Definition Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession NC_010334
Length 5,226,917

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The map label for this gene is yeaR [H]

Identifier: 167625643

GI number: 167625643

Start: 4535423

End: 4535758

Strand: Reverse

Name: yeaR [H]

Synonym: Shal_3738

Alternate gene names: 167625643

Gene position: 4535758-4535423 (Counterclockwise)

Preceding gene: 167625644

Following gene: 167625642

Centisome position: 86.78

GC content: 44.64

Gene sequence:

>336_bases
ATGAGTCATTTACGCATCCCTAAAAATTGGACAATTCAGCGTTCAACTGCTTTTTTCACTAAAGATAATGTGCCAGCCGC
CTTACTGAGCCACCATAACACTGCCGAGGGAGTATTTGGTCAGTTATGTGTCATGGAGGGGGTGGTAACTTATTTCGGCT
TTGCCGATAGCGAAGCAACTGAGCCTGAATTAAAGGTGGTGATTGAGGCTGGGCAGTTTGCCACGAGCCCTCCCCAGTAT
TGGCATCGAATTGAACTAAGTGATGATGCCCAATTTAATATTAATTTCTGGTCAGAGTCAGATAAGTCCGATAAGCCTAT
GTTTCACACTAGGTAG

Upstream 100 bases:

>100_bases
TAACGCCTTTAGCTTACTAAAAGCATTACCGAGAACTTAATCCCTATATTGCTGCTGTGCTATTGGCTGGCAGCATCCGT
ATTTGCATTAGGAGAAGATG

Downstream 100 bases:

>100_bases
ACTATGAATGATTAAGATAAGAAGCCAGCCTTTGCTGGCTTTTCTATTTTAGTCTTAAATGTCTCTTCACCTTTGTTTTC
CAGGATTCAATGGTATAGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 110

Protein sequence:

>111_residues
MSHLRIPKNWTIQRSTAFFTKDNVPAALLSHHNTAEGVFGQLCVMEGVVTYFGFADSEATEPELKVVIEAGQFATSPPQY
WHRIELSDDAQFNINFWSESDKSDKPMFHTR

Sequences:

>Translated_111_residues
MSHLRIPKNWTIQRSTAFFTKDNVPAALLSHHNTAEGVFGQLCVMEGVVTYFGFADSEATEPELKVVIEAGQFATSPPQY
WHRIELSDDAQFNINFWSESDKSDKPMFHTR
>Mature_110_residues
SHLRIPKNWTIQRSTAFFTKDNVPAALLSHHNTAEGVFGQLCVMEGVVTYFGFADSEATEPELKVVIEAGQFATSPPQYW
HRIELSDDAQFNINFWSESDKSDKPMFHTR

Specific function: Unknown

COG id: COG3615

COG function: function code P; Uncharacterized protein/domain, possibly involved in tellurite resistance

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788098, Length=98, Percent_Identity=45.9183673469388, Blast_Score=94, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015392
- InterPro:   IPR014710
- InterPro:   IPR014510 [H]

Pfam domain/function: PF09313 DUF1971 [H]

EC number: NA

Molecular weight: Translated: 12649; Mature: 12518

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHLRIPKNWTIQRSTAFFTKDNVPAALLSHHNTAEGVFGQLCVMEGVVTYFGFADSEAT
CCCCCCCCCCEEECCEEEEECCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
EPELKVVIEAGQFATSPPQYWHRIELSDDAQFNINFWSESDKSDKPMFHTR
CCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure 
SHLRIPKNWTIQRSTAFFTKDNVPAALLSHHNTAEGVFGQLCVMEGVVTYFGFADSEAT
CCCCCCCCCEEECCEEEEECCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
EPELKVVIEAGQFATSPPQYWHRIELSDDAQFNINFWSESDKSDKPMFHTR
CCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]