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The map label for this gene is ynfC

Identifier: 161353600

GI number: 161353600

Start: 1579959

End: 1580669

Strand: Direct

Name: ynfC

Synonym: STM1501

Alternate gene names: 161353600

Gene position: 1579959-1580669 (Clockwise)

Preceding gene: 16764834

Following gene: 16764849

Centisome position: 32.53

GC content: 50.77

Gene sequence:

>711_bases
GTGAAGAAACCCCTTTTACTGACGTTATTGTGCATGATACTGGCAGGTTGTGATAACCCGAAATCCCTTGAGTCTTTTAC
GCCGGAAATGGCCAGTTTTTCGAACGAATTTGATTTTGATCCATTACGTGGTCCGGTAAAGGATTTCAGCCAGACATTGA
TGAGTGAGAATGGCGAAGTGGCGAAGCAGGTCACCGGTACGCTTTCACAGGAAGGCTGTTTTGATACGCTTGAGTTACAC
GATCTGGAGAATAATACGGGGCTGGCACTCGTGCTGGATGCCAATTATTACCGGGATGCTCAGACGCTGGAAAAAAAGGT
GCAGTTACAGGGGAAGTGCCAGCTGGCGGCGTTGCCTTCGGCGGGCGTGACCTGGGAAACGGACGACAACGGTTTTGTGG
TATCGGCGACGGGCAAAGAGATGAAGGTCGAGTACCGCTATGATAGCGAAGGCTATCCGTTAGGTAAGACAACCATAAAC
TCGCAGAATACGCTCTCTGTGACGGCAAAACCCTCCGCGGACCCGCGTAAAAAGCTGGATTATACGGCAGTCAGCCGGGT
GGATGATCGACAGGTCGGCAACGTCACACAGAGCTGCGAATATGATGCGTACGCGAACCCTGTTGACTGCCGGCTTGTTA
TCGTCGATGAGAGCGTTAAGCCGGCAGTGTCCCACCATTACACCATTAAAAATCGTATCGATTACTACTAA

Upstream 100 bases:

>100_bases
CTCCTGTGATTAATGACGATGTTCTAAGCTTAGCATTTTTCGTGTAAATAACTGTATTTGCTAATATGATGATAAATATC
TTTTCATCCTGGTGATACGT

Downstream 100 bases:

>100_bases
ACCGGGCGCGGTGCGACTCTCCGTGACTACCGCGCCGCGCTTACTGCGCGGTGGGTTTCAGGAGTGTAGAACCGGACGTT
TTATGTTCATCCAGATACTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MKKPLLLTLLCMILAGCDNPKSLESFTPEMASFSNEFDFDPLRGPVKDFSQTLMSENGEVAKQVTGTLSQEGCFDTLELH
DLENNTGLALVLDANYYRDAQTLEKKVQLQGKCQLAALPSAGVTWETDDNGFVVSATGKEMKVEYRYDSEGYPLGKTTIN
SQNTLSVTAKPSADPRKKLDYTAVSRVDDRQVGNVTQSCEYDAYANPVDCRLVIVDESVKPAVSHHYTIKNRIDYY

Sequences:

>Translated_236_residues
MKKPLLLTLLCMILAGCDNPKSLESFTPEMASFSNEFDFDPLRGPVKDFSQTLMSENGEVAKQVTGTLSQEGCFDTLELH
DLENNTGLALVLDANYYRDAQTLEKKVQLQGKCQLAALPSAGVTWETDDNGFVVSATGKEMKVEYRYDSEGYPLGKTTIN
SQNTLSVTAKPSADPRKKLDYTAVSRVDDRQVGNVTQSCEYDAYANPVDCRLVIVDESVKPAVSHHYTIKNRIDYY
>Mature_236_residues
MKKPLLLTLLCMILAGCDNPKSLESFTPEMASFSNEFDFDPLRGPVKDFSQTLMSENGEVAKQVTGTLSQEGCFDTLELH
DLENNTGLALVLDANYYRDAQTLEKKVQLQGKCQLAALPSAGVTWETDDNGFVVSATGKEMKVEYRYDSEGYPLGKTTIN
SQNTLSVTAKPSADPRKKLDYTAVSRVDDRQVGNVTQSCEYDAYANPVDCRLVIVDESVKPAVSHHYTIKNRIDYY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0257 family

Homologues:

Organism=Escherichia coli, GI87081939, Length=236, Percent_Identity=72.4576271186441, Blast_Score=362, Evalue=1e-101,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YNFC_SALA4 (B5F6E4)

Other databases:

- EMBL:   CP001138
- RefSeq:   YP_002146542.1
- PRIDE:   B5F6E4
- GeneID:   6796665
- GenomeReviews:   CP001138_GR
- KEGG:   sea:SeAg_B1671
- HOGENOM:   HBG416184
- OMA:   DGYPLGK
- ProtClustDB:   PRK02939
- HAMAP:   MF_01065
- InterPro:   IPR010646
- ProDom:   PD120112

Pfam domain/function: PF06788 UPF0257

EC number: NA

Molecular weight: Translated: 26203; Mature: 26203

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKPLLLTLLCMILAGCDNPKSLESFTPEMASFSNEFDFDPLRGPVKDFSQTLMSENGEV
CCCCHHHHHHHHHHHCCCCCHHHHHCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHH
AKQVTGTLSQEGCFDTLELHDLENNTGLALVLDANYYRDAQTLEKKVQLQGKCQLAALPS
HHHHHHCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCC
AGVTWETDDNGFVVSATGKEMKVEYRYDSEGYPLGKTTINSQNTLSVTAKPSADPRKKLD
CCCEEEECCCCEEEEECCCEEEEEEEECCCCCCCCCEEECCCCEEEEEECCCCCHHHHCC
YTAVSRVDDRQVGNVTQSCEYDAYANPVDCRLVIVDESVKPAVSHHYTIKNRIDYY
HHHHHCCCCHHHCCHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHEEEECCCCCCC
>Mature Secondary Structure
MKKPLLLTLLCMILAGCDNPKSLESFTPEMASFSNEFDFDPLRGPVKDFSQTLMSENGEV
CCCCHHHHHHHHHHHCCCCCHHHHHCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHH
AKQVTGTLSQEGCFDTLELHDLENNTGLALVLDANYYRDAQTLEKKVQLQGKCQLAALPS
HHHHHHCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCC
AGVTWETDDNGFVVSATGKEMKVEYRYDSEGYPLGKTTINSQNTLSVTAKPSADPRKKLD
CCCEEEECCCCEEEEECCCEEEEEEEECCCCCCCCCEEECCCCEEEEEECCCCCHHHHCC
YTAVSRVDDRQVGNVTQSCEYDAYANPVDCRLVIVDESVKPAVSHHYTIKNRIDYY
HHHHHCCCCHHHCCHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA