Definition Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession NC_010334
Length 5,226,917

Click here to switch to the map view.

The map label for this gene is 167625752

Identifier: 167625752

GI number: 167625752

Start: 4668324

End: 4668932

Strand: Reverse

Name: 167625752

Synonym: Shal_3847

Alternate gene names: NA

Gene position: 4668932-4668324 (Counterclockwise)

Preceding gene: 167625753

Following gene: 167625751

Centisome position: 89.32

GC content: 45.98

Gene sequence:

>609_bases
ATGAAACAACAGTATCAAAAGGGCTTCTCCCTTATCGAATTAGTCATAGTCATCGTGATCTTAGGCTTGTTAGCTGCGAC
GGCTATACCACGTTTTTTAAACGTAACTGATGATGCTGAAGATGCCAGTGTAGACGGCGTAGCCGGTGGCTTGAGCACTG
CGGTGAGCTTTGTTCGCTCACAATGGGAAGTCGACGGTCGTCGTAATAATTCAGTTCTGTTGGACGGTACTAATGTATCG
CTGGATACTCGTTTTGGTTATCCGACGGGTCTTAGCAATACCGATGCTAAAGGCATGGACCAAAATTCTTGCCAGGAAGT
ATTTGATCTTGTTTTACAAAATGCACCACGAAGCGTAGTTTCAGGAGTCGACGCGCGTAAAGCAAGATATGTAGTGAGCG
TGGCAAAAGGAGCGGGTGGTAGCTCAAACACTATAGATGGCGAGCTTGTTAGCGGTCTTGATGTTTGTTTGTATTACCTC
GCCTCATCACTGGTGTTGAATTCACAAACGGGCATACCGACAGAGGATTTAACGGACTTAAATAATTTGGCGGGCAAAGG
GGTGACTTATAACCCAGGCTCAGGCCAAGTGGCGAGTTTTATTGACTAA

Upstream 100 bases:

>100_bases
TTTTTGACAGAGGCCCGTTAGGCGCCTAAAAAGAGTGAAATTATCTGTTTTCTAATTTTAACAAACTGCTAGAATAGCCA
TATACAAAACTGGGGGTAAA

Downstream 100 bases:

>100_bases
ACTAACTTAACTACTATTTAGTAGCTCTTAGTGAAGACGTTAATAGCAAAAGTTAATAGTTTACAGCTGACAGGTATTAG
CCGTCCGCTGTATTTGATAT

Product: methylation site containing protein

Products: NA

Alternate protein names: Methylation Site Containing Protein; Pilin Protein; Prepilin-Type Cleavage/Methylation; Msha Pilin Protein Mshb; Methylation

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MKQQYQKGFSLIELVIVIVILGLLAATAIPRFLNVTDDAEDASVDGVAGGLSTAVSFVRSQWEVDGRRNNSVLLDGTNVS
LDTRFGYPTGLSNTDAKGMDQNSCQEVFDLVLQNAPRSVVSGVDARKARYVVSVAKGAGGSSNTIDGELVSGLDVCLYYL
ASSLVLNSQTGIPTEDLTDLNNLAGKGVTYNPGSGQVASFID

Sequences:

>Translated_202_residues
MKQQYQKGFSLIELVIVIVILGLLAATAIPRFLNVTDDAEDASVDGVAGGLSTAVSFVRSQWEVDGRRNNSVLLDGTNVS
LDTRFGYPTGLSNTDAKGMDQNSCQEVFDLVLQNAPRSVVSGVDARKARYVVSVAKGAGGSSNTIDGELVSGLDVCLYYL
ASSLVLNSQTGIPTEDLTDLNNLAGKGVTYNPGSGQVASFID
>Mature_202_residues
MKQQYQKGFSLIELVIVIVILGLLAATAIPRFLNVTDDAEDASVDGVAGGLSTAVSFVRSQWEVDGRRNNSVLLDGTNVS
LDTRFGYPTGLSNTDAKGMDQNSCQEVFDLVLQNAPRSVVSGVDARKARYVVSVAKGAGGSSNTIDGELVSGLDVCLYYL
ASSLVLNSQTGIPTEDLTDLNNLAGKGVTYNPGSGQVASFID

Specific function: Unknown

COG id: COG2165

COG function: function code NU; Type II secretory pathway, pseudopilin PulG

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21242; Mature: 21242

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQQYQKGFSLIELVIVIVILGLLAATAIPRFLNVTDDAEDASVDGVAGGLSTAVSFVRS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
QWEVDGRRNNSVLLDGTNVSLDTRFGYPTGLSNTDAKGMDQNSCQEVFDLVLQNAPRSVV
HHHCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHH
SGVDARKARYVVSVAKGAGGSSNTIDGELVSGLDVCLYYLASSLVLNSQTGIPTEDLTDL
CCCHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
NNLAGKGVTYNPGSGQVASFID
HHHCCCCCEECCCCCCHHCCCC
>Mature Secondary Structure
MKQQYQKGFSLIELVIVIVILGLLAATAIPRFLNVTDDAEDASVDGVAGGLSTAVSFVRS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
QWEVDGRRNNSVLLDGTNVSLDTRFGYPTGLSNTDAKGMDQNSCQEVFDLVLQNAPRSVV
HHHCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHH
SGVDARKARYVVSVAKGAGGSSNTIDGELVSGLDVCLYYLASSLVLNSQTGIPTEDLTDL
CCCHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
NNLAGKGVTYNPGSGQVASFID
HHHCCCCCEECCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA