Click here to switch to the map view.

The map label for this gene is ybcL [H]

Identifier: 16764440

GI number: 16764440

Start: 1172172

End: 1172720

Strand: Direct

Name: ybcL [H]

Synonym: STM1081

Alternate gene names: 16764440

Gene position: 1172172-1172720 (Clockwise)

Preceding gene: 16764437

Following gene: 16764441

Centisome position: 24.13

GC content: 54.64

Gene sequence:

>549_bases
ATGAAAACAGTCTTCTCTTTGACCGCAGCCGCAATGATGGCATTGAGTGGCGGCGTATCTGCCGCGTCGGCGTTTAGCCT
CAGTAGCGCGGATATTCCGGCGGATTTTCGTTTAACGCAACAGCACGTCTTTAAAGGATTTGGTTGTAGCGGAGAAAATA
TTTCGCCGCAGCTGAGCTGGCGCAATCCGCCTGCCGGAACCAAAAGCTACGCTATTACCGTCTTCGATCCTGATGCGCCC
ACCGGAAGCGGCTGGTGGCACTGGACGATGGTGAATATTCCTGCGCAGATTCACGACCTGCCGACGGGGGCTGATAAAAA
AACGTTACCCGCCGGAGTGGTGCAGGGACGTAATGATTTCGGTTATGCTGGCTTTGGCGGCGCCTGTCCGCCGCCGAGCG
ATAAGCCTCATCGCTATCAGTTTACTGTGTGGGCGCTGAATACGGCAACACTGCCGCTCGACAGTGAGTCAAGTGGCGCG
TTGGTAGGGTTTATGCTGAACGCGCATGTGATTGCGAAAGCAAAATTCACGGCCACATACGGAAGATAA

Upstream 100 bases:

>100_bases
TGGCGGTGAGCGTTTCTGCACAAAATAGAATCGTAAAGGCACAGTTTCTTCAGCGGACGCTTTTTATAGTGTTATTTCTT
TACACGAAGAAGGAAATACA

Downstream 100 bases:

>100_bases
AACAGAGGACGGCACGGTGCAGGAGATGCATATTCGACATCAGGATCTTACGACGGCAGAGGTGCGTTCCAGTCATCTGC
ACCGTTTGCATCGTGTTACG

Product: outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MKTVFSLTAAAMMALSGGVSAASAFSLSSADIPADFRLTQQHVFKGFGCSGENISPQLSWRNPPAGTKSYAITVFDPDAP
TGSGWWHWTMVNIPAQIHDLPTGADKKTLPAGVVQGRNDFGYAGFGGACPPPSDKPHRYQFTVWALNTATLPLDSESSGA
LVGFMLNAHVIAKAKFTATYGR

Sequences:

>Translated_182_residues
MKTVFSLTAAAMMALSGGVSAASAFSLSSADIPADFRLTQQHVFKGFGCSGENISPQLSWRNPPAGTKSYAITVFDPDAP
TGSGWWHWTMVNIPAQIHDLPTGADKKTLPAGVVQGRNDFGYAGFGGACPPPSDKPHRYQFTVWALNTATLPLDSESSGA
LVGFMLNAHVIAKAKFTATYGR
>Mature_182_residues
MKTVFSLTAAAMMALSGGVSAASAFSLSSADIPADFRLTQQHVFKGFGCSGENISPQLSWRNPPAGTKSYAITVFDPDAP
TGSGWWHWTMVNIPAQIHDLPTGADKKTLPAGVVQGRNDFGYAGFGGACPPPSDKPHRYQFTVWALNTATLPLDSESSGA
LVGFMLNAHVIAKAKFTATYGR

Specific function: Unknown

COG id: COG1881

COG function: function code R; Phospholipid-binding protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0098 family [H]

Homologues:

Organism=Escherichia coli, GI1786757, Length=183, Percent_Identity=59.0163934426229, Blast_Score=222, Evalue=1e-59,
Organism=Escherichia coli, GI1786990, Length=158, Percent_Identity=48.1012658227848, Blast_Score=154, Evalue=4e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008914
- InterPro:   IPR005247 [H]

Pfam domain/function: PF01161 PBP [H]

EC number: NA

Molecular weight: Translated: 19252; Mature: 19252

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTVFSLTAAAMMALSGGVSAASAFSLSSADIPADFRLTQQHVFKGFGCSGENISPQLSW
CCHHHHHHHHHHHHHCCCCCCHHEEECCCCCCCCCEEECHHHHHHCCCCCCCCCCCEEEE
RNPPAGTKSYAITVFDPDAPTGSGWWHWTMVNIPAQIHDLPTGADKKTLPAGVVQGRNDF
CCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCEEECCCCCCCCCCCCHHHCCCCCCC
GYAGFGGACPPPSDKPHRYQFTVWALNTATLPLDSESSGALVGFMLNAHVIAKAKFTATY
CCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCEEEEEEECCEEEEEEEEEEEC
GR
CC
>Mature Secondary Structure
MKTVFSLTAAAMMALSGGVSAASAFSLSSADIPADFRLTQQHVFKGFGCSGENISPQLSW
CCHHHHHHHHHHHHHCCCCCCHHEEECCCCCCCCCEEECHHHHHHCCCCCCCCCCCEEEE
RNPPAGTKSYAITVFDPDAPTGSGWWHWTMVNIPAQIHDLPTGADKKTLPAGVVQGRNDF
CCCCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCEEECCCCCCCCCCCCHHHCCCCCCC
GYAGFGGACPPPSDKPHRYQFTVWALNTATLPLDSESSGALVGFMLNAHVIAKAKFTATY
CCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCEEEEEEECCEEEEEEEEEEEC
GR
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 11439028 [H]