCACGCCTGGAGAAA
TGGCAATCGCTTCGCCAACCGCAGCCCGTCCCCGGCGTTACCGCTGAAGAGGTAGCGACCATCGCGAGTTTCTGGCGCTC
TTGCCTGCCGTCCGCCAGACAACATATTGATGATGCGACATGGCAACACTTTGCCTCGCTCTTGCCTGCGCTGGATCTCA
CGACACGGGCGCACGCCTGGGCATTACTGTGGGGAGAGCAACCGGAGATCACCCAGCAATGGCTGGCGCTGGCGCATATG
TTGCAACAAACCGGCCATGCCGGGGAACTGGCGGCGCCGCTCAGCCTGCTGGTCGATCATTTTGGCTTACCGGCGGAAAA
CTTCCTGACGCAAATGGCGCTAACCGCCAACGATACGCAAAGCGATGTGGTGGTGCATCCGGTTAAGGAAGGCCGACTGC
TCAATGCGGTCAGCCTTTCGCTTGATTCTCTGGCGCTGCTTACCCGCGAACTGGTGCTAAGCGTTGAAAACAACGTACTG
GATAACGTAGATTTACTGGATATTCCGGTCGCGCCAGACAGTCATCCTCATCCGTTATGGCGGGCGAAATTAGGTTGGAT
GCTGGCCCATTACCGCCAACAGGTACAGCCCGATGTTCTGGTGATTTGCAATGCTCTGGCATCTCGCTCGCAAACGTCCA
CTGCCGCCCATCACTTACTGGAGTGGGTTAACGCCACGCAGCCGCAGCATGAATCAGCGTTACCCGGCGTCGTCTGGGCT
ATTACTCCACAGGATGCCCGTTTTGCCACCCAGCAAAATCTGGATGAAGCCGTCCAGCAGTTGATGGGTAAACCTGGCGT
GCATTGGGGAACGTTGCAGGCGCTGGATAAACACAGTATGCAGCGTTTGGTGGAATGGTTATCGCAGGCGACATCGGCAC
CACAGCGACAGGCGCGCTTACAGGCGTTACGCGAACAACTGCGAGGCCGCGTGCGCGATCTGTTACCGATGTTTGATGAC
GCGCGGCTACCGGTTGAAACCGTGATCCGGCGTCTTCAGGCCCAGGCCGCCAGACATGGCGACCTGCTGGCCGGGCTGTT
ACCGCCGGTACAGAACTTCGAAGCGTTGCTGAGCACCCGACAGTCACGAGAAGAACAGGTCTGCGGTTTATTTAATGACG
CGATCGATCTCTTTGCCGACGAACCAACGCGCGCTTCAGCGTCAGAAGGTCACGAAACAGGCTACCAGGCGCACAAAATG
TGGATCAATCATCTGCGCCAGTGGGCCCACTGCCGGGATAATGCGCAGCGTCTGGGACTGGAACCGCAGATGCTCAACGC
CGTGGCGGAGATTTTAATTACCGCCAGCTATCGCCTCGGTTTACCTCAGCAGTTACAGAAAACCATGCAGCGCGAGGAGG
TGAGCGGCGCGCAGCTTCATGCCATCATTGGTAACTTCATCGCCTGGCTCGGCTACGCCAATATCGAGGAGGCCCAACGC
CCGGCCAGCCGCGTTCAGAAAGGCGCAGCCATTTTCGCCGCAACACCGCGTTCGACAATGTTGCGTCTAACAAAGCTTGA
CGAACAGCCCGTTCATGCCGCCAGCCGCTATGTCTATGACTGGCTTGTTGCGCTGTATACCCTGGCCAATGAGAACGCAG
GATATCGGCATCCGCAGGACGTTACCGACGTAGACAGAGCGCAATTAATTGCCCTGATAGCCTGA

Upstream 100 bases:

>100_bases
CGGTCGCCGCCGATGCGCTGACATTAAAATTGAATACGCTGGCTGACCGTCGCCACAGCGGCAGCCACTACTGGATAGAT
AGTGGGAGTGTATACCTGAA

Downstream 100 bases:

>100_bases
CCTGGCGGAAAAACCATGCCCGGTAACCTGTATCGGGCTTGAGGTCAGAAAAGCGAAAACAGCAATGCGACGGGGAAACT
TATCGGCCATGTCGCGCCAA

Product: virulence protein

Products: NA

Alternate protein names: Virulence Effector SrfC; Virulence Protein; Virulence Effector Protein; Virulence Factor SrfC-Like Protein; Type III Secretion System Effector; HopL1 Protein; Protein Conserved In Bacteria Virulence Factor; Virulence Factor SrfC; Type III Effector Protein; Coiled-Coil Structure

Number of amino acids: Translated: 714; Mature: 713

Protein sequence:

>714_residues
MTKPLNTTQAVIEWVNNTRRYATRLDDEADALLAQLTLAAADESALNAACASHGCVGLYGYAQSAKAHLLTTLCGNENGK
LEIITPDRDYDYFSHINPGHAPANMAIRFTRDIFSNESGWPLRLRLISEAELVQIFIAWTSSSPVCRQVEKSIITSRLEK
WQSLRQPQPVPGVTAEEVATIASFWRSCLPSARQHIDDATWQHFASLLPALDLTTRAHAWALLWGEQPEITQQWLALAHM
LQQTGHAGELAAPLSLLVDHFGLPAENFLTQMALTANDTQSDVVVHPVKEGRLLNAVSLSLDSLALLTRELVLSVENNVL
DNVDLLDIPVAPDSHPHPLWRAKLGWMLAHYRQQVQPDVLVICNALASRSQTSTAAHHLLEWVNATQPQHESALPGVVWA
ITPQDARFATQQNLDEAVQQLMGKPGVHWGTLQALDKHSMQRLVEWLSQATSAPQRQARLQALREQLRGRVRDLLPMFDD
ARLPVETVIRRLQAQAARHGDLLAGLLPPVQNFEALLSTRQSREEQVCGLFNDAIDLFADEPTRASASEGHETGYQAHKM
WINHLRQWAHCRDNAQRLGLEPQMLNAVAEILITASYRLGLPQQLQKTMQREEVSGAQLHAIIGNFIAWLGYANIEEAQR
PASRVQKGAAIFAATPRSTMLRLTKLDEQPVHAASRYVYDWLVALYTLANENAGYRHPQDVTDVDRAQLIALIA

Sequences:

>Translated_714_residues
MTKPLNTTQAVIEWVNNTRRYATRLDDEADALLAQLTLAAADESALNAACASHGCVGLYGYAQSAKAHLLTTLCGNENGK
LEIITPDRDYDYFSHINPGHAPANMAIRFTRDIFSNESGWPLRLRLISEAELVQIFIAWTSSSPVCRQVEKSIITSRLEK
WQSLRQPQPVPGVTAEEVATIASFWRSCLPSARQHIDDATWQHFASLLPALDLTTRAHAWALLWGEQPEITQQWLALAHM
LQQTGHAGELAAPLSLLVDHFGLPAENFLTQMALTANDTQSDVVVHPVKEGRLLNAVSLSLDSLALLTRELVLSVENNVL
DNVDLLDIPVAPDSHPHPLWRAKLGWMLAHYRQQVQPDVLVICNALASRSQTSTAAHHLLEWVNATQPQHESALPGVVWA
ITPQDARFATQQNLDEAVQQLMGKPGVHWGTLQALDKHSMQRLVEWLSQATSAPQRQARLQALREQLRGRVRDLLPMFDD
ARLPVETVIRRLQAQAARHGDLLAGLLPPVQNFEALLSTRQSREEQVCGLFNDAIDLFADEPTRASASEGHETGYQAHKM
WINHLRQWAHCRDNAQRLGLEPQMLNAVAEILITASYRLGLPQQLQKTMQREEVSGAQLHAIIGNFIAWLGYANIEEAQR
PASRVQKGAAIFAATPRSTMLRLTKLDEQPVHAASRYVYDWLVALYTLANENAGYRHPQDVTDVDRAQLIALIA
>Mature_713_residues
TKPLNTTQAVIEWVNNTRRYATRLDDEADALLAQLTLAAADESALNAACASHGCVGLYGYAQSAKAHLLTTLCGNENGKL
EIITPDRDYDYFSHINPGHAPANMAIRFTRDIFSNESGWPLRLRLISEAELVQIFIAWTSSSPVCRQVEKSIITSRLEKW
QSLRQPQPVPGVTAEEVATIASFWRSCLPSARQHIDDATWQHFASLLPALDLTTRAHAWALLWGEQPEITQQWLALAHML
QQTGHAGELAAPLSLLVDHFGLPAENFLTQMALTANDTQSDVVVHPVKEGRLLNAVSLSLDSLALLTRELVLSVENNVLD
NVDLLDIPVAPDSHPHPLWRAKLGWMLAHYRQQVQPDVLVICNALASRSQTSTAAHHLLEWVNATQPQHESALPGVVWAI
TPQDARFATQQNLDEAVQQLMGKPGVHWGTLQALDKHSMQRLVEWLSQATSAPQRQARLQALREQLRGRVRDLLPMFDDA
RLPVETVIRRLQAQAARHGDLLAGLLPPVQNFEALLSTRQSREEQVCGLFNDAIDLFADEPTRASASEGHETGYQAHKMW
INHLRQWAHCRDNAQRLGLEPQMLNAVAEILITASYRLGLPQQLQKTMQREEVSGAQLHAIIGNFIAWLGYANIEEAQRP
ASRVQKGAAIFAATPRSTMLRLTKLDEQPVHAASRYVYDWLVALYTLANENAGYRHPQDVTDVDRAQLIALIA

Specific function: Unknown

COG id: COG4458

COG function: function code S; Uncharacterized protein conserved in bacteria, putative virulence factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 79532; Mature: 79401

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKPLNTTQAVIEWVNNTRRYATRLDDEADALLAQLTLAAADESALNAACASHGCVGLYG
CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEECC
YAQSAKAHLLTTLCGNENGKLEIITPDRDYDYFSHINPGHAPANMAIRFTRDIFSNESGW
CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCCCHHHHEEHHHHHCCCCCC
PLRLRLISEAELVQIFIAWTSSSPVCRQVEKSIITSRLEKWQSLRQPQPVPGVTAEEVAT
EEEEEEECHHHEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
IASFWRSCLPSARQHIDDATWQHFASLLPALDLTTRAHAWALLWGEQPEITQQWLALAHM
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHH
LQQTGHAGELAAPLSLLVDHFGLPAENFLTQMALTANDTQSDVVVHPVKEGRLLNAVSLS
HHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHH
LDSLALLTRELVLSVENNVLDNVDLLDIPVAPDSHPHPLWRAKLGWMLAHYRQQVQPDVL
HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHH
VICNALASRSQTSTAAHHLLEWVNATQPQHESALPGVVWAITPQDARFATQQNLDEAVQQ
HHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCHHHHHHCCHHHHHHH
LMGKPGVHWGTLQALDKHSMQRLVEWLSQATSAPQRQARLQALREQLRGRVRDLLPMFDD
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
ARLPVETVIRRLQAQAARHGDLLAGLLPPVQNFEALLSTRQSREEQVCGLFNDAIDLFAD
CCCCHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
EPTRASASEGHETGYQAHKMWINHLRQWAHCRDNAQRLGLEPQMLNAVAEILITASYRLG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
LPQQLQKTMQREEVSGAQLHAIIGNFIAWLGYANIEEAQRPASRVQKGAAIFAATPRSTM
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCHHHH
LRLTKLDEQPVHAASRYVYDWLVALYTLANENAGYRHPQDVTDVDRAQLIALIA
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
TKPLNTTQAVIEWVNNTRRYATRLDDEADALLAQLTLAAADESALNAACASHGCVGLYG
CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEECC
YAQSAKAHLLTTLCGNENGKLEIITPDRDYDYFSHINPGHAPANMAIRFTRDIFSNESGW
CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCCCHHHHEEHHHHHCCCCCC
PLRLRLISEAELVQIFIAWTSSSPVCRQVEKSIITSRLEKWQSLRQPQPVPGVTAEEVAT
EEEEEEECHHHEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
IASFWRSCLPSARQHIDDATWQHFASLLPALDLTTRAHAWALLWGEQPEITQQWLALAHM
HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHH
LQQTGHAGELAAPLSLLVDHFGLPAENFLTQMALTANDTQSDVVVHPVKEGRLLNAVSLS
HHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHH
LDSLALLTRELVLSVENNVLDNVDLLDIPVAPDSHPHPLWRAKLGWMLAHYRQQVQPDVL
HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHH
VICNALASRSQTSTAAHHLLEWVNATQPQHESALPGVVWAITPQDARFATQQNLDEAVQQ
HHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCHHHHHHCCHHHHHHH
LMGKPGVHWGTLQALDKHSMQRLVEWLSQATSAPQRQARLQALREQLRGRVRDLLPMFDD
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
ARLPVETVIRRLQAQAARHGDLLAGLLPPVQNFEALLSTRQSREEQVCGLFNDAIDLFAD
CCCCHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
EPTRASASEGHETGYQAHKMWINHLRQWAHCRDNAQRLGLEPQMLNAVAEILITASYRLG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
LPQQLQKTMQREEVSGAQLHAIIGNFIAWLGYANIEEAQRPASRVQKGAAIFAATPRSTM
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEECCHHHH
LRLTKLDEQPVHAASRYVYDWLVALYTLANENAGYRHPQDVTDVDRAQLIALIA
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA