| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167625747
Identifier: 167625747
GI number: 167625747
Start: 4665040
End: 4665924
Strand: Reverse
Name: 167625747
Synonym: Shal_3842
Alternate gene names: NA
Gene position: 4665924-4665040 (Counterclockwise)
Preceding gene: 167625748
Following gene: 167625746
Centisome position: 89.27
GC content: 47.91
Gene sequence:
>885_bases ATGCAATCGTTAATACGTCCAGCTTCGAGGTTGCAATTAAGCAAACTGAAACAGCTTAGAAGCCGCGGCTTCACCTTGGT GGAGATGATCACAGTGGTGATTATCTTAGGTGTGTTAGTGCTTGGAGTCAGTAGCTTTCTGCTTTTTGGCACTCGCATTT TTATCAACGCCACTTCGGTCGACCAAGTGATGAGTCAGAGCCGTTTCGCTATCGAGCGCATGACCCGAGAGATCCGTAAC GCCGCGCCAAACAGTATTCGTGTCCGCGATAGTGGTGATGGTGCTTGGCAATGTATCGAGATGATGCCGATTATCTCTAG CGCGTCTTATATCGATATGCCTATCGCGCCAGCCTCTGCTGCTAGTAGTGGCACTGCGATGCAATCCAGTGCCAGCGCGC CTTTAAACGCGGATCAATTTTTGCTGATTTATCCACTGTCAGCAACCGATGTTTATACCTCAACAACTGGCTCGCAGGGC AAGTTATTTAGTATCAAGTCAATTACAGCGAATAGCACCAATGATCTTAGTATCGATTTTGGCCGAGCCGTTCGTTTCGA TGCCGCCTCTCCACGGCAGCGTTACTTTGGTGTTCAAGATGCGGTGAGTTTCTGTTTCGAGCGAGTAACTCCAGAGCTGA GTTTATTAAAGCGTTACGCGGGCTACGGCTTTAATCACCCCAATTTACAGCCAGCACCTAATGATATGGGCACGGGAGTG TTGATGGCCGAAAATATCGTCAATACTATAGGTAACAATAGCCCTATTGCGTATACCCCGGGGACGCTACGCAACAATGC CATGGTGCATCTGAGTCCGTTGTTTGATGTGCAAGGGCAAACGTTTCAATATCATCATCAAGTGCAGGTGATTAATGTTC CATAA
Upstream 100 bases:
>100_bases ATAACAATTTACCTAGCCTAAATACTAAGCTTATTACTATCAATGTCACCACGCCCAATGGCGAGGTGATGACTTTCAAT GCGATCAGGAGCAACTATTA
Downstream 100 bases:
>100_bases CAGCATGCGATTCCTCTCTAGCCGCAACCGTGTCTCTCTGAAAGCTTTGGGGTCTATGAGCTCAGGCTCTATGAACTCAG GCTCTAGTATGAGCTCTGGG
Product: methylation site containing protein
Products: NA
Alternate protein names: Methylation Site Containing Protein; Type II Secretory Pathway Pseudopilin PulG; Msha Biogenesis Protein Msho; Mannose-Sensitive Agglutinin; Prepilin-Type Cleavage/Methylation; Tfp-Like Pilus Assembly Protein; General Secretion Pathway Protein H; MshO Protein
Number of amino acids: Translated: 294; Mature: 294
Protein sequence:
>294_residues MQSLIRPASRLQLSKLKQLRSRGFTLVEMITVVIILGVLVLGVSSFLLFGTRIFINATSVDQVMSQSRFAIERMTREIRN AAPNSIRVRDSGDGAWQCIEMMPIISSASYIDMPIAPASAASSGTAMQSSASAPLNADQFLLIYPLSATDVYTSTTGSQG KLFSIKSITANSTNDLSIDFGRAVRFDAASPRQRYFGVQDAVSFCFERVTPELSLLKRYAGYGFNHPNLQPAPNDMGTGV LMAENIVNTIGNNSPIAYTPGTLRNNAMVHLSPLFDVQGQTFQYHHQVQVINVP
Sequences:
>Translated_294_residues MQSLIRPASRLQLSKLKQLRSRGFTLVEMITVVIILGVLVLGVSSFLLFGTRIFINATSVDQVMSQSRFAIERMTREIRN AAPNSIRVRDSGDGAWQCIEMMPIISSASYIDMPIAPASAASSGTAMQSSASAPLNADQFLLIYPLSATDVYTSTTGSQG KLFSIKSITANSTNDLSIDFGRAVRFDAASPRQRYFGVQDAVSFCFERVTPELSLLKRYAGYGFNHPNLQPAPNDMGTGV LMAENIVNTIGNNSPIAYTPGTLRNNAMVHLSPLFDVQGQTFQYHHQVQVINVP >Mature_294_residues MQSLIRPASRLQLSKLKQLRSRGFTLVEMITVVIILGVLVLGVSSFLLFGTRIFINATSVDQVMSQSRFAIERMTREIRN AAPNSIRVRDSGDGAWQCIEMMPIISSASYIDMPIAPASAASSGTAMQSSASAPLNADQFLLIYPLSATDVYTSTTGSQG KLFSIKSITANSTNDLSIDFGRAVRFDAASPRQRYFGVQDAVSFCFERVTPELSLLKRYAGYGFNHPNLQPAPNDMGTGV LMAENIVNTIGNNSPIAYTPGTLRNNAMVHLSPLFDVQGQTFQYHHQVQVINVP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32092; Mature: 32092
Theoretical pI: Translated: 9.35; Mature: 9.35
Prosite motif: PS00409 PROKAR_NTER_METHYL
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQSLIRPASRLQLSKLKQLRSRGFTLVEMITVVIILGVLVLGVSSFLLFGTRIFINATSV CCHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHH DQVMSQSRFAIERMTREIRNAAPNSIRVRDSGDGAWQCIEMMPIISSASYIDMPIAPASA HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEECCCCCCCC ASSGTAMQSSASAPLNADQFLLIYPLSATDVYTSTTGSQGKLFSIKSITANSTNDLSIDF CCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCEEEEEEEECCCCCCEEEEC GRAVRFDAASPRQRYFGVQDAVSFCFERVTPELSLLKRYAGYGFNHPNLQPAPNDMGTGV CCEEEECCCCCHHHHCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH LMAENIVNTIGNNSPIAYTPGTLRNNAMVHLSPLFDVQGQTFQYHHQVQVINVP HHHHHHHHHHCCCCCEEECCCCCCCCCEEEEEECCCCCCCEEEEEEEEEEEECC >Mature Secondary Structure MQSLIRPASRLQLSKLKQLRSRGFTLVEMITVVIILGVLVLGVSSFLLFGTRIFINATSV CCHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHH DQVMSQSRFAIERMTREIRNAAPNSIRVRDSGDGAWQCIEMMPIISSASYIDMPIAPASA HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEECCCCCCCC ASSGTAMQSSASAPLNADQFLLIYPLSATDVYTSTTGSQGKLFSIKSITANSTNDLSIDF CCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCEEEEEEEECCCCCCEEEEC GRAVRFDAASPRQRYFGVQDAVSFCFERVTPELSLLKRYAGYGFNHPNLQPAPNDMGTGV CCEEEECCCCCHHHHCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH LMAENIVNTIGNNSPIAYTPGTLRNNAMVHLSPLFDVQGQTFQYHHQVQVINVP HHHHHHHHHHCCCCCEEECCCCCCCCCEEEEEECCCCCCCEEEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA