| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is btuB [H]
Identifier: 167625416
GI number: 167625416
Start: 4278831
End: 4281665
Strand: Reverse
Name: btuB [H]
Synonym: Shal_3508
Alternate gene names: 167625416
Gene position: 4281665-4278831 (Counterclockwise)
Preceding gene: 167625417
Following gene: 167625414
Centisome position: 81.92
GC content: 43.67
Gene sequence:
>2835_bases ATGACGTCAATAAGCAGTTTATCTAAAGCTGTAAAAGTTGCATTACTAGCAACGACAAGCGCAGCGTTAATGACAAGTGC TGGGGCCTATGCTGAAGAGCAAGAAGGCGATAGCATTGAAAGAATCGAGGTGACAGGCTCGAAAATTAAGCGAATTGGTG AGCTATCTCCAACTCCTATAACCGTCATTACTGGTGCAGATATGATGGATATGGGTATCACTAACGTTGCTGATATCTTG AATAAACTTCCATCATCTACCGTTGGTATCTCTCCAGAGACGTCTAACAACACTATTTTTGCTAACGGTCTAAACCAAAC AGACCTACGTGGCCTAGGTAGCGACCGTACGCTAGTCTTGGTCAATGGCCGTCGTTTTGTTGCGGGCTCTAATGGTAGCT CGGCAGTCGATCTGAACACTATTCCTACAGCGATGGTTTCTCGCATTGAAGTAATCACTGGTGGTGCATCTGCTGTATAT GGCTCCGATGCGATTGCTGGTGTAATTAACATTATCACTCGAACCGATGTTCAAGGTGTTGAGCTTGATGTCTCTTATAT ACAACCAGAACAAAGTGGCGGTGAAGAGGGACAGTTCTCGTTAACTGCGGGTGGTAACTTCTTAGACGATAAACTGTCGA CAGTATTTAACTTTACTTATGCGGAGCAAAAAGAGTTACGTCCAACCGACAGAGACTTTTTAGATAATCCTGTAAACAGT ATTTATAACCCTGATACATCTGAAGGTGCACCAGCTCGTATTGAGTACATTGGTCGTAAGCCACTATCATGGATCAATGA AGCGGGTACCTTCTTTGCTGGTGACGGTGGCCAATATACTTTTGGACCAGATGGTGCAATGAGAGAGTTTGATTACGGTG AAGGACTTATTCCTGGTCCTGGTAACAATGCTAACTACTGTGGTCCAAGCTGTGAAGGTTATGATCCCGTTGATTACGGT TTAATTCGTACACCGCTAGATCGTAAGGTATTTACGCTAAATACTGACTATGAAATTAATGATGAGCACAAGATCTTCAC TGAAATCACCTATGTTGATTATACATCTAACGGTGAAAGCACGCCGGTATTCCATACATGGAATCCTGTCATGGCTGATA ATGCTTTTCTTCCTGAGGAAACAAAGCAGTTAATGGCTGATACAGATATGGAATACTTCAACCTCTACCGTATCGATGGT GAGTTTGGTAACCGTACTTATAACCAAGACCGTGAAACAATGCGTTTCTTAGTGGGCCTTGAAGGCGTGATCAGTGATGA TTGGGATTACTCTATTCACGCTCAACGTGGTCAGCTAAAGGAAACCACGTTATGGAAAGGTCAGATATGGGATGAGCGTT ATGAGCAAGCTAAAGATGCTATCTTAGTTGATGGTGAAATAGTTTGTCGTGATGTCGATGCTCGTGCAGCAGGGTGTGTA CCTATGAACTTACTTGGTGTAAACCAAGCAAGTCAAGAGTCTATCGACTGGGTGGGCACAAGTGCTGGGCAGACAGCTAA GACGACACAGACTAGTGCCGGTCTAATTGTTAGTGGTGCGCTATTTGACCTACCAGCGGGTTACGTCAGTGCGGCATTCA GTGCAGATTACCGTAAGGAAGAGTCTGAAACTAATCCAGATCAAGCACTAATCGACGGTACAATTTTTGGTAACAGTGCT AACCCAATGAAGGGTGAGTATGATGTTACTGAATTTGCAGCTGAATTTAATATTCCATTACTATCAGATATGTTCCTCGC ACATGACTTAGCTCTTGATCTCGCTTATCGCTGGATGGATTACAGCACTGCGGGTCAAGATGATGCTTGGAAAGTGGGTT TAAACTGGGCTCCAATCGAAGATCTTCGTCTTCGTGCAACACGTTCAAAGTCTGTTCGAGCGCCAAATATTGGAGAGTTA TTTAGCCCTGCAGGACAAACATTCGAAAGTTTCACCGACGTTTGTGACAAGATCAACGTGGAGCTAGGTCCAAATGATAA CCGTAAGGCAAATTGTCAGGCTGCTGGTTTACCTCAAGGCTGGAACCCATCTGATTCTTGGTACTTGAGTAATCATGCTG GTAGCAATGCGGGTAACCCAGATCTAAAGGCTGAAACGTCACACGATTACACTATTGGTGCGGTTTATACACCTAATTAT CTTGACGGTTTCTCTATCACAGTAGATTACTGGGCATTTGAGATCTCTGATGCAATTGAATACATCGATGTCAGTACAGC AGTTCGTTATTGCTACGACTCTGAGTCACTAGATAACGTATATTGCAGTCGATTTACCCGTGATGCAGCGACAGGTGATA TTGTCGATTTCGTTCAAAGCCCTGTTAACTCTGCGTCGTTTGACGTTAAAGGTGTCGATATTGAAAGCCAATATGACATT CCAACTGATAGCTTTGGTGACTTTAAAGTTCATGTTATTGCAACTTATCTAGAGCAGTGGCAAACGAACCCGACGGGTTT TGCTGATGACCTACAGGTTGACGTAGGTGAATACACAGACCCACGTTGGAAAGCGATGTTTAGCTTAGGCTGGAAGTATG ATGCACTAAGTCTAGAAGCACGCTCTAACTACCGTCATTCAGCCGTTGCGAGTAACGACTGGAAGCCTGAGAATAACAAC TATAACGATATTCCATCGAGTACTATTTGGGACTTCACGGGTTCATATGCCTTTAATGATGATCTAACTTTACGCTTTGG TGTATTGAATGCATTTGATCTTGCGCCACCACGTAACCCATATGTATACGATGGCGCAGGTTATTACGACACTACGGGTC GTGCATTCTTCCTAGGTGCAAACTATAAGCTTTAA
Upstream 100 bases:
>100_bases ATTTATTGCTTATCTAGGGGTAGCAACCTTAGTTTAAAAATTAGAAAACTCAACAAATTTGAATGAATTGAGTACGCAAT TAACAAAGGGAATGTTGAAT
Downstream 100 bases:
>100_bases TATTAAATAATTAGTCAGTCATATCGTGCTGTAAAAAGCATTGATATTAATAAAAGCCAGTAGCGATTCGTTACTGGTTT TTTTATTTTTATAAGCGGTA
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 944; Mature: 943
Protein sequence:
>944_residues MTSISSLSKAVKVALLATTSAALMTSAGAYAEEQEGDSIERIEVTGSKIKRIGELSPTPITVITGADMMDMGITNVADIL NKLPSSTVGISPETSNNTIFANGLNQTDLRGLGSDRTLVLVNGRRFVAGSNGSSAVDLNTIPTAMVSRIEVITGGASAVY GSDAIAGVINIITRTDVQGVELDVSYIQPEQSGGEEGQFSLTAGGNFLDDKLSTVFNFTYAEQKELRPTDRDFLDNPVNS IYNPDTSEGAPARIEYIGRKPLSWINEAGTFFAGDGGQYTFGPDGAMREFDYGEGLIPGPGNNANYCGPSCEGYDPVDYG LIRTPLDRKVFTLNTDYEINDEHKIFTEITYVDYTSNGESTPVFHTWNPVMADNAFLPEETKQLMADTDMEYFNLYRIDG EFGNRTYNQDRETMRFLVGLEGVISDDWDYSIHAQRGQLKETTLWKGQIWDERYEQAKDAILVDGEIVCRDVDARAAGCV PMNLLGVNQASQESIDWVGTSAGQTAKTTQTSAGLIVSGALFDLPAGYVSAAFSADYRKEESETNPDQALIDGTIFGNSA NPMKGEYDVTEFAAEFNIPLLSDMFLAHDLALDLAYRWMDYSTAGQDDAWKVGLNWAPIEDLRLRATRSKSVRAPNIGEL FSPAGQTFESFTDVCDKINVELGPNDNRKANCQAAGLPQGWNPSDSWYLSNHAGSNAGNPDLKAETSHDYTIGAVYTPNY LDGFSITVDYWAFEISDAIEYIDVSTAVRYCYDSESLDNVYCSRFTRDAATGDIVDFVQSPVNSASFDVKGVDIESQYDI PTDSFGDFKVHVIATYLEQWQTNPTGFADDLQVDVGEYTDPRWKAMFSLGWKYDALSLEARSNYRHSAVASNDWKPENNN YNDIPSSTIWDFTGSYAFNDDLTLRFGVLNAFDLAPPRNPYVYDGAGYYDTTGRAFFLGANYKL
Sequences:
>Translated_944_residues MTSISSLSKAVKVALLATTSAALMTSAGAYAEEQEGDSIERIEVTGSKIKRIGELSPTPITVITGADMMDMGITNVADIL NKLPSSTVGISPETSNNTIFANGLNQTDLRGLGSDRTLVLVNGRRFVAGSNGSSAVDLNTIPTAMVSRIEVITGGASAVY GSDAIAGVINIITRTDVQGVELDVSYIQPEQSGGEEGQFSLTAGGNFLDDKLSTVFNFTYAEQKELRPTDRDFLDNPVNS IYNPDTSEGAPARIEYIGRKPLSWINEAGTFFAGDGGQYTFGPDGAMREFDYGEGLIPGPGNNANYCGPSCEGYDPVDYG LIRTPLDRKVFTLNTDYEINDEHKIFTEITYVDYTSNGESTPVFHTWNPVMADNAFLPEETKQLMADTDMEYFNLYRIDG EFGNRTYNQDRETMRFLVGLEGVISDDWDYSIHAQRGQLKETTLWKGQIWDERYEQAKDAILVDGEIVCRDVDARAAGCV PMNLLGVNQASQESIDWVGTSAGQTAKTTQTSAGLIVSGALFDLPAGYVSAAFSADYRKEESETNPDQALIDGTIFGNSA NPMKGEYDVTEFAAEFNIPLLSDMFLAHDLALDLAYRWMDYSTAGQDDAWKVGLNWAPIEDLRLRATRSKSVRAPNIGEL FSPAGQTFESFTDVCDKINVELGPNDNRKANCQAAGLPQGWNPSDSWYLSNHAGSNAGNPDLKAETSHDYTIGAVYTPNY LDGFSITVDYWAFEISDAIEYIDVSTAVRYCYDSESLDNVYCSRFTRDAATGDIVDFVQSPVNSASFDVKGVDIESQYDI PTDSFGDFKVHVIATYLEQWQTNPTGFADDLQVDVGEYTDPRWKAMFSLGWKYDALSLEARSNYRHSAVASNDWKPENNN YNDIPSSTIWDFTGSYAFNDDLTLRFGVLNAFDLAPPRNPYVYDGAGYYDTTGRAFFLGANYKL >Mature_943_residues TSISSLSKAVKVALLATTSAALMTSAGAYAEEQEGDSIERIEVTGSKIKRIGELSPTPITVITGADMMDMGITNVADILN KLPSSTVGISPETSNNTIFANGLNQTDLRGLGSDRTLVLVNGRRFVAGSNGSSAVDLNTIPTAMVSRIEVITGGASAVYG SDAIAGVINIITRTDVQGVELDVSYIQPEQSGGEEGQFSLTAGGNFLDDKLSTVFNFTYAEQKELRPTDRDFLDNPVNSI YNPDTSEGAPARIEYIGRKPLSWINEAGTFFAGDGGQYTFGPDGAMREFDYGEGLIPGPGNNANYCGPSCEGYDPVDYGL IRTPLDRKVFTLNTDYEINDEHKIFTEITYVDYTSNGESTPVFHTWNPVMADNAFLPEETKQLMADTDMEYFNLYRIDGE FGNRTYNQDRETMRFLVGLEGVISDDWDYSIHAQRGQLKETTLWKGQIWDERYEQAKDAILVDGEIVCRDVDARAAGCVP MNLLGVNQASQESIDWVGTSAGQTAKTTQTSAGLIVSGALFDLPAGYVSAAFSADYRKEESETNPDQALIDGTIFGNSAN PMKGEYDVTEFAAEFNIPLLSDMFLAHDLALDLAYRWMDYSTAGQDDAWKVGLNWAPIEDLRLRATRSKSVRAPNIGELF SPAGQTFESFTDVCDKINVELGPNDNRKANCQAAGLPQGWNPSDSWYLSNHAGSNAGNPDLKAETSHDYTIGAVYTPNYL DGFSITVDYWAFEISDAIEYIDVSTAVRYCYDSESLDNVYCSRFTRDAATGDIVDFVQSPVNSASFDVKGVDIESQYDIP TDSFGDFKVHVIATYLEQWQTNPTGFADDLQVDVGEYTDPRWKAMFSLGWKYDALSLEARSNYRHSAVASNDWKPENNNY NDIPSSTIWDFTGSYAFNDDLTLRFGVLNAFDLAPPRNPYVYDGAGYYDTTGRAFFLGANYKL
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=177, Percent_Identity=35.5932203389831, Blast_Score=85, Evalue=2e-17, Organism=Escherichia coli, GI1788478, Length=255, Percent_Identity=30.9803921568627, Blast_Score=81, Evalue=3e-16,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010101 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 103690; Mature: 103559
Theoretical pI: Translated: 4.06; Mature: 4.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSISSLSKAVKVALLATTSAALMTSAGAYAEEQEGDSIERIEVTGSKIKRIGELSPTPI CCCHHHHHHHHEEEEEEECHHHHHHCCCCCCHHCCCCCEEEEEECCHHHHHHCCCCCCCE TVITGADMMDMGITNVADILNKLPSSTVGISPETSNNTIFANGLNQTDLRGLGSDRTLVL EEEECCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCHHHHCCCCCCEEEE VNGRRFVAGSNGSSAVDLNTIPTAMVSRIEVITGGASAVYGSDAIAGVINIITRTDVQGV ECCEEEEECCCCCCEEECCCCCHHHHHEEEEEECCCCEECCCHHHHHHHHHHHCCCCCCE ELDVSYIQPEQSGGEEGQFSLTAGGNFLDDKLSTVFNFTYAEQKELRPTDRDFLDNPVNS EEEEEEECCCCCCCCCCEEEEEECCCCHHHHHHHHHEEEECCHHHCCCCCHHHHCCCHHH IYNPDTSEGAPARIEYIGRKPLSWINEAGTFFAGDGGQYTFGPDGAMREFDYGEGLIPGP HCCCCCCCCCCCEEEEECCCCHHHHHCCCCEEECCCCEEEECCCCCCCCCCCCCCCCCCC GNNANYCGPSCEGYDPVDYGLIRTPLDRKVFTLNTDYEINDEHKIFTEITYVDYTSNGES CCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCEEECCCCEEEEEEEEEEECCCCCC TPVFHTWNPVMADNAFLPEETKQLMADTDMEYFNLYRIDGEFGNRTYNQDRETMRFLVGL CCEEECCCCHHCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHC EGVISDDWDYSIHAQRGQLKETTLWKGQIWDERYEQAKDAILVDGEIVCRDVDARAAGCV CCEECCCCCEEEECCCCCCCCCEEECCCHHHHHHHHHCCEEEECCEEEEEECCCCCCCCC PMNLLGVNQASQESIDWVGTSAGQTAKTTQTSAGLIVSGALFDLPAGYVSAAFSADYRKE EEEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCEEEECHHHHCCCHHHHHHHHHHHHHC ESETNPDQALIDGTIFGNSANPMKGEYDVTEFAAEFNIPLLSDMFLAHDLALDLAYRWMD CCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC YSTAGQDDAWKVGLNWAPIEDLRLRATRSKSVRAPNIGELFSPAGQTFESFTDVCDKINV CCCCCCCCCEEECCCCCCHHHHHEEECCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHEEE ELGPNDNRKANCQAAGLPQGWNPSDSWYLSNHAGSNAGNPDLKAETSHDYTIGAVYTPNY EECCCCCCCCCCEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCC LDGFSITVDYWAFEISDAIEYIDVSTAVRYCYDSESLDNVYCSRFTRDAATGDIVDFVQS CCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHC PVNSASFDVKGVDIESQYDIPTDSFGDFKVHVIATYLEQWQTNPTGFADDLQVDVGEYTD CCCCCCCEEEECCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCCCEEEECCCCCC PRWKAMFSLGWKYDALSLEARSNYRHSAVASNDWKPENNNYNDIPSSTIWDFTGSYAFND HHHHHHHHCCCEECEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECC DLTLRFGVLNAFDLAPPRNPYVYDGAGYYDTTGRAFFLGANYKL CCEEEEECEEHEECCCCCCCEEECCCCEECCCCCEEEEECCCCC >Mature Secondary Structure TSISSLSKAVKVALLATTSAALMTSAGAYAEEQEGDSIERIEVTGSKIKRIGELSPTPI CCHHHHHHHHEEEEEEECHHHHHHCCCCCCHHCCCCCEEEEEECCHHHHHHCCCCCCCE TVITGADMMDMGITNVADILNKLPSSTVGISPETSNNTIFANGLNQTDLRGLGSDRTLVL EEEECCCHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCHHHHCCCCCCEEEE VNGRRFVAGSNGSSAVDLNTIPTAMVSRIEVITGGASAVYGSDAIAGVINIITRTDVQGV ECCEEEEECCCCCCEEECCCCCHHHHHEEEEEECCCCEECCCHHHHHHHHHHHCCCCCCE ELDVSYIQPEQSGGEEGQFSLTAGGNFLDDKLSTVFNFTYAEQKELRPTDRDFLDNPVNS EEEEEEECCCCCCCCCCEEEEEECCCCHHHHHHHHHEEEECCHHHCCCCCHHHHCCCHHH IYNPDTSEGAPARIEYIGRKPLSWINEAGTFFAGDGGQYTFGPDGAMREFDYGEGLIPGP HCCCCCCCCCCCEEEEECCCCHHHHHCCCCEEECCCCEEEECCCCCCCCCCCCCCCCCCC GNNANYCGPSCEGYDPVDYGLIRTPLDRKVFTLNTDYEINDEHKIFTEITYVDYTSNGES CCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCEEECCCCEEEEEEEEEEECCCCCC TPVFHTWNPVMADNAFLPEETKQLMADTDMEYFNLYRIDGEFGNRTYNQDRETMRFLVGL CCEEECCCCHHCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHC EGVISDDWDYSIHAQRGQLKETTLWKGQIWDERYEQAKDAILVDGEIVCRDVDARAAGCV CCEECCCCCEEEECCCCCCCCCEEECCCHHHHHHHHHCCEEEECCEEEEEECCCCCCCCC PMNLLGVNQASQESIDWVGTSAGQTAKTTQTSAGLIVSGALFDLPAGYVSAAFSADYRKE EEEEECCCCCCCCCCCEEECCCCCCCCCCCCCCCEEEECHHHHCCCHHHHHHHHHHHHHC ESETNPDQALIDGTIFGNSANPMKGEYDVTEFAAEFNIPLLSDMFLAHDLALDLAYRWMD CCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC YSTAGQDDAWKVGLNWAPIEDLRLRATRSKSVRAPNIGELFSPAGQTFESFTDVCDKINV CCCCCCCCCEEECCCCCCHHHHHEEECCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHEEE ELGPNDNRKANCQAAGLPQGWNPSDSWYLSNHAGSNAGNPDLKAETSHDYTIGAVYTPNY EECCCCCCCCCCEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCC LDGFSITVDYWAFEISDAIEYIDVSTAVRYCYDSESLDNVYCSRFTRDAATGDIVDFVQS CCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHC PVNSASFDVKGVDIESQYDIPTDSFGDFKVHVIATYLEQWQTNPTGFADDLQVDVGEYTD CCCCCCCEEEECCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCCCEEEECCCCCC PRWKAMFSLGWKYDALSLEARSNYRHSAVASNDWKPENNNYNDIPSSTIWDFTGSYAFND HHHHHHHHCCCEECEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECC DLTLRFGVLNAFDLAPPRNPYVYDGAGYYDTTGRAFFLGANYKL CCEEEEECEEHEECCCCCCCEEECCCCEECCCCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA