Definition Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession NC_010334
Length 5,226,917

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The map label for this gene is 167625747

Identifier: 167625747

GI number: 167625747

Start: 4665040

End: 4665924

Strand: Reverse

Name: 167625747

Synonym: Shal_3842

Alternate gene names: NA

Gene position: 4665924-4665040 (Counterclockwise)

Preceding gene: 167625748

Following gene: 167625746

Centisome position: 89.27

GC content: 47.91

Gene sequence:

>885_bases
ATGCAATCGTTAATACGTCCAGCTTCGAGGTTGCAATTAAGCAAACTGAAACAGCTTAGAAGCCGCGGCTTCACCTTGGT
GGAGATGATCACAGTGGTGATTATCTTAGGTGTGTTAGTGCTTGGAGTCAGTAGCTTTCTGCTTTTTGGCACTCGCATTT
TTATCAACGCCACTTCGGTCGACCAAGTGATGAGTCAGAGCCGTTTCGCTATCGAGCGCATGACCCGAGAGATCCGTAAC
GCCGCGCCAAACAGTATTCGTGTCCGCGATAGTGGTGATGGTGCTTGGCAATGTATCGAGATGATGCCGATTATCTCTAG
CGCGTCTTATATCGATATGCCTATCGCGCCAGCCTCTGCTGCTAGTAGTGGCACTGCGATGCAATCCAGTGCCAGCGCGC
CTTTAAACGCGGATCAATTTTTGCTGATTTATCCACTGTCAGCAACCGATGTTTATACCTCAACAACTGGCTCGCAGGGC
AAGTTATTTAGTATCAAGTCAATTACAGCGAATAGCACCAATGATCTTAGTATCGATTTTGGCCGAGCCGTTCGTTTCGA
TGCCGCCTCTCCACGGCAGCGTTACTTTGGTGTTCAAGATGCGGTGAGTTTCTGTTTCGAGCGAGTAACTCCAGAGCTGA
GTTTATTAAAGCGTTACGCGGGCTACGGCTTTAATCACCCCAATTTACAGCCAGCACCTAATGATATGGGCACGGGAGTG
TTGATGGCCGAAAATATCGTCAATACTATAGGTAACAATAGCCCTATTGCGTATACCCCGGGGACGCTACGCAACAATGC
CATGGTGCATCTGAGTCCGTTGTTTGATGTGCAAGGGCAAACGTTTCAATATCATCATCAAGTGCAGGTGATTAATGTTC
CATAA

Upstream 100 bases:

>100_bases
ATAACAATTTACCTAGCCTAAATACTAAGCTTATTACTATCAATGTCACCACGCCCAATGGCGAGGTGATGACTTTCAAT
GCGATCAGGAGCAACTATTA

Downstream 100 bases:

>100_bases
CAGCATGCGATTCCTCTCTAGCCGCAACCGTGTCTCTCTGAAAGCTTTGGGGTCTATGAGCTCAGGCTCTATGAACTCAG
GCTCTAGTATGAGCTCTGGG

Product: methylation site containing protein

Products: NA

Alternate protein names: Methylation Site Containing Protein; Type II Secretory Pathway Pseudopilin PulG; Msha Biogenesis Protein Msho; Mannose-Sensitive Agglutinin; Prepilin-Type Cleavage/Methylation; Tfp-Like Pilus Assembly Protein; General Secretion Pathway Protein H; MshO Protein

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MQSLIRPASRLQLSKLKQLRSRGFTLVEMITVVIILGVLVLGVSSFLLFGTRIFINATSVDQVMSQSRFAIERMTREIRN
AAPNSIRVRDSGDGAWQCIEMMPIISSASYIDMPIAPASAASSGTAMQSSASAPLNADQFLLIYPLSATDVYTSTTGSQG
KLFSIKSITANSTNDLSIDFGRAVRFDAASPRQRYFGVQDAVSFCFERVTPELSLLKRYAGYGFNHPNLQPAPNDMGTGV
LMAENIVNTIGNNSPIAYTPGTLRNNAMVHLSPLFDVQGQTFQYHHQVQVINVP

Sequences:

>Translated_294_residues
MQSLIRPASRLQLSKLKQLRSRGFTLVEMITVVIILGVLVLGVSSFLLFGTRIFINATSVDQVMSQSRFAIERMTREIRN
AAPNSIRVRDSGDGAWQCIEMMPIISSASYIDMPIAPASAASSGTAMQSSASAPLNADQFLLIYPLSATDVYTSTTGSQG
KLFSIKSITANSTNDLSIDFGRAVRFDAASPRQRYFGVQDAVSFCFERVTPELSLLKRYAGYGFNHPNLQPAPNDMGTGV
LMAENIVNTIGNNSPIAYTPGTLRNNAMVHLSPLFDVQGQTFQYHHQVQVINVP
>Mature_294_residues
MQSLIRPASRLQLSKLKQLRSRGFTLVEMITVVIILGVLVLGVSSFLLFGTRIFINATSVDQVMSQSRFAIERMTREIRN
AAPNSIRVRDSGDGAWQCIEMMPIISSASYIDMPIAPASAASSGTAMQSSASAPLNADQFLLIYPLSATDVYTSTTGSQG
KLFSIKSITANSTNDLSIDFGRAVRFDAASPRQRYFGVQDAVSFCFERVTPELSLLKRYAGYGFNHPNLQPAPNDMGTGV
LMAENIVNTIGNNSPIAYTPGTLRNNAMVHLSPLFDVQGQTFQYHHQVQVINVP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32092; Mature: 32092

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSLIRPASRLQLSKLKQLRSRGFTLVEMITVVIILGVLVLGVSSFLLFGTRIFINATSV
CCHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHH
DQVMSQSRFAIERMTREIRNAAPNSIRVRDSGDGAWQCIEMMPIISSASYIDMPIAPASA
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEECCCCCCCC
ASSGTAMQSSASAPLNADQFLLIYPLSATDVYTSTTGSQGKLFSIKSITANSTNDLSIDF
CCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCEEEEEEEECCCCCCEEEEC
GRAVRFDAASPRQRYFGVQDAVSFCFERVTPELSLLKRYAGYGFNHPNLQPAPNDMGTGV
CCEEEECCCCCHHHHCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH
LMAENIVNTIGNNSPIAYTPGTLRNNAMVHLSPLFDVQGQTFQYHHQVQVINVP
HHHHHHHHHHCCCCCEEECCCCCCCCCEEEEEECCCCCCCEEEEEEEEEEEECC
>Mature Secondary Structure
MQSLIRPASRLQLSKLKQLRSRGFTLVEMITVVIILGVLVLGVSSFLLFGTRIFINATSV
CCHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHH
DQVMSQSRFAIERMTREIRNAAPNSIRVRDSGDGAWQCIEMMPIISSASYIDMPIAPASA
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEECCCCCCCC
ASSGTAMQSSASAPLNADQFLLIYPLSATDVYTSTTGSQGKLFSIKSITANSTNDLSIDF
CCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCEEEEEEEECCCCCCEEEEC
GRAVRFDAASPRQRYFGVQDAVSFCFERVTPELSLLKRYAGYGFNHPNLQPAPNDMGTGV
CCEEEECCCCCHHHHCCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH
LMAENIVNTIGNNSPIAYTPGTLRNNAMVHLSPLFDVQGQTFQYHHQVQVINVP
HHHHHHHHHHCCCCCEEECCCCCCCCCEEEEEECCCCCCCEEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA