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The map label for this gene is ybcM [H]

Identifier: 16764441

GI number: 16764441

Start: 1172746

End: 1173525

Strand: Direct

Name: ybcM [H]

Synonym: STM1082

Alternate gene names: 16764441

Gene position: 1172746-1173525 (Clockwise)

Preceding gene: 16764440

Following gene: 16764442

Centisome position: 24.14

GC content: 53.85

Gene sequence:

>780_bases
ATGCATATTCGACATCAGGATCTTACGACGGCAGAGGTGCGTTCCAGTCATCTGCACCGTTTGCATCGTGTTACGCTTTT
TTCCGCCGCTATCTGCCATATTACGCAGGGCAGTAAAGTCATCATTCAGGATGATAGCCGCCTTGTCGCCGGGCCTGGCG
AGTTGATTATTATCCCGGCGAACACGCCGCTGGAGATTATTAATCAGCCTGCGCAGAACGGTTTTCGCTCCGACCTGTTA
TTACTTTCACCGGAGATTATTGCTCGCTTTAAAACGATGTACGTTCAGGATTATCCACCGGCAAACCTGACATCGCTGTG
TACCCCGATGAGCCGTAGCCTGACATTTATGTGGGAGAACGTGTTGGATGCTGTGCGCCAGGGGTTGCCCGTTGGGCTAC
AGGAACATCAGGCGATGGGGTTACTGTTAGCGCTTTTACATGATGGCGCGGCGGGACCACTGCTTATTGAACGGCGTTAC
ACCCTCACGGAGCAGGTGCGGCAACTGATTATGCTCTCGCCTGCTAAGCTATGGACAGCCCAGGAGATAGCCCGCCGTCT
TGCTATGGGAACATCGACGTTGCGTCGGCGTTTGCAGCGTGAATCGCAGAGTTATCGACAAATTGTTGAAGAGGTGCGCA
TGTCCTGCGCACTTTCTCAACTGCAATCGACGACGCTGCCAATCGGCGAAATAGCGCTACGGTGCGGCTACCTGTCGGGG
TCGCGATTTACGGCCAGATTCCGCCAGCATTATGGGTGTCTGCCCAGTCAGGTACGTTAA

Upstream 100 bases:

>100_bases
GGCGCGTTGGTAGGGTTTATGCTGAACGCGCATGTGATTGCGAAAGCAAAATTCACGGCCACATACGGAAGATAAAACAG
AGGACGGCACGGTGCAGGAG

Downstream 100 bases:

>100_bases
GTATGTCCTGTATGAGCCTCCACCGTTGATTATGAAAGGAGAACCATCATGTCGAACGTCTGCATTATCGCCTGGGTTTA
TGGTCGCGTTCAGGGAGTCG

Product: regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MHIRHQDLTTAEVRSSHLHRLHRVTLFSAAICHITQGSKVIIQDDSRLVAGPGELIIIPANTPLEIINQPAQNGFRSDLL
LLSPEIIARFKTMYVQDYPPANLTSLCTPMSRSLTFMWENVLDAVRQGLPVGLQEHQAMGLLLALLHDGAAGPLLIERRY
TLTEQVRQLIMLSPAKLWTAQEIARRLAMGTSTLRRRLQRESQSYRQIVEEVRMSCALSQLQSTTLPIGEIALRCGYLSG
SRFTARFRQHYGCLPSQVR

Sequences:

>Translated_259_residues
MHIRHQDLTTAEVRSSHLHRLHRVTLFSAAICHITQGSKVIIQDDSRLVAGPGELIIIPANTPLEIINQPAQNGFRSDLL
LLSPEIIARFKTMYVQDYPPANLTSLCTPMSRSLTFMWENVLDAVRQGLPVGLQEHQAMGLLLALLHDGAAGPLLIERRY
TLTEQVRQLIMLSPAKLWTAQEIARRLAMGTSTLRRRLQRESQSYRQIVEEVRMSCALSQLQSTTLPIGEIALRCGYLSG
SRFTARFRQHYGCLPSQVR
>Mature_259_residues
MHIRHQDLTTAEVRSSHLHRLHRVTLFSAAICHITQGSKVIIQDDSRLVAGPGELIIIPANTPLEIINQPAQNGFRSDLL
LLSPEIIARFKTMYVQDYPPANLTSLCTPMSRSLTFMWENVLDAVRQGLPVGLQEHQAMGLLLALLHDGAAGPLLIERRY
TLTEQVRQLIMLSPAKLWTAQEIARRLAMGTSTLRRRLQRESQSYRQIVEEVRMSCALSQLQSTTLPIGEIALRCGYLSG
SRFTARFRQHYGCLPSQVR

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786758, Length=253, Percent_Identity=33.9920948616601, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1789932, Length=112, Percent_Identity=35.7142857142857, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789933, Length=120, Percent_Identity=34.1666666666667, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29187; Mature: 29187

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIRHQDLTTAEVRSSHLHRLHRVTLFSAAICHITQGSKVIIQDDSRLVAGPGELIIIPA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEECCCCEEEEEC
NTPLEIINQPAQNGFRSDLLLLSPEIIARFKTMYVQDYPPANLTSLCTPMSRSLTFMWEN
CCCHHHHCCHHHCCHHCCHHHCCHHHHHHHHHHHHCCCCCCCHHHHHCHHHHHHHHHHHH
VLDAVRQGLPVGLQEHQAMGLLLALLHDGAAGPLLIERRYTLTEQVRQLIMLSPAKLWTA
HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHCCCHHHHHH
QEIARRLAMGTSTLRRRLQRESQSYRQIVEEVRMSCALSQLQSTTLPIGEIALRCGYLSG
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCC
SRFTARFRQHYGCLPSQVR
CHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MHIRHQDLTTAEVRSSHLHRLHRVTLFSAAICHITQGSKVIIQDDSRLVAGPGELIIIPA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEECCCCEEEEEC
NTPLEIINQPAQNGFRSDLLLLSPEIIARFKTMYVQDYPPANLTSLCTPMSRSLTFMWEN
CCCHHHHCCHHHCCHHCCHHHCCHHHHHHHHHHHHCCCCCCCHHHHHCHHHHHHHHHHHH
VLDAVRQGLPVGLQEHQAMGLLLALLHDGAAGPLLIERRYTLTEQVRQLIMLSPAKLWTA
HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHCCCHHHHHH
QEIARRLAMGTSTLRRRLQRESQSYRQIVEEVRMSCALSQLQSTTLPIGEIALRCGYLSG
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCC
SRFTARFRQHYGCLPSQVR
CHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]