Click here to switch to the map view.

The map label for this gene is ydiT [H]

Identifier: 16764702

GI number: 16764702

Start: 1431919

End: 1432212

Strand: Reverse

Name: ydiT [H]

Synonym: STM1351

Alternate gene names: 16764702

Gene position: 1432212-1431919 (Counterclockwise)

Preceding gene: 16764703

Following gene: 16764701

Centisome position: 29.48

GC content: 48.3

Gene sequence:

>294_bases
ATGAGTTCGGACAATAAGGTGAATGTTGACGTCAAATTGGGCGTAAATAAATTTTACGTAGATGAAGGACACCCACATAT
CATTTTGCGCTCCTCGCCTGACATGCAGGAGTTTAATAAATTAATAAAAGCCTGCCCTGCCGGACTCTATAAGCTGGACG
ATGCGGGAAATATTCATTTTGACTCCGCGGGCTGCCTGGAATGCGGGACCTGCAGGGTTCTCTGCGGCAATACTCTTCTC
GAAAAATGGGAATACCCGGCGGGAACGTTCGGCGTTGAGTTTCGCTACGGCTGA

Upstream 100 bases:

>100_bases
GCGGTCCAGTCCCACCGTTGCGTAAAACTATCCTGTCACATGCGAAAAAAATTGGACTGGTGAATCTATTAAAAGACGGC
ATAAAAGGGGCTACGGCATT

Downstream 100 bases:

>100_bases
CGCTCTGAAACACCGGATAACGACGCTACGGCGTCTTATTCGGCTTGCCCCCGGAGATTACGTCATTTGTATTAATAGAG
AACAAGTCAATGAGTGTTAC

Product: ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 97; Mature: 96

Protein sequence:

>97_residues
MSSDNKVNVDVKLGVNKFYVDEGHPHIILRSSPDMQEFNKLIKACPAGLYKLDDAGNIHFDSAGCLECGTCRVLCGNTLL
EKWEYPAGTFGVEFRYG

Sequences:

>Translated_97_residues
MSSDNKVNVDVKLGVNKFYVDEGHPHIILRSSPDMQEFNKLIKACPAGLYKLDDAGNIHFDSAGCLECGTCRVLCGNTLL
EKWEYPAGTFGVEFRYG
>Mature_96_residues
SSDNKVNVDVKLGVNKFYVDEGHPHIILRSSPDMQEFNKLIKACPAGLYKLDDAGNIHFDSAGCLECGTCRVLCGNTLLE
KWEYPAGTFGVEFRYG

Specific function: Could be a 3Fe-4S cluster-containing protein. Probably participates in a redox process with ydiQ, ydiR and ydiS [H]

COG id: COG2440

COG function: function code C; Ferredoxin-like protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial-type ferredoxin family. FixX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787992, Length=97, Percent_Identity=80.4123711340206, Blast_Score=175, Evalue=4e-46,
Organism=Escherichia coli, GI1786228, Length=91, Percent_Identity=68.1318681318681, Blast_Score=135, Evalue=4e-34,
Organism=Escherichia coli, GI87082156, Length=73, Percent_Identity=47.945205479452, Blast_Score=86, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017900
- InterPro:   IPR012206 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10759; Mature: 10628

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
5.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSDNKVNVDVKLGVNKFYVDEGHPHIILRSSPDMQEFNKLIKACPAGLYKLDDAGNIHF
CCCCCEEEEEEEECCEEEEEECCCCEEEEECCCCHHHHHHHHHHCCCCCEEECCCCCEEE
DSAGCLECGTCRVLCGNTLLEKWEYPAGTFGVEFRYG
CCCCCCCCCCEEEEECCHHHHHCCCCCCCEEEEEECC
>Mature Secondary Structure 
SSDNKVNVDVKLGVNKFYVDEGHPHIILRSSPDMQEFNKLIKACPAGLYKLDDAGNIHF
CCCCEEEEEEEECCEEEEEECCCCEEEEECCCCHHHHHHHHHHCCCCCEEECCCCCEEE
DSAGCLECGTCRVLCGNTLLEKWEYPAGTFGVEFRYG
CCCCCCCCCCEEEEECCHHHHHCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]