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The map label for this gene is cydA [H]

Identifier: 16764110

GI number: 16764110

Start: 809529

End: 811097

Strand: Direct

Name: cydA [H]

Synonym: STM0740

Alternate gene names: 16764110

Gene position: 809529-811097 (Clockwise)

Preceding gene: 16764109

Following gene: 16764111

Centisome position: 16.67

GC content: 53.73

Gene sequence:

>1569_bases
ATGTTAGATATAGTCGAACTGTCGCGCTTACAGTTTGCCTTGACCGCGATGTACCACTTCCTGTTTGTGCCGCTAACGCT
CGGTATGGCGTTCCTGCTGGCCATTATGGAAACGGTATACGTCCTTTCCGGCAAACAGATTTATAAAGATATGACCAAGT
TCTGGGGCAAGTTGTTTGGTATCAACTTTGCTCTGGGTGTGGCTACCGGTTTGACCATGGAGTTCCAGTTCGGGACAAAC
TGGTCGTACTACTCCCACTATGTTGGGGACATCTTCGGTGCGCCGCTGGCCATCGAAGGTTTGATGGCCTTCTTCCTCGA
ATCCACCTTTGTAGGTCTGTTCTTCTTCGGCTGGGATCGTCTGAGTAAAGTTCAGCATATGTGCGTCACCTGGCTGGTGG
CTCTGGGGTCCAACCTCTCCGCGTTGTGGATTCTGGTAGCGAACGGCTGGATGCAAAACCCAATCGCTGCGGATTTCAAT
TTCGAAACCATGCGTATGGAAATGGTGAGCTTCTCTGAACTGGTGCTGAACCCGGTAGCACAGGTGAAATTTGTTCACAC
TGTGGCGTCCGGCTATGTCACCGGCGCGATGTTCATCCTCGGTATCAGCGCTTACTACATGCTGAAAGGTCGTGACTTCG
CCTTTGCTAAACGCTCCTTTGCTATTGCCGCCAGCTTCGGTATGGCTGCCGTACTGTCCGTTATCGTACTCGGCGACGAA
TCCGGTTACGAAATGGGCGACGTGCAGAAAACCAAGCTCGCTGCGATTGAAGCTGAATGGGAAACGCAACCTGCTCCGGC
CTCCTTTACCTTGTTCGGTATTCCTGACCAGGACAAACAGGAAAACCATCTGGCGATTCAGATCCCTTATGCGCTCGGTA
TTATCGCTACGCGTTCCGTGGACACGCCGGTTATTGGCCTGAAAGATCTCATGGTTCAGCATGAAGAGCGTATCCGTAAC
GGGATGAAAGCCTATGAACTGCTGGAGCAGCTGCGCGCCGGTTCTACCGACCAGGCCGTTCGCGACCAGTTCAACAGCAT
GAAGAAAGATCTCGGTTACGGCCTGCTGCTGAAACGCTATACGCCTAATGTGACTGACGCGACCGAAGCGCAGATCCAGC
AAGCGACGAAAGATTCCATTCCTCGCGTTGCGCCGCTGTACTTCGCTTTCCGTATCATGGTGGCGTGCGGCTTCCTGCTG
CTGGCGATCATCGCACTTTCCTTCTGGAGCGTGATTCGTAACCGCATCGGTGAGAAAAAATGGCTGTTGCGCGCGGCGCT
ATACGGTATTCCACTGCCGTGGATTGCGGTTGAAGCAGGTTGGTTCGTCGCCGAGTATGGTCGTCAGCCGTGGGCGATCG
GCGAAGTGTTGCCGACAGCCGTAGCGAACTCATCGCTGACCGTGGGCGATCTGCTGTTCTCCATGTTCCTGATTTGCGGC
CTGTATACCCTGTTCCTGGTGGCAGAATTGTTCCTGATGTTCAAATTTGCACGCCTTGGCCCAAGCAGCCTGAAAACCGG
TCGCTATCACTTTGAGCAGTCCACCGTGACTTCTCAGCCGGCACGCTAA

Upstream 100 bases:

>100_bases
ACGATGGAAGGCCGCAAATAAATTTGTATTGGGGCATGCGTGTGACCCTTTCTAACGGGGTTCACTCTCGGAGTCTTCAT
GCGATGAGCAAGGAGTCATG

Downstream 100 bases:

>100_bases
GACAGGAGTCGTCAAATGATCGATTATGAAGTACTACGTTTTATCTGGTGGCTGCTGGTTGGCATTTTGCTAATTGGTTT
CGCTGTCACCGATGGGTTCG

Product: cytochrome d terminal oxidase polypeptide subunit I

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit I; Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 522; Mature: 522

Protein sequence:

>522_residues
MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTN
WSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLSKVQHMCVTWLVALGSNLSALWILVANGWMQNPIAADFN
FETMRMEMVSFSELVLNPVAQVKFVHTVASGYVTGAMFILGISAYYMLKGRDFAFAKRSFAIAASFGMAAVLSVIVLGDE
SGYEMGDVQKTKLAAIEAEWETQPAPASFTLFGIPDQDKQENHLAIQIPYALGIIATRSVDTPVIGLKDLMVQHEERIRN
GMKAYELLEQLRAGSTDQAVRDQFNSMKKDLGYGLLLKRYTPNVTDATEAQIQQATKDSIPRVAPLYFAFRIMVACGFLL
LAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSLTVGDLLFSMFLICG
LYTLFLVAELFLMFKFARLGPSSLKTGRYHFEQSTVTSQPAR

Sequences:

>Translated_522_residues
MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTN
WSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLSKVQHMCVTWLVALGSNLSALWILVANGWMQNPIAADFN
FETMRMEMVSFSELVLNPVAQVKFVHTVASGYVTGAMFILGISAYYMLKGRDFAFAKRSFAIAASFGMAAVLSVIVLGDE
SGYEMGDVQKTKLAAIEAEWETQPAPASFTLFGIPDQDKQENHLAIQIPYALGIIATRSVDTPVIGLKDLMVQHEERIRN
GMKAYELLEQLRAGSTDQAVRDQFNSMKKDLGYGLLLKRYTPNVTDATEAQIQQATKDSIPRVAPLYFAFRIMVACGFLL
LAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSLTVGDLLFSMFLICG
LYTLFLVAELFLMFKFARLGPSSLKTGRYHFEQSTVTSQPAR
>Mature_522_residues
MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTN
WSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLSKVQHMCVTWLVALGSNLSALWILVANGWMQNPIAADFN
FETMRMEMVSFSELVLNPVAQVKFVHTVASGYVTGAMFILGISAYYMLKGRDFAFAKRSFAIAASFGMAAVLSVIVLGDE
SGYEMGDVQKTKLAAIEAEWETQPAPASFTLFGIPDQDKQENHLAIQIPYALGIIATRSVDTPVIGLKDLMVQHEERIRN
GMKAYELLEQLRAGSTDQAVRDQFNSMKKDLGYGLLLKRYTPNVTDATEAQIQQATKDSIPRVAPLYFAFRIMVACGFLL
LAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSLTVGDLLFSMFLICG
LYTLFLVAELFLMFKFARLGPSSLKTGRYHFEQSTVTSQPAR

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=522, Percent_Identity=96.1685823754789, Blast_Score=1034, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=506, Percent_Identity=61.4624505928854, Blast_Score=660, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 58316; Mature: 58316

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
INFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDR
CHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LSKVQHMCVTWLVALGSNLSALWILVANGWMQNPIAADFNFETMRMEMVSFSELVLNPVA
HHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
QVKFVHTVASGYVTGAMFILGISAYYMLKGRDFAFAKRSFAIAASFGMAAVLSVIVLGDE
HHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHEECCC
SGYEMGDVQKTKLAAIEAEWETQPAPASFTLFGIPDQDKQENHLAIQIPYALGIIATRSV
CCCCCCCCCHHHHHEEEECCCCCCCCCCEEEEECCCCCCCCCCEEEEECHHHHHHEECCC
DTPVIGLKDLMVQHEERIRNGMKAYELLEQLRAGSTDQAVRDQFNSMKKDLGYGLLLKRY
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECC
TPNVTDATEAQIQQATKDSIPRVAPLYFAFRIMVACGFLLLAIIALSFWSVIRNRIGEKK
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
WLLRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSLTVGDLLFSMFLICG
HHHHHHHHCCCCCHHEEECCHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LYTLFLVAELFLMFKFARLGPSSLKTGRYHFEQSTVTSQPAR
HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCC
>Mature Secondary Structure
MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
INFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDR
CHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LSKVQHMCVTWLVALGSNLSALWILVANGWMQNPIAADFNFETMRMEMVSFSELVLNPVA
HHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
QVKFVHTVASGYVTGAMFILGISAYYMLKGRDFAFAKRSFAIAASFGMAAVLSVIVLGDE
HHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHEECCC
SGYEMGDVQKTKLAAIEAEWETQPAPASFTLFGIPDQDKQENHLAIQIPYALGIIATRSV
CCCCCCCCCHHHHHEEEECCCCCCCCCCEEEEECCCCCCCCCCEEEEECHHHHHHEECCC
DTPVIGLKDLMVQHEERIRNGMKAYELLEQLRAGSTDQAVRDQFNSMKKDLGYGLLLKRY
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECC
TPNVTDATEAQIQQATKDSIPRVAPLYFAFRIMVACGFLLLAIIALSFWSVIRNRIGEKK
CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
WLLRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSLTVGDLLFSMFLICG
HHHHHHHHCCCCCHHEEECCHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LYTLFLVAELFLMFKFARLGPSSLKTGRYHFEQSTVTSQPAR
HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]