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The map label for this gene is cydB [H]

Identifier: 16764111

GI number: 16764111

Start: 811113

End: 812252

Strand: Direct

Name: cydB [H]

Synonym: STM0741

Alternate gene names: 16764111

Gene position: 811113-812252 (Clockwise)

Preceding gene: 16764110

Following gene: 16764112

Centisome position: 16.7

GC content: 54.91

Gene sequence:

>1140_bases
ATGATCGATTATGAAGTACTACGTTTTATCTGGTGGCTGCTGGTTGGCATTTTGCTAATTGGTTTCGCTGTCACCGATGG
GTTCGACATGGGGGTGGGGATGCTCACCCGTTTCCTCGGTCGTAACGACACCGAACGTCGAATTATGATTAACTCTATCG
CTCCACACTGGGACGGTAACCAGGTGTGGTTGATCACCGCGGGCGGTGCGTTGTTTGCTGCCTGGCCGATGGTTTACGCC
GCGGCGTTCTCCGGTTTCTATGTGGCGATGATCCTGGTGCTGGCGTCTTTGTTCTTCCGTCCGGTCGGTTTTGATTACCG
TTCCAAGATTGAAGACCCGCGCTGGCGCAACATGTGGGACTGGGGCGTGTTCATCGGTAGCTTTGTGCCGCCGCTGGTGA
TTGGCGTGGCCTTTGGCAACCTGTTGCAGGGCGTACCGTTCCACGTGGATGAGTATCTGCGTCTGTACTACACCGGTAAC
TTCTTCCAGTTGCTGAACCCGTTTGGTCTGCTGGCGGGTATCGTAAGCGTAGGGATGATCATCACGCAGGGGGCGACTTA
CCTGCAAATGCGCACCGTTGGCGAACTGCACCTGCGCGCGCGCGCCACCTCGCAGATTGCGGCGCTGGTGACATTAGTGT
GCTTTGCGCTGGCGGGCGTTTGGGTAATGTATGGTATTGATGGTTATGTCGTGACATCCGCGATTGATCATCATGCCGCC
TCTAACCCGCTGACTAAAGAAGTGGCGCGTGAAGCTGGCGCCTGGCTGGTGAACTTTAATAATGCTCCGATCCTGTGGTT
GGTTCCGGCTCTGGGCGTGGTTCTGCCGCTGCTGACTATCCTGACTTCCCGTATGGAGAAAGGCGCGTGGGCATTCCTGT
TCTCTTCGCTGACCCTGGCCTGCATTATTCTGACGGCGGGTATCGCTATGTTCCCATTTGTGATGCCGTCCAGCACGATG
ATGAATGCCAGCCTGACCATGTGGGATGCGACATCCAGCCAGATGACGCTGAACCTGATGACCTGGGTTGCGGCGGTGTT
CGTACCGATCATTCTGATCTACACCAGCTGGTGTTACTGGAAAATGTTCGGTCGTATCACTAAAGAACATATTGAAAGCA
ACACCCACTCTCTGTACTAA

Upstream 100 bases:

>100_bases
ATTTGCACGCCTTGGCCCAAGCAGCCTGAAAACCGGTCGCTATCACTTTGAGCAGTCCACCGTGACTTCTCAGCCGGCAC
GCTAAGACAGGAGTCGTCAA

Downstream 100 bases:

>100_bases
GTAAGGAGCTTAAAATGTGGTATTTCGCATGGATTCTGGGAACGCTTCTTGCCTGTGCATTCGGGATCATTACCGCCCTG
GCGCTTGAGCACGTTGAAGC

Product: cytochrome d terminal oxidase polypeptide subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MIDYEVLRFIWWLLVGILLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYA
AAFSGFYVAMILVLASLFFRPVGFDYRSKIEDPRWRNMWDWGVFIGSFVPPLVIGVAFGNLLQGVPFHVDEYLRLYYTGN
FFQLLNPFGLLAGIVSVGMIITQGATYLQMRTVGELHLRARATSQIAALVTLVCFALAGVWVMYGIDGYVVTSAIDHHAA
SNPLTKEVAREAGAWLVNFNNAPILWLVPALGVVLPLLTILTSRMEKGAWAFLFSSLTLACIILTAGIAMFPFVMPSSTM
MNASLTMWDATSSQMTLNLMTWVAAVFVPIILIYTSWCYWKMFGRITKEHIESNTHSLY

Sequences:

>Translated_379_residues
MIDYEVLRFIWWLLVGILLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYA
AAFSGFYVAMILVLASLFFRPVGFDYRSKIEDPRWRNMWDWGVFIGSFVPPLVIGVAFGNLLQGVPFHVDEYLRLYYTGN
FFQLLNPFGLLAGIVSVGMIITQGATYLQMRTVGELHLRARATSQIAALVTLVCFALAGVWVMYGIDGYVVTSAIDHHAA
SNPLTKEVAREAGAWLVNFNNAPILWLVPALGVVLPLLTILTSRMEKGAWAFLFSSLTLACIILTAGIAMFPFVMPSSTM
MNASLTMWDATSSQMTLNLMTWVAAVFVPIILIYTSWCYWKMFGRITKEHIESNTHSLY
>Mature_379_residues
MIDYEVLRFIWWLLVGILLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYA
AAFSGFYVAMILVLASLFFRPVGFDYRSKIEDPRWRNMWDWGVFIGSFVPPLVIGVAFGNLLQGVPFHVDEYLRLYYTGN
FFQLLNPFGLLAGIVSVGMIITQGATYLQMRTVGELHLRARATSQIAALVTLVCFALAGVWVMYGIDGYVVTSAIDHHAA
SNPLTKEVAREAGAWLVNFNNAPILWLVPALGVVLPLLTILTSRMEKGAWAFLFSSLTLACIILTAGIAMFPFVMPSSTM
MNASLTMWDATSSQMTLNLMTWVAAVFVPIILIYTSWCYWKMFGRITKEHIESNTHSLY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=379, Percent_Identity=92.0844327176781, Blast_Score=722, Evalue=0.0,
Organism=Escherichia coli, GI1787213, Length=379, Percent_Identity=57.7836411609499, Blast_Score=451, Evalue=1e-128,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 42366; Mature: 42366

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDYEVLRFIWWLLVGILLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC
QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEDPRWRNMWD
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCHH
WGVFIGSFVPPLVIGVAFGNLLQGVPFHVDEYLRLYYTGNFFQLLNPFGLLAGIVSVGMI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
ITQGATYLQMRTVGELHLRARATSQIAALVTLVCFALAGVWVMYGIDGYVVTSAIDHHAA
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
SNPLTKEVAREAGAWLVNFNNAPILWLVPALGVVLPLLTILTSRMEKGAWAFLFSSLTLA
CCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQMTLNLMTWVAAVFVPIILIYTSWCYW
HHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KMFGRITKEHIESNTHSLY
HHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MIDYEVLRFIWWLLVGILLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC
QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEDPRWRNMWD
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCHH
WGVFIGSFVPPLVIGVAFGNLLQGVPFHVDEYLRLYYTGNFFQLLNPFGLLAGIVSVGMI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
ITQGATYLQMRTVGELHLRARATSQIAALVTLVCFALAGVWVMYGIDGYVVTSAIDHHAA
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
SNPLTKEVAREAGAWLVNFNNAPILWLVPALGVVLPLLTILTSRMEKGAWAFLFSSLTLA
CCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQMTLNLMTWVAAVFVPIILIYTSWCYW
HHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KMFGRITKEHIESNTHSLY
HHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]