| Definition | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chromosome, complete genome. |
|---|---|
| Accession | NC_003197 |
| Length | 4,857,432 |
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The map label for this gene is stiC [H]
Identifier: 16763565
GI number: 16763565
Start: 205079
End: 207625
Strand: Reverse
Name: stiC [H]
Synonym: STM0175
Alternate gene names: 16763565
Gene position: 207625-205079 (Counterclockwise)
Preceding gene: 16763566
Following gene: 16763564
Centisome position: 4.27
GC content: 55.36
Gene sequence:
>2547_bases ATGCGCAAAAGGCAACACCGGGTATTTTATTTATCGCGCTGCGCTGTGTGTATCGCGCTGGGCAGCACGTTCACACACGT TGCATGGGCGCGCGACTATTTCAATCCGGCATTTATTGAAAACCATGGGCAGGCGAATCGCACAAGCGTCGATCTGTCGA CATTTGATAACGACAAAAGCCAGCTGCCTGGCACCTATTACGTCACTATCAATATCAATAAAACAGAAATCGGCGCACGA AACGTTGATTTTCAACTCGCGACGCTCAGTGACGGTCAACAGGCATTACAGGGCTGTTTACGGCTCCAGGAACTAAAAGA TAACGGCGTCAAAACCGACCTTTTTCCAACGCTGGAGAGTGAAAAAGGCTGCGTCGATCTCAGCGTTATCCCCGGCGCCA GCCAGCGGTTTGATTTTCAGCAACAGGCATTATCAGTAAGCATCCCGCAACTCTACATCGCCAACAACGCACGCGGCTAC GTACCGCCGGAAAAGTGGCAGGAGGGGATTACCGCGCTGATGCTGAACTACAGCTTCAGCGGCTATAAAGAGTACGGTTC CAGTGAGGATTCCGACGATGCGGAATCGAAGTATCTCGCTCTCCAGCCGGGTTTTAACCTCGGGCCGTGGCGTTTTCGCA ACTACAGTAACTGGAGTTCAAATAACGGCGAGAACGGTAGCTGGAACAGCGTTTATAACTATTTACAGCGCGACATTATC GCGCTGAAAAGCCAGTTCACCGCCGGAGACAGCAATACGCCATCCGACGTGTTCGACAGCGTACCTTTTCGCGGCCTCCA GCTCACCTCTGACGATCAAATGCAGCCCAACAGCCAGCGTGGTTACGCCCCGACGATTCGCGGCATCGCCCGCTCAAACG CGCAGGTTATCGTGCGGCAAAACGGCTATATCGCCTATCAGACCGCCGTTTCGCCGGGCGAATTTGAAATCAACGATATG TTTCCCACCGGCAGCAACGGCGACTATGACGTGACGGTAAAAGAAGCCGACGGCAGCGAACAGCATTTTATCGTGCCCTA CTCTTCGCTGCCGATTCTGCAGCGCACCGGACGGGCAAAATACAGCGTGACCGTGGGTAAATATCGCGATTATAACAACC ACGCGCTGGACGACTTCGGCCAGGCGACCCTGCTGTACGGCCTGCCGTGGGGCATCACCCTGTACGGCGGCAGCCAGATT GCCGGCGATAAATACCAGTCCGTCGCCTTCGGCGTCGGGCAAAATATGCAGATGCTGGGGGCCATTTCCCTGGACGGCAT CTGGTCGCACGCCAAATTTGACGATGGCCGCAAAGAAATCGGGCAATCCTGGCACGTCCGCTACAGCAAGGGCGTCGTCA GTACGGGCACCACGTTTTCGCTGGCCGGCTATCGTTACGCCAGCGAAAACTACAATTCGCTGAGCGAGGTGATCAACCCG GACGACGATTTTTATGATAACTACGGCAAGCGCCATAATCGTTTCGAAGCTTCGGTCAACCAGCAAATTAGCAATACGCT CGGTTCCTTAACGCTAAGTTGGGTCAAAGAAGATTACTGGCACAGCGCGCAGCAGATGGAATCCCTGAGCGCCAGCTACA ACAATAGCTGGGGTCCGGTGAGCTATACGCTGAGCTACAGCTATAACAAAAACACCTACCAGTACCGTTCGGACAATGAC GATGATGACAACGACGACGATCGTTATAACCAGAACGATCGGCTGTTCACGCTGTCGCTGCACGTTCCGTTTACGGTGTT CGATTCCAGGCTATACGCCAGCTATATGCTGAACACGCGTAAGCACGATGCCACGGTGAACAGCACCACCCTTAGCGGCA CCGCGCTGCGTGACAGAAACCTGAACTGGTCGTTACAGCAAAGCCACAGCACACAAGACGGTGATTCCGGCGGGGTAAAC GCCAGCTATAAAGGCACTTATGCCAACCTCAACGCCGGTTACAATCAGTCGCCAGATAGCCAACAAGTCAGCTACGGCAT CAGCGGCGGCATTCTGGCGCACGAAAACGGTATTACCCTGAGCCAGCCGATTACCGGCGCGGCGATTTTAATTAAAGCGC CCGGCGCCAGCGGCGTTTCGGTTGAAAACCAGACCGGCGTCGCCACCGACTTCCGGGGTTATACGGTGATCCCCAACGTC ACGCCGTATTATCGCTACGATATCTCGCTCGACAGCAGCACGTTTGCTGACAACGTGGATATTCCGCTCAACAACCAGAC CGTCTACCCGACGCGTAATGCGGTGGTGCGCGCGGCGTATGACACGCATAAGGGCTATCGCGTGTTGTTAACGCTGACGC GCAGCAATGGCGAGCCCGTGCCCTTTGGCGCGACGGCAAGCGTCGATGGGCAGGATGCGAACCTGGCCAGTATCGTCGGC GATAAAGGCCAGGTCTTCCTCAGCGGCCTGCCGGAAGAGGGCCTGCTGCTGGTGAACTGGGGAAGCGCCTCTTGCCGCGC GGATTACCGCCTGGATATCAGCAAAAATATGAACGGCATAGTGATGGCGAACGCCGTCTGCCAGTGA
Upstream 100 bases:
>100_bases CCAGCGGCCCGATTGTCTGGTCTATCATCAACGATTTTGGCGGTACTGGCCCCGAACATAAACAAACGCCTTGAGAAGAG TGACAGGGATGAGAGTGCCG
Downstream 100 bases:
>100_bases GGAACACAATGAAGAATTTATGGATGCTGCTGGCGCTATCGCTATTTTCAGGCCATGCGCTGGCAGACGGAACGATGGGC AACGGAAGCGGCTGGTGTCA
Product: fimbrial usher
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 848; Mature: 848
Protein sequence:
>848_residues MRKRQHRVFYLSRCAVCIALGSTFTHVAWARDYFNPAFIENHGQANRTSVDLSTFDNDKSQLPGTYYVTININKTEIGAR NVDFQLATLSDGQQALQGCLRLQELKDNGVKTDLFPTLESEKGCVDLSVIPGASQRFDFQQQALSVSIPQLYIANNARGY VPPEKWQEGITALMLNYSFSGYKEYGSSEDSDDAESKYLALQPGFNLGPWRFRNYSNWSSNNGENGSWNSVYNYLQRDII ALKSQFTAGDSNTPSDVFDSVPFRGLQLTSDDQMQPNSQRGYAPTIRGIARSNAQVIVRQNGYIAYQTAVSPGEFEINDM FPTGSNGDYDVTVKEADGSEQHFIVPYSSLPILQRTGRAKYSVTVGKYRDYNNHALDDFGQATLLYGLPWGITLYGGSQI AGDKYQSVAFGVGQNMQMLGAISLDGIWSHAKFDDGRKEIGQSWHVRYSKGVVSTGTTFSLAGYRYASENYNSLSEVINP DDDFYDNYGKRHNRFEASVNQQISNTLGSLTLSWVKEDYWHSAQQMESLSASYNNSWGPVSYTLSYSYNKNTYQYRSDND DDDNDDDRYNQNDRLFTLSLHVPFTVFDSRLYASYMLNTRKHDATVNSTTLSGTALRDRNLNWSLQQSHSTQDGDSGGVN ASYKGTYANLNAGYNQSPDSQQVSYGISGGILAHENGITLSQPITGAAILIKAPGASGVSVENQTGVATDFRGYTVIPNV TPYYRYDISLDSSTFADNVDIPLNNQTVYPTRNAVVRAAYDTHKGYRVLLTLTRSNGEPVPFGATASVDGQDANLASIVG DKGQVFLSGLPEEGLLLVNWGSASCRADYRLDISKNMNGIVMANAVCQ
Sequences:
>Translated_848_residues MRKRQHRVFYLSRCAVCIALGSTFTHVAWARDYFNPAFIENHGQANRTSVDLSTFDNDKSQLPGTYYVTININKTEIGAR NVDFQLATLSDGQQALQGCLRLQELKDNGVKTDLFPTLESEKGCVDLSVIPGASQRFDFQQQALSVSIPQLYIANNARGY VPPEKWQEGITALMLNYSFSGYKEYGSSEDSDDAESKYLALQPGFNLGPWRFRNYSNWSSNNGENGSWNSVYNYLQRDII ALKSQFTAGDSNTPSDVFDSVPFRGLQLTSDDQMQPNSQRGYAPTIRGIARSNAQVIVRQNGYIAYQTAVSPGEFEINDM FPTGSNGDYDVTVKEADGSEQHFIVPYSSLPILQRTGRAKYSVTVGKYRDYNNHALDDFGQATLLYGLPWGITLYGGSQI AGDKYQSVAFGVGQNMQMLGAISLDGIWSHAKFDDGRKEIGQSWHVRYSKGVVSTGTTFSLAGYRYASENYNSLSEVINP DDDFYDNYGKRHNRFEASVNQQISNTLGSLTLSWVKEDYWHSAQQMESLSASYNNSWGPVSYTLSYSYNKNTYQYRSDND DDDNDDDRYNQNDRLFTLSLHVPFTVFDSRLYASYMLNTRKHDATVNSTTLSGTALRDRNLNWSLQQSHSTQDGDSGGVN ASYKGTYANLNAGYNQSPDSQQVSYGISGGILAHENGITLSQPITGAAILIKAPGASGVSVENQTGVATDFRGYTVIPNV TPYYRYDISLDSSTFADNVDIPLNNQTVYPTRNAVVRAAYDTHKGYRVLLTLTRSNGEPVPFGATASVDGQDANLASIVG DKGQVFLSGLPEEGLLLVNWGSASCRADYRLDISKNMNGIVMANAVCQ >Mature_848_residues MRKRQHRVFYLSRCAVCIALGSTFTHVAWARDYFNPAFIENHGQANRTSVDLSTFDNDKSQLPGTYYVTININKTEIGAR NVDFQLATLSDGQQALQGCLRLQELKDNGVKTDLFPTLESEKGCVDLSVIPGASQRFDFQQQALSVSIPQLYIANNARGY VPPEKWQEGITALMLNYSFSGYKEYGSSEDSDDAESKYLALQPGFNLGPWRFRNYSNWSSNNGENGSWNSVYNYLQRDII ALKSQFTAGDSNTPSDVFDSVPFRGLQLTSDDQMQPNSQRGYAPTIRGIARSNAQVIVRQNGYIAYQTAVSPGEFEINDM FPTGSNGDYDVTVKEADGSEQHFIVPYSSLPILQRTGRAKYSVTVGKYRDYNNHALDDFGQATLLYGLPWGITLYGGSQI AGDKYQSVAFGVGQNMQMLGAISLDGIWSHAKFDDGRKEIGQSWHVRYSKGVVSTGTTFSLAGYRYASENYNSLSEVINP DDDFYDNYGKRHNRFEASVNQQISNTLGSLTLSWVKEDYWHSAQQMESLSASYNNSWGPVSYTLSYSYNKNTYQYRSDND DDDNDDDRYNQNDRLFTLSLHVPFTVFDSRLYASYMLNTRKHDATVNSTTLSGTALRDRNLNWSLQQSHSTQDGDSGGVN ASYKGTYANLNAGYNQSPDSQQVSYGISGGILAHENGITLSQPITGAAILIKAPGASGVSVENQTGVATDFRGYTVIPNV TPYYRYDISLDSSTFADNVDIPLNNQTVYPTRNAVVRAAYDTHKGYRVLLTLTRSNGEPVPFGATASVDGQDANLASIVG DKGQVFLSGLPEEGLLLVNWGSASCRADYRLDISKNMNGIVMANAVCQ
Specific function: Involved in the export and assembly of lpfA fimbrial subunits across the outer membrane [H]
COG id: COG3188
COG function: function code NU; P pilus assembly protein, porin PapC
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1790772, Length=892, Percent_Identity=38.677130044843, Blast_Score=578, Evalue=1e-166, Organism=Escherichia coli, GI1787172, Length=891, Percent_Identity=39.0572390572391, Blast_Score=573, Evalue=1e-164, Organism=Escherichia coli, GI1786744, Length=875, Percent_Identity=37.7142857142857, Blast_Score=563, Evalue=1e-161, Organism=Escherichia coli, GI1789533, Length=860, Percent_Identity=37.6744186046512, Blast_Score=540, Evalue=1e-154, Organism=Escherichia coli, GI1786332, Length=883, Percent_Identity=30.6908267270668, Blast_Score=361, Evalue=1e-100, Organism=Escherichia coli, GI1788427, Length=776, Percent_Identity=31.8298969072165, Blast_Score=350, Evalue=2e-97, Organism=Escherichia coli, GI87081778, Length=809, Percent_Identity=27.5648949320148, Blast_Score=265, Evalue=1e-71, Organism=Escherichia coli, GI1789610, Length=780, Percent_Identity=25.7692307692308, Blast_Score=161, Evalue=1e-40,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 93928; Mature: 93928
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKRQHRVFYLSRCAVCIALGSTFTHVAWARDYFNPAFIENHGQANRTSVDLSTFDNDKS CCCCCCCEEEHHHHHEEHHHCCHHHHHHHHHHCCCCCEEECCCCCCCEEEEEEECCCCHH QLPGTYYVTININKTEIGARNVDFQLATLSDGQQALQGCLRLQELKDNGVKTDLFPTLES HCCEEEEEEEEEEHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEECCCCCCCC EKGCVDLSVIPGASQRFDFQQQALSVSIPQLYIANNARGYVPPEKWQEGITALMLNYSFS CCCEEEEEECCCCCCCCCHHHHHHEEECCEEEEECCCCCCCCHHHHHCCCEEEEEECCCC GYKEYGSSEDSDDAESKYLALQPGFNLGPWRFRNYSNWSSNNGENGSWNSVYNYLQRDII CHHHCCCCCCCCCCCCCEEEECCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH ALKSQFTAGDSNTPSDVFDSVPFRGLQLTSDDQMQPNSQRGYAPTIRGIARSNAQVIVRQ HHHHHCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEE NGYIAYQTAVSPGEFEINDMFPTGSNGDYDVTVKEADGSEQHFIVPYSSLPILQRTGRAK CCEEEEEEECCCCCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCHHHHCCCEE YSVTVGKYRDYNNHALDDFGQATLLYGLPWGITLYGGSQIAGDKYQSVAFGVGQNMQMLG EEEEECCCCCCCCCCCHHCCCEEEEEECCCEEEEECCCEECCCCHHEEEECCCCCEEEEE AISLDGIWSHAKFDDGRKEIGQSWHVRYSKGVVSTGTTFSLAGYRYASENYNSLSEVINP EEEECCCCCCCCCCCCHHHCCCCEEEEEECCEEECCCEEEEEEEEECCCCHHHHHHHCCC DDDFYDNYGKRHNRFEASVNQQISNTLGSLTLSWVKEDYWHSAQQMESLSASYNNSWGPV CHHHHHHCCCCCCHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCE SYTLSYSYNKNTYQYRSDNDDDDNDDDRYNQNDRLFTLSLHVPFTVFDSRLYASYMLNTR EEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCEEEHHHHHHHHHHHCCC KHDATVNSTTLSGTALRDRNLNWSLQQSHSTQDGDSGGVNASYKGTYANLNAGYNQSPDS CCCCEECCEEECCCEEECCCCCEEECCCCCCCCCCCCCCCCEECCEEEECCCCCCCCCCC QQVSYGISGGILAHENGITLSQPITGAAILIKAPGASGVSVENQTGVATDFRGYTVIPNV CEEEECCCCCEEEECCCCEECCCCCCEEEEEECCCCCCCEECCCCCCEECCCCEEECCCC TPYYRYDISLDSSTFADNVDIPLNNQTVYPTRNAVVRAAYDTHKGYRVLLTLTRSNGEPV CCEEEEEEEECCCCCCCCCCCCCCCCEECCCCCEEEEEEECCCCCEEEEEEEECCCCCCC PFGATASVDGQDANLASIVGDKGQVFLSGLPEEGLLLVNWGSASCRADYRLDISKNMNGI CCCCEECCCCCCCCCCEEECCCCCEEEECCCCCCEEEEECCCCCCCEEEEEEECCCCCEE VMANAVCQ EEECEECC >Mature Secondary Structure MRKRQHRVFYLSRCAVCIALGSTFTHVAWARDYFNPAFIENHGQANRTSVDLSTFDNDKS CCCCCCCEEEHHHHHEEHHHCCHHHHHHHHHHCCCCCEEECCCCCCCEEEEEEECCCCHH QLPGTYYVTININKTEIGARNVDFQLATLSDGQQALQGCLRLQELKDNGVKTDLFPTLES HCCEEEEEEEEEEHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEECCCCCCCC EKGCVDLSVIPGASQRFDFQQQALSVSIPQLYIANNARGYVPPEKWQEGITALMLNYSFS CCCEEEEEECCCCCCCCCHHHHHHEEECCEEEEECCCCCCCCHHHHHCCCEEEEEECCCC GYKEYGSSEDSDDAESKYLALQPGFNLGPWRFRNYSNWSSNNGENGSWNSVYNYLQRDII CHHHCCCCCCCCCCCCCEEEECCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH ALKSQFTAGDSNTPSDVFDSVPFRGLQLTSDDQMQPNSQRGYAPTIRGIARSNAQVIVRQ HHHHHCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEE NGYIAYQTAVSPGEFEINDMFPTGSNGDYDVTVKEADGSEQHFIVPYSSLPILQRTGRAK CCEEEEEEECCCCCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCHHHHCCCEE YSVTVGKYRDYNNHALDDFGQATLLYGLPWGITLYGGSQIAGDKYQSVAFGVGQNMQMLG EEEEECCCCCCCCCCCHHCCCEEEEEECCCEEEEECCCEECCCCHHEEEECCCCCEEEEE AISLDGIWSHAKFDDGRKEIGQSWHVRYSKGVVSTGTTFSLAGYRYASENYNSLSEVINP EEEECCCCCCCCCCCCHHHCCCCEEEEEECCEEECCCEEEEEEEEECCCCHHHHHHHCCC DDDFYDNYGKRHNRFEASVNQQISNTLGSLTLSWVKEDYWHSAQQMESLSASYNNSWGPV CHHHHHHCCCCCCHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCE SYTLSYSYNKNTYQYRSDNDDDDNDDDRYNQNDRLFTLSLHVPFTVFDSRLYASYMLNTR EEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCEEEHHHHHHHHHHHCCC KHDATVNSTTLSGTALRDRNLNWSLQQSHSTQDGDSGGVNASYKGTYANLNAGYNQSPDS CCCCEECCEEECCCEEECCCCCEEECCCCCCCCCCCCCCCCEECCEEEECCCCCCCCCCC QQVSYGISGGILAHENGITLSQPITGAAILIKAPGASGVSVENQTGVATDFRGYTVIPNV CEEEECCCCCEEEECCCCEECCCCCCEEEEEECCCCCCCEECCCCCCEECCCCEEECCCC TPYYRYDISLDSSTFADNVDIPLNNQTVYPTRNAVVRAAYDTHKGYRVLLTLTRSNGEPV CCEEEEEEEECCCCCCCCCCCCCCCCEECCCCCEEEEEEECCCCCEEEEEEEECCCCCCC PFGATASVDGQDANLASIVGDKGQVFLSGLPEEGLLLVNWGSASCRADYRLDISKNMNGI CCCCEECCCCCCCCCCEEECCCCCEEEECCCCCCEEEEECCCCCCCEEEEEEECCCCCEE VMANAVCQ EEECEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7721701; 11677609 [H]