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The map label for this gene is xp55 [H]

Identifier: 167625633

GI number: 167625633

Start: 4524955

End: 4526487

Strand: Reverse

Name: xp55 [H]

Synonym: Shal_3728

Alternate gene names: 167625633

Gene position: 4526487-4524955 (Counterclockwise)

Preceding gene: 167625635

Following gene: 167625632

Centisome position: 86.6

GC content: 50.42

Gene sequence:

>1533_bases
GTGAAGTCATTAATTCTATTCATTCTATCTATCTCTTTGCTGCCCTTTGCTAGCTTTGCCAGCACAGACAAGGTATTGAC
CCTTGCCCTAGGCGCCGAGCCAGAAACTGGCTTCGATCCGATTTATGGCTGGGGTAAGTATAACCGTCCGTTATTTCAAT
CTACTCTGATTAAGCGTGACAACGCACTAGAGTTGGTGAGCGATCTTGCGCTGCAATGGCAGCTTAGTGATGACCGCCGG
ATCTGGTCGGTCGATTTACGTCCAGACGTGAAGTTTAGCGATGGTAGCGCGTTAACTGCTGCGGATGTGAAATTTAGCTT
CGATACCGCTAAACAGAGTGCTTCGTTGCATGACTTAACTAATCTAGATCGAGTTGAGATCTTAGATGATTACAGCTTGC
GATTCTATCTGAAGCAGGCTGATATCACCTTTATCGATAACCTAGTGAATCTCGCCATCGTGCCTAAGGCAAGCTATGGC
GCACAGTACGGCCTTAAGCCTATCGGTTCGGGCCCACTAGCCTTTGTGCGCTGGGATCGAAATCAGCAGCTTATTATGCA
GCCCAATCCATACTATTACGGTAAAAAACCAGAGTTTTCTAAGATCATCGTGACCTTTAGCGATGAAGATAGTCGCTATG
CAAGACTGCGTTCTGGCCAGCTAGATCTGGCGGCGATCGCGCCACGTTACGCGAAGATATTACCGCCGGGCTACAAGCTG
TGGAGCATAGATAGCGTCGATAACCGTGGCATTGCATGGCCTATGGTGCCAACTCAGGCCGATGGTATAGGCAATGATGT
CACATCGGATGCAATCATTCGTCAAGCCGTTGGTATGGCCATTGACCGTCAAGTACTAGTACAGCAGCTACTCGATGGCT
TCGCCACGCCTGCCTATTCGATAGCAGATGGTTTACCTTGGGGGCCACAGCTGAACCCGACAATTAAGCCTGACCTCGAG
GCTGCCAAGCAGTTGCTCGAGCAAAATGGTTGGCAGCTTAAAGTAGGACTACGCCATCACGGTGACACTGCGGCTAGCAT
GACGCTCTATTATTTAGCGGGTGATACGGTGCGGCAACAGTTGGCGCTTGCCGTCGCGCAGATGGTTAAGCCATTAGGCA
TAGAGATCAAACCGGTAGGCAAGAGTTGGGAGGCGATCTATCTGCAGATGCATAGTCAGCCTGTGTTGTTAGGTTTTGGT
AGTCACAGCGCGACGGAGGTCAGGGCGGTTTACCATAGTGCAAGTCGCGGCAAAGGCTATTTTAACTCGGGTTACTATAG
CAACCTTCAGGTCGATAAGGCGCTAGACAGTGCACTAGGGGCGGCATCATGGTCAGAGTCATTGCCATACTGGCAGCAGG
CACAAACTTTGATAGCTCACGATCGCCCCTGGACTTGGTTGGTTAATTTACAGCATCTCTACGCGGCCAACGAATGCTTA
GATCTTGCTAAGCCCGGCATAGAGGCTCACGGACATGGTTGGCCGCTGGCCAATAATATTGAGCAGTGGCGTTGGCTATG
TCCTAAGCGATGA

Upstream 100 bases:

>100_bases
TTGCTGTATTTAGTCGTGGGGATAAGCTGTTTTACTAAACAATTGGGTGTAGTGTGACGATTCGAAAAATAGTATTACTC
AGTTGATTATTGGTGTTCTT

Downstream 100 bases:

>100_bases
GAAATCTACCCGCTTCGCTACTCAATACCTGTCTACGGCTAGTACTGCTGTTAATTTTGGTTATCTTACTCGCTTACTTC
TTGCTTAGCTGGTCGCCACT

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 510; Mature: 510

Protein sequence:

>510_residues
MKSLILFILSISLLPFASFASTDKVLTLALGAEPETGFDPIYGWGKYNRPLFQSTLIKRDNALELVSDLALQWQLSDDRR
IWSVDLRPDVKFSDGSALTAADVKFSFDTAKQSASLHDLTNLDRVEILDDYSLRFYLKQADITFIDNLVNLAIVPKASYG
AQYGLKPIGSGPLAFVRWDRNQQLIMQPNPYYYGKKPEFSKIIVTFSDEDSRYARLRSGQLDLAAIAPRYAKILPPGYKL
WSIDSVDNRGIAWPMVPTQADGIGNDVTSDAIIRQAVGMAIDRQVLVQQLLDGFATPAYSIADGLPWGPQLNPTIKPDLE
AAKQLLEQNGWQLKVGLRHHGDTAASMTLYYLAGDTVRQQLALAVAQMVKPLGIEIKPVGKSWEAIYLQMHSQPVLLGFG
SHSATEVRAVYHSASRGKGYFNSGYYSNLQVDKALDSALGAASWSESLPYWQQAQTLIAHDRPWTWLVNLQHLYAANECL
DLAKPGIEAHGHGWPLANNIEQWRWLCPKR

Sequences:

>Translated_510_residues
MKSLILFILSISLLPFASFASTDKVLTLALGAEPETGFDPIYGWGKYNRPLFQSTLIKRDNALELVSDLALQWQLSDDRR
IWSVDLRPDVKFSDGSALTAADVKFSFDTAKQSASLHDLTNLDRVEILDDYSLRFYLKQADITFIDNLVNLAIVPKASYG
AQYGLKPIGSGPLAFVRWDRNQQLIMQPNPYYYGKKPEFSKIIVTFSDEDSRYARLRSGQLDLAAIAPRYAKILPPGYKL
WSIDSVDNRGIAWPMVPTQADGIGNDVTSDAIIRQAVGMAIDRQVLVQQLLDGFATPAYSIADGLPWGPQLNPTIKPDLE
AAKQLLEQNGWQLKVGLRHHGDTAASMTLYYLAGDTVRQQLALAVAQMVKPLGIEIKPVGKSWEAIYLQMHSQPVLLGFG
SHSATEVRAVYHSASRGKGYFNSGYYSNLQVDKALDSALGAASWSESLPYWQQAQTLIAHDRPWTWLVNLQHLYAANECL
DLAKPGIEAHGHGWPLANNIEQWRWLCPKR
>Mature_510_residues
MKSLILFILSISLLPFASFASTDKVLTLALGAEPETGFDPIYGWGKYNRPLFQSTLIKRDNALELVSDLALQWQLSDDRR
IWSVDLRPDVKFSDGSALTAADVKFSFDTAKQSASLHDLTNLDRVEILDDYSLRFYLKQADITFIDNLVNLAIVPKASYG
AQYGLKPIGSGPLAFVRWDRNQQLIMQPNPYYYGKKPEFSKIIVTFSDEDSRYARLRSGQLDLAAIAPRYAKILPPGYKL
WSIDSVDNRGIAWPMVPTQADGIGNDVTSDAIIRQAVGMAIDRQVLVQQLLDGFATPAYSIADGLPWGPQLNPTIKPDLE
AAKQLLEQNGWQLKVGLRHHGDTAASMTLYYLAGDTVRQQLALAVAQMVKPLGIEIKPVGKSWEAIYLQMHSQPVLLGFG
SHSATEVRAVYHSASRGKGYFNSGYYSNLQVDKALDSALGAASWSESLPYWQQAQTLIAHDRPWTWLVNLQHLYAANECL
DLAKPGIEAHGHGWPLANNIEQWRWLCPKR

Specific function: Required for transport of an unidentified substrate [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=511, Percent_Identity=24.0704500978474, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1787052, Length=496, Percent_Identity=25.2016129032258, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789887, Length=342, Percent_Identity=25.7309941520468, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI87081878, Length=425, Percent_Identity=25.1764705882353, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1789966, Length=373, Percent_Identity=22.2520107238606, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 56882; Mature: 56882

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLILFILSISLLPFASFASTDKVLTLALGAEPETGFDPIYGWGKYNRPLFQSTLIKRD
CCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
NALELVSDLALQWQLSDDRRIWSVDLRPDVKFSDGSALTAADVKFSFDTAKQSASLHDLT
CHHHHHHHHEEEEEECCCCEEEEEECCCCCEECCCCEEEEEEEEEEEHHHHHCCCHHHHC
NLDRVEILDDYSLRFYLKQADITFIDNLVNLAIVPKASYGAQYGLKPIGSGPLAFVRWDR
CCCCEEEECCCEEEEEEEECCHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCEEEEEECC
NQQLIMQPNPYYYGKKPEFSKIIVTFSDEDSRYARLRSGQLDLAAIAPRYAKILPPGYKL
CCEEEECCCCCCCCCCCCCEEEEEEECCCCCHHHHHHCCCEEHHHHCCHHHHHCCCCCEE
WSIDSVDNRGIAWPMVPTQADGIGNDVTSDAIIRQAVGMAIDRQVLVQQLLDGFATPAYS
EEECCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
IADGLPWGPQLNPTIKPDLEAAKQLLEQNGWQLKVGLRHHGDTAASMTLYYLAGDTVRQQ
HHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCHHEEEEEEEECHHHHHH
LALAVAQMVKPLGIEIKPVGKSWEAIYLQMHSQPVLLGFGSHSATEVRAVYHSASRGKGY
HHHHHHHHHHHCCCEEEECCCCCEEEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCC
FNSGYYSNLQVDKALDSALGAASWSESLPYWQQAQTLIAHDRPWTWLVNLQHLYAANECL
CCCCCCCCEEHHHHHHHHHCCCCHHHCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHH
DLAKPGIEAHGHGWPLANNIEQWRWLCPKR
HHHCCCCCCCCCCCCCCCCHHHHHHCCCCC
>Mature Secondary Structure
MKSLILFILSISLLPFASFASTDKVLTLALGAEPETGFDPIYGWGKYNRPLFQSTLIKRD
CCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCC
NALELVSDLALQWQLSDDRRIWSVDLRPDVKFSDGSALTAADVKFSFDTAKQSASLHDLT
CHHHHHHHHEEEEEECCCCEEEEEECCCCCEECCCCEEEEEEEEEEEHHHHHCCCHHHHC
NLDRVEILDDYSLRFYLKQADITFIDNLVNLAIVPKASYGAQYGLKPIGSGPLAFVRWDR
CCCCEEEECCCEEEEEEEECCHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCEEEEEECC
NQQLIMQPNPYYYGKKPEFSKIIVTFSDEDSRYARLRSGQLDLAAIAPRYAKILPPGYKL
CCEEEECCCCCCCCCCCCCEEEEEEECCCCCHHHHHHCCCEEHHHHCCHHHHHCCCCCEE
WSIDSVDNRGIAWPMVPTQADGIGNDVTSDAIIRQAVGMAIDRQVLVQQLLDGFATPAYS
EEECCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
IADGLPWGPQLNPTIKPDLEAAKQLLEQNGWQLKVGLRHHGDTAASMTLYYLAGDTVRQQ
HHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCHHEEEEEEEECHHHHHH
LALAVAQMVKPLGIEIKPVGKSWEAIYLQMHSQPVLLGFGSHSATEVRAVYHSASRGKGY
HHHHHHHHHHHCCCEEEECCCCCEEEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCC
FNSGYYSNLQVDKALDSALGAASWSESLPYWQQAQTLIAHDRPWTWLVNLQHLYAANECL
CCCCCCCCEEHHHHHHHHHCCCCHHHCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHH
DLAKPGIEAHGHGWPLANNIEQWRWLCPKR
HHHCCCCCCCCCCCCCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3453116 [H]