Definition Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession NC_010334
Length 5,226,917

Click here to switch to the map view.

The map label for this gene is 167625760

Identifier: 167625760

GI number: 167625760

Start: 4676676

End: 4677332

Strand: Reverse

Name: 167625760

Synonym: Shal_3855

Alternate gene names: NA

Gene position: 4677332-4676676 (Counterclockwise)

Preceding gene: 167625761

Following gene: 167625759

Centisome position: 89.49

GC content: 42.47

Gene sequence:

>657_bases
ATGAAGCAGCAGTGGAATAAGTTAGCCGAAAAATTTGACGCCTTAAGTCAGCGTGAAAGAGTCTTGGTTGCAGCCGCAGC
GCTGATCGTTGCTGGTTTACTGTTTTATCTACCGCTCGAGTCGGCTTTGAAGCAGCACGGTAAACTCAATGAGCAGATCC
GAGTTGTTGAAAGTGAAAATAGGATCTCTGAACAGCAAATACAGCTTTATGAGGACAGTCTTCGAAAAGATCCTGATGAA
GATTATCGTCAGCGTTTAAATAATATTAACCAGCAGAATAAATCGATTGATGAACAGCTCTCTTATCAGATGGTGGATAT
GGTGCCAGCTGATCATATGCCGACCCTGCTGGCTGGTCTGCTTTCTAAGATAAAAGGGATCAAGCTGAAATCCTTTACTT
CAATTGCGCCAACTCCGTTATTGGAGGTCGGTGAAGATAAGAAGGTTAATCTATATAGCCACGGTATCCGTCTCGAATTT
GTCGGTGATTACTTTGCGGTAATGCGGTTTGTGGAAGCCGTCGAAAATATGCCAAATAAGCTTTACTGGCGCAGTATGGA
CTATCAAGTTGATACATACCCTAAGGCCACGGTTTCATTAGAGCTTTATACCTTGAGTATTAATAAGGACTTTATCAGTG
TTGCCAAAAAAGACTAG

Upstream 100 bases:

>100_bases
GTCATGCTTTTGCAACTATGACGATGAATCTCGGTGAAAACCAGCCGCTTGCCTTTAAGTTGACAAGCGATGCGACTCCT
ACCGGTAAGGAGTTGATTAA

Downstream 100 bases:

>100_bases
TGCGCTATTGATTGCTTTCTTGTGCAGTACTTTAGGTTTTAACCTTAACGCTGCAACGCTAAGAGATCCGACGAGGCCTG
GTAATTTTTCAGGAAATACC

Product: MSHA biogenesis protein MshJ

Products: NA

Alternate protein names: Glucose-6-Phosphate Isomerase; Msha Biogenesis Protein Mshj; MshA Biogenesis Protein MshJ-Like Protein; MshA Biogenesis Protein MshJ-Like; Type IV Pilus Mannose-Sensitive Hemagglutinin D

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MKQQWNKLAEKFDALSQRERVLVAAAALIVAGLLFYLPLESALKQHGKLNEQIRVVESENRISEQQIQLYEDSLRKDPDE
DYRQRLNNINQQNKSIDEQLSYQMVDMVPADHMPTLLAGLLSKIKGIKLKSFTSIAPTPLLEVGEDKKVNLYSHGIRLEF
VGDYFAVMRFVEAVENMPNKLYWRSMDYQVDTYPKATVSLELYTLSINKDFISVAKKD

Sequences:

>Translated_218_residues
MKQQWNKLAEKFDALSQRERVLVAAAALIVAGLLFYLPLESALKQHGKLNEQIRVVESENRISEQQIQLYEDSLRKDPDE
DYRQRLNNINQQNKSIDEQLSYQMVDMVPADHMPTLLAGLLSKIKGIKLKSFTSIAPTPLLEVGEDKKVNLYSHGIRLEF
VGDYFAVMRFVEAVENMPNKLYWRSMDYQVDTYPKATVSLELYTLSINKDFISVAKKD
>Mature_218_residues
MKQQWNKLAEKFDALSQRERVLVAAAALIVAGLLFYLPLESALKQHGKLNEQIRVVESENRISEQQIQLYEDSLRKDPDE
DYRQRLNNINQQNKSIDEQLSYQMVDMVPADHMPTLLAGLLSKIKGIKLKSFTSIAPTPLLEVGEDKKVNLYSHGIRLEF
VGDYFAVMRFVEAVENMPNKLYWRSMDYQVDTYPKATVSLELYTLSINKDFISVAKKD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25132; Mature: 25132

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQQWNKLAEKFDALSQRERVLVAAAALIVAGLLFYLPLESALKQHGKLNEQIRVVESEN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEECCCC
RISEQQIQLYEDSLRKDPDEDYRQRLNNINQQNKSIDEQLSYQMVDMVPADHMPTLLAGL
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
LSKIKGIKLKSFTSIAPTPLLEVGEDKKVNLYSHGIRLEFVGDYFAVMRFVEAVENMPNK
HHHHCCCCCCCCCCCCCCCHHCCCCCCEEEEEECCEEEEEHHHHHHHHHHHHHHHCCCHH
LYWRSMDYQVDTYPKATVSLELYTLSINKDFISVAKKD
HEEECCCCEECCCCCEEEEEEEEEEEECHHHHHHHCCC
>Mature Secondary Structure
MKQQWNKLAEKFDALSQRERVLVAAAALIVAGLLFYLPLESALKQHGKLNEQIRVVESEN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEECCCC
RISEQQIQLYEDSLRKDPDEDYRQRLNNINQQNKSIDEQLSYQMVDMVPADHMPTLLAGL
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
LSKIKGIKLKSFTSIAPTPLLEVGEDKKVNLYSHGIRLEFVGDYFAVMRFVEAVENMPNK
HHHHCCCCCCCCCCCCCCCHHCCCCCCEEEEEECCEEEEEHHHHHHHHHHHHHHHCCCHH
LYWRSMDYQVDTYPKATVSLELYTLSINKDFISVAKKD
HEEECCCCEECCCCCEEEEEEEEEEEECHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA