| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is hisC [H]
Identifier: 167625649
GI number: 167625649
Start: 4543018
End: 4544178
Strand: Reverse
Name: hisC [H]
Synonym: Shal_3744
Alternate gene names: 167625649
Gene position: 4544178-4543018 (Counterclockwise)
Preceding gene: 167625650
Following gene: 167625648
Centisome position: 86.94
GC content: 50.04
Gene sequence:
>1161_bases ATGCAAAACTCTTCTTTCAAGTTAAGTCGTCGTCAATTCTTATATGCAGGTGCCGCCGCATCAAGTTTAGCGACCTTAGG TTGCAGCTCAACCTCAATCTCTACTGCAGCAAGTTCGTTAGCATCGGCCTCGATGAGTACGGATGAGCCGATCCCGCTTA ATTTTAATGAGAACCCACTCGGCTTGGCACCTAAAGCCCAGCAAGCAGTTACCGATGCGTTGCCCAATGCTTGGCGTTAC CCCGATGCGGCCCGAAGTGAGCTGATGGCGAGTATTGCTGGCAATTTGGGGCTTATAGAGTCGCAGTTAATCTATGGTAA TGGCTCCTCTGAAGTGCTTAAGATGGCGCTTGATGCCCTCGCGCAAAGCAATAGCCAGTTGGTGATGCCAGATCCAAGTT ATGGGGTGATAATCGATTACGCCATGGCGCGTGGAATCCCTGTGGTCAAGGTCAAGCTCGATGGTGACTGGCAAACCGAT TTAGCCCAGATGCAAGCAAAAGTGGCTCAGCATAATGGCCCGTCGATTGTGTACCTGTGTAACCCTAATAATCCAACGGG ATTAGTATTACCACAGAGTGAGCTGAATCAGTGGTTAGATAAGGCATCGAGTCAACTAAGCTTTATCATTGATGAGGCCT ATGTGGAGTATGTCGCTCAAGCTGGGTTTGTGTCTGCGGTTGAACGGGTGAAGCAAGGTCAGTCACATATTGTGGTGTGT CGAACCTTCTCAAAAATCTACGCCCTTGCTGGGCTACGTGTCGGTTACGGCGTGGCGCATAGCGAGCTCATTAAGGCGAT GCAGGCGCAGGCAAGTATCGATAATGCCAATCTAATCGGCTGCGTCGCGGCTAAGGCTAGCCTCGAGAGTTCACAGTGGC TAGGGTTGAGTTTGCAATCAAACAGTCAAGCCAAAGCCTTGGTATATCAGCAGCTAAGCGAGCTTGGTTTAGATTATCTA CCGAGCGAGACTAACTTTATCTTTCACAAAGTTAATGGCGATAGCGGGCTGTATATGCAACGCATGGCAAAGGCAGGCAT TTTGGTCGGCCGCCCATTTAACCATGGTGAAGGCTGGAACCGTCTCTCTATCGGCACACCCGCGCAGATGCAATACTTCT GTAAGACCTTGGCAAAGTTTCGCGAGTTGGGCTGGGTGTAA
Upstream 100 bases:
>100_bases AGTGTGATCTTGGCTACAAATCTAGTCTGCTAGACTAGCGATAGTGAGTCGTTAATAAGAATATCTAGTGTATATATTAA TTCAATAATAATAACTAAGT
Downstream 100 bases:
>100_bases TTAACGGTTGGGGGTCGATAGCTAATCTTAGCGAGTTAATCAGTATTGCGGCAAAGCAATACTGATCCTCAGTTAACTGA AGTATCATGGAGCCACAGGT
Product: class I/II aminotransferase
Products: NA
Alternate protein names: Imidazole acetol-phosphate transaminase [H]
Number of amino acids: Translated: 386; Mature: 386
Protein sequence:
>386_residues MQNSSFKLSRRQFLYAGAAASSLATLGCSSTSISTAASSLASASMSTDEPIPLNFNENPLGLAPKAQQAVTDALPNAWRY PDAARSELMASIAGNLGLIESQLIYGNGSSEVLKMALDALAQSNSQLVMPDPSYGVIIDYAMARGIPVVKVKLDGDWQTD LAQMQAKVAQHNGPSIVYLCNPNNPTGLVLPQSELNQWLDKASSQLSFIIDEAYVEYVAQAGFVSAVERVKQGQSHIVVC RTFSKIYALAGLRVGYGVAHSELIKAMQAQASIDNANLIGCVAAKASLESSQWLGLSLQSNSQAKALVYQQLSELGLDYL PSETNFIFHKVNGDSGLYMQRMAKAGILVGRPFNHGEGWNRLSIGTPAQMQYFCKTLAKFRELGWV
Sequences:
>Translated_386_residues MQNSSFKLSRRQFLYAGAAASSLATLGCSSTSISTAASSLASASMSTDEPIPLNFNENPLGLAPKAQQAVTDALPNAWRY PDAARSELMASIAGNLGLIESQLIYGNGSSEVLKMALDALAQSNSQLVMPDPSYGVIIDYAMARGIPVVKVKLDGDWQTD LAQMQAKVAQHNGPSIVYLCNPNNPTGLVLPQSELNQWLDKASSQLSFIIDEAYVEYVAQAGFVSAVERVKQGQSHIVVC RTFSKIYALAGLRVGYGVAHSELIKAMQAQASIDNANLIGCVAAKASLESSQWLGLSLQSNSQAKALVYQQLSELGLDYL PSETNFIFHKVNGDSGLYMQRMAKAGILVGRPFNHGEGWNRLSIGTPAQMQYFCKTLAKFRELGWV >Mature_386_residues MQNSSFKLSRRQFLYAGAAASSLATLGCSSTSISTAASSLASASMSTDEPIPLNFNENPLGLAPKAQQAVTDALPNAWRY PDAARSELMASIAGNLGLIESQLIYGNGSSEVLKMALDALAQSNSQLVMPDPSYGVIIDYAMARGIPVVKVKLDGDWQTD LAQMQAKVAQHNGPSIVYLCNPNNPTGLVLPQSELNQWLDKASSQLSFIIDEAYVEYVAQAGFVSAVERVKQGQSHIVVC RTFSKIYALAGLRVGYGVAHSELIKAMQAQASIDNANLIGCVAAKASLESSQWLGLSLQSNSQAKALVYQQLSELGLDYL PSETNFIFHKVNGDSGLYMQRMAKAGILVGRPFNHGEGWNRLSIGTPAQMQYFCKTLAKFRELGWV
Specific function: Histidine biosynthesis; seventh step. [C]
COG id: COG0079
COG function: function code E; Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily [H]
Homologues:
Organism=Escherichia coli, GI1788332, Length=331, Percent_Identity=25.6797583081571, Blast_Score=97, Evalue=2e-21, Organism=Saccharomyces cerevisiae, GI6322075, Length=371, Percent_Identity=24.7978436657682, Blast_Score=75, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004839 - InterPro: IPR005861 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00155 Aminotran_1_2 [H]
EC number: =2.6.1.9 [H]
Molecular weight: Translated: 41555; Mature: 41555
Theoretical pI: Translated: 7.02; Mature: 7.02
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQNSSFKLSRRQFLYAGAAASSLATLGCSSTSISTAASSLASASMSTDEPIPLNFNENPL CCCCCCCHHHHHHEEECHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC GLAPKAQQAVTDALPNAWRYPDAARSELMASIAGNLGLIESQLIYGNGSSEVLKMALDAL CCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEECEEEECCCHHHHHHHHHHHH AQSNSQLVMPDPSYGVIIDYAMARGIPVVKVKLDGDWQTDLAQMQAKVAQHNGPSIVYLC HCCCCEEEECCCCCCEEEEEHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEE NPNNPTGLVLPQSELNQWLDKASSQLSFIIDEAYVEYVAQAGFVSAVERVKQGQSHIVVC CCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE RTFSKIYALAGLRVGYGVAHSELIKAMQAQASIDNANLIGCVAAKASLESSQWLGLSLQS HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCEEEEEECC NSQAKALVYQQLSELGLDYLPSETNFIFHKVNGDSGLYMQRMAKAGILVGRPFNHGEGWN CCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCEEEECCCCCCCCCC RLSIGTPAQMQYFCKTLAKFRELGWV EEECCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MQNSSFKLSRRQFLYAGAAASSLATLGCSSTSISTAASSLASASMSTDEPIPLNFNENPL CCCCCCCHHHHHHEEECHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC GLAPKAQQAVTDALPNAWRYPDAARSELMASIAGNLGLIESQLIYGNGSSEVLKMALDAL CCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEECEEEECCCHHHHHHHHHHHH AQSNSQLVMPDPSYGVIIDYAMARGIPVVKVKLDGDWQTDLAQMQAKVAQHNGPSIVYLC HCCCCEEEECCCCCCEEEEEHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEE NPNNPTGLVLPQSELNQWLDKASSQLSFIIDEAYVEYVAQAGFVSAVERVKQGQSHIVVC CCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE RTFSKIYALAGLRVGYGVAHSELIKAMQAQASIDNANLIGCVAAKASLESSQWLGLSLQS HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCCCCEEEEEECC NSQAKALVYQQLSELGLDYLPSETNFIFHKVNGDSGLYMQRMAKAGILVGRPFNHGEGWN CCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCEEEECCCCCCCCCC RLSIGTPAQMQYFCKTLAKFRELGWV EEECCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA