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The map label for this gene is sodC

Identifier: 16764788

GI number: 16764788

Start: 1516050

End: 1516571

Strand: Direct

Name: sodC

Synonym: STM1440

Alternate gene names: 16764788

Gene position: 1516050-1516571 (Clockwise)

Preceding gene: 16764787

Following gene: 161353603

Centisome position: 31.21

GC content: 56.32

Gene sequence:

>522_bases
ATGAAGCGATTAAGTTTAGCGATGGTGACGCTGCTGGCCTGTGCGGGTGCGCAGGCCGCCAGCGAGAAAGTAGAGATGAA
TCTGGTGACGGCGCAAGGCGTAGGACAGTCTATCGGCACCGTCGTCATCGATGAAACCGAAGGCGGCTTAAAATTTACCC
CACACCTTAAAGCGTTGCCGCCGGGCGAGCATGGTTTTCACATTCATGCCAACGGTAGCTGCCAGCCCGCGATTAAAGAC
GGCAAAGCGGTTGCCGCAGAAGCCGCTGGTGGTCATCTGGACCCACAAAATACCGGCAAGCATGAAGGACCGGAAGGCCA
GGGGCATCTGGGCGACCTCCCGGTGTTAGTCGTTAATAATGATGGTATCGCCAGCGAACCGGTTACTGCGCCGCGTCTGA
AGTCTCTTGATGAAGTGAAAGATAAAGCGCTCATGATCCATGTGGGCGGCGATAACATGTCCGATCAGCCGAAACCGCTC
GGCGGCGGCGGAATGCGTTACGCCTGCGGCGTCATTAAATAA

Upstream 100 bases:

>100_bases
CTGGGTTATGACGTGCCGTAATCGCCAACTCGTTGACTTTCCGTACATGTTTTCGCCAGTGGTTTACACTTAACAGGCGA
CCACATGTAACGGAGGTTTT

Downstream 100 bases:

>100_bases
CCCGGAGCCAGTGTTCCCTGCGCTGGAGCCTGTTCCAGCTGCGACAGCGAACAGTGTAAACGCCAGATAATCGCCGCCAG
CTCATGCGCGGCGGGTTGAT

Product: superoxide dismutase

Products: NA

Alternate protein names: sodCII

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MKRLSLAMVTLLACAGAQAASEKVEMNLVTAQGVGQSIGTVVIDETEGGLKFTPHLKALPPGEHGFHIHANGSCQPAIKD
GKAVAAEAAGGHLDPQNTGKHEGPEGQGHLGDLPVLVVNNDGIASEPVTAPRLKSLDEVKDKALMIHVGGDNMSDQPKPL
GGGGMRYACGVIK

Sequences:

>Translated_173_residues
MKRLSLAMVTLLACAGAQAASEKVEMNLVTAQGVGQSIGTVVIDETEGGLKFTPHLKALPPGEHGFHIHANGSCQPAIKD
GKAVAAEAAGGHLDPQNTGKHEGPEGQGHLGDLPVLVVNNDGIASEPVTAPRLKSLDEVKDKALMIHVGGDNMSDQPKPL
GGGGMRYACGVIK
>Mature_173_residues
MKRLSLAMVTLLACAGAQAASEKVEMNLVTAQGVGQSIGTVVIDETEGGLKFTPHLKALPPGEHGFHIHANGSCQPAIKD
GKAVAAEAAGGHLDPQNTGKHEGPEGQGHLGDLPVLVVNNDGIASEPVTAPRLKSLDEVKDKALMIHVGGDNMSDQPKPL
GGGGMRYACGVIK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Periplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family

Homologues:

Organism=Escherichia coli, GI1787934, Length=173, Percent_Identity=82.0809248554913, Blast_Score=293, Evalue=3e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SODC_SALTY (O68901)

Other databases:

- EMBL:   AF056931
- EMBL:   AE006468
- RefSeq:   NP_460403.1
- ProteinModelPortal:   O68901
- SMR:   O68901
- PRIDE:   O68901
- GeneID:   1252958
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM1440
- HOGENOM:   HBG609879
- OMA:   IHANGDT
- ProtClustDB:   PRK10290
- BioCyc:   STYP99287:STM1440-MONOMER
- BRENDA:   1.15.1.1
- InterPro:   IPR018152
- InterPro:   IPR001424
- Gene3D:   G3DSA:2.60.40.200
- PANTHER:   PTHR10003

Pfam domain/function: PF00080 Sod_Cu; SSF49329 SOD_Cu_Zn

EC number: =1.15.1.1

Molecular weight: Translated: 17738; Mature: 17738

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00087 SOD_CU_ZN_1; PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLSLAMVTLLACAGAQAASEKVEMNLVTAQGVGQSIGTVVIDETEGGLKFTPHLKALP
CCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCEEECCCCCCCC
PGEHGFHIHANGSCQPAIKDGKAVAAEAAGGHLDPQNTGKHEGPEGQGHLGDLPVLVVNN
CCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
DGIASEPVTAPRLKSLDEVKDKALMIHVGGDNMSDQPKPLGGGGMRYACGVIK
CCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECC
>Mature Secondary Structure
MKRLSLAMVTLLACAGAQAASEKVEMNLVTAQGVGQSIGTVVIDETEGGLKFTPHLKALP
CCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCEEEEECCCCCEEECCCCCCCC
PGEHGFHIHANGSCQPAIKDGKAVAAEAAGGHLDPQNTGKHEGPEGQGHLGDLPVLVVNN
CCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
DGIASEPVTAPRLKSLDEVKDKALMIHVGGDNMSDQPKPLGGGGMRYACGVIK
CCCCCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10377444; 11677609