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The map label for this gene is ynfA

Identifier: 16764849

GI number: 16764849

Start: 1581800

End: 1582126

Strand: Direct

Name: ynfA

Synonym: STM1504

Alternate gene names: 16764849

Gene position: 1581800-1582126 (Clockwise)

Preceding gene: 161353600

Following gene: 16764850

Centisome position: 32.56

GC content: 56.57

Gene sequence:

>327_bases
ATGCTAAAGACGACTCTGCTTTTCTTTGTCACCGCCCTCTGTGAAATCATTGGATGTTTTCTTCCCTGGCTATGGCTTAA
GCGCGGCGCCAGCGTGTGGTGGCTTCTGCCCGCCGCTGCGTCACTTGCGTTATTCGTCTGGCTTTTGACCTTGCATCCGG
CGGCGAGTGGGCGGGTTTATGCGGCTTACGGTGGGGTATATGTCTGTACTGCGCTCCTGTGGTTACGTGTTGTCGATGGC
GTCCGGCTCACGGTTTATGACTGGTGCGGCGCGCTGATCGCGCTGTGTGGAATGCTGATTATCGTCGTCGGATGGGGACG
TACGTAA

Upstream 100 bases:

>100_bases
ACACCAATCCTTATGCCTGGCATATACACAAGAATGGCCGGATAACCGTAACGATATTCTGTTGTATTATCACTTATCAT
TTCGTAACCAAATGAATCTC

Downstream 100 bases:

>100_bases
CATTGCCGCGCGACCAGAACATTTTGTGATCTGGCAGCGCTTTTTACATCAATATACTTGTATGGTAGTAGCTCAGTTGG
GTAAATTTCCTGCATCCCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 108; Mature: 108

Protein sequence:

>108_residues
MLKTTLLFFVTALCEIIGCFLPWLWLKRGASVWWLLPAAASLALFVWLLTLHPAASGRVYAAYGGVYVCTALLWLRVVDG
VRLTVYDWCGALIALCGMLIIVVGWGRT

Sequences:

>Translated_108_residues
MLKTTLLFFVTALCEIIGCFLPWLWLKRGASVWWLLPAAASLALFVWLLTLHPAASGRVYAAYGGVYVCTALLWLRVVDG
VRLTVYDWCGALIALCGMLIIVVGWGRT
>Mature_108_residues
MLKTTLLFFVTALCEIIGCFLPWLWLKRGASVWWLLPAAASLALFVWLLTLHPAASGRVYAAYGGVYVCTALLWLRVVDG
VRLTVYDWCGALIALCGMLIIVVGWGRT

Specific function: Unknown

COG id: COG1742

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0060 family

Homologues:

Organism=Escherichia coli, GI1787865, Length=108, Percent_Identity=88.8888888888889, Blast_Score=189, Evalue=3e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YNFA_SALA4 (B5F6E1)

Other databases:

- EMBL:   CP001138
- RefSeq:   YP_002146539.1
- GeneID:   6795919
- GenomeReviews:   CP001138_GR
- KEGG:   sea:SeAg_B1668
- HOGENOM:   HBG313568
- OMA:   TRWDVAG
- ProtClustDB:   PRK02237
- HAMAP:   MF_00010
- InterPro:   IPR003844

Pfam domain/function: PF02694 UPF0060

EC number: NA

Molecular weight: Translated: 11948; Mature: 11948

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xde1f044)-; HASH(0xed02d78)-; HASH(0xe17ff2c)-; HASH(0xc0648a4)-;

Cys/Met content:

4.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
4.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKTTLLFFVTALCEIIGCFLPWLWLKRGASVWWLLPAAASLALFVWLLTLHPAASGRVY
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCEE
AAYGGVYVCTALLWLRVVDGVRLTVYDWCGALIALCGMLIIVVGWGRT
EHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCH
>Mature Secondary Structure
MLKTTLLFFVTALCEIIGCFLPWLWLKRGASVWWLLPAAASLALFVWLLTLHPAASGRVY
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCEE
AAYGGVYVCTALLWLRVVDGVRLTVYDWCGALIALCGMLIIVVGWGRT
EHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA