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The map label for this gene is yiaV [H]

Identifier: 167625414

GI number: 167625414

Start: 4276606

End: 4277673

Strand: Reverse

Name: yiaV [H]

Synonym: Shal_3506

Alternate gene names: 167625414

Gene position: 4277673-4276606 (Counterclockwise)

Preceding gene: 167625416

Following gene: 167625413

Centisome position: 81.84

GC content: 49.44

Gene sequence:

>1068_bases
ATGCAAACCGCAGAACATGCTTTTCGTCGCTGGATGCAAAGCTTGATTATTATTTTCATCTTCCTTATTGGTTATATCGT
GATCGCCGATCGCTATGTACCGTTAACGACTGAGAGTCGAGTCCAAGGTTACGTGATCCAAATCGCCCCGGAAGTAACCG
GAACTGTCACTGCGGTTGAAGTGCATAATAATCAGCAACTGAAACGGGGTGATAAGCTATTTAGCATCGATGCGCGTAAG
TATCAGCTTGCGATGGAGAAAGCTCAGCTGGCGCTAGAGCAGGCACATGAGCAAGAAGATGCTATGTACGCCAAGGTGGA
GGCGGCAGAAGCAAATGTCGCCACTAATCAAGCCGCTTTCGATAATGCCAGTAGTGAGTATCGACGGATCAGTCAGTTGG
CAAAGCAAAAGCTAGTCTCGGTCTCTATGTTAGATAGTGCTCTGGCAAACAATAATGCATCAGGGGCTAACCTACGTGCT
GCTCAGCAGGATCTACGGGCATTAACCGTGCAGCTCGGCAGTCAACCAGGGCAGAGCAGTGTTGTGCGCGCAGCCAAGAA
TAGTTTGCAGCAAGCAGAGCTGGATCTTTCCCACACTCAAGTGTTTGCACCAAGTGATGGGGTCGTGACAAATCTGCAGT
TGGAGGTAGGCAGTACAGCCAATAGTCATATGCCGCTACTGACCTTTATTCCAACCGATTCCCTCTGGATTGCAGCTGAT
TTTCGTGAAAAAGCGGTGGCTCGGATAGACAAGCAGTCAAAGGCGCTAGTGGCATTCGATGCCTTTCCGGGAAAGGTATT
CTCACTTGATGTGCAAAGCCGGGACTTTGGTGTGGCGGCGGCGCAGCAAAGTCCAAATGGACAACTGACCCATGTTGAGA
CCAACAACCGCTGGGTACGAGATGCCCAGCGAGTCCGAATTAATTTAACCAGTCAAAGTACTCTACCTCAGCCGCTATTT
GTCGGTTCTCGTGCCACGGTGGTGATCTATCCAGAAGATAATAGCGGGTGGGCTTTGCTTGCTAGGAGTCAGATTAAGTT
GGTGAGTTGGCTTCACTATATCTACTAA

Upstream 100 bases:

>100_bases
TGTCCTACCTATAGGTTGTAAGTGCGCTATCTGCCATTCTATTTAATCTAATTAGCAATATCTATAATACTTGTCCCTCA
GATTGACCTTGGACCTATTC

Downstream 100 bases:

>100_bases
TTTTTCTGTTATTTTATCAACGATAGCCTACTAGGAAGCCTTATTGTGCAAATTAAGACTTTGAGAAAAACCCAACGGAT
CTGGTTTGGCTGTGTGTTTG

Product: secretion protein HlyD family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 355; Mature: 355

Protein sequence:

>355_residues
MQTAEHAFRRWMQSLIIIFIFLIGYIVIADRYVPLTTESRVQGYVIQIAPEVTGTVTAVEVHNNQQLKRGDKLFSIDARK
YQLAMEKAQLALEQAHEQEDAMYAKVEAAEANVATNQAAFDNASSEYRRISQLAKQKLVSVSMLDSALANNNASGANLRA
AQQDLRALTVQLGSQPGQSSVVRAAKNSLQQAELDLSHTQVFAPSDGVVTNLQLEVGSTANSHMPLLTFIPTDSLWIAAD
FREKAVARIDKQSKALVAFDAFPGKVFSLDVQSRDFGVAAAQQSPNGQLTHVETNNRWVRDAQRVRINLTSQSTLPQPLF
VGSRATVVIYPEDNSGWALLARSQIKLVSWLHYIY

Sequences:

>Translated_355_residues
MQTAEHAFRRWMQSLIIIFIFLIGYIVIADRYVPLTTESRVQGYVIQIAPEVTGTVTAVEVHNNQQLKRGDKLFSIDARK
YQLAMEKAQLALEQAHEQEDAMYAKVEAAEANVATNQAAFDNASSEYRRISQLAKQKLVSVSMLDSALANNNASGANLRA
AQQDLRALTVQLGSQPGQSSVVRAAKNSLQQAELDLSHTQVFAPSDGVVTNLQLEVGSTANSHMPLLTFIPTDSLWIAAD
FREKAVARIDKQSKALVAFDAFPGKVFSLDVQSRDFGVAAAQQSPNGQLTHVETNNRWVRDAQRVRINLTSQSTLPQPLF
VGSRATVVIYPEDNSGWALLARSQIKLVSWLHYIY
>Mature_355_residues
MQTAEHAFRRWMQSLIIIFIFLIGYIVIADRYVPLTTESRVQGYVIQIAPEVTGTVTAVEVHNNQQLKRGDKLFSIDARK
YQLAMEKAQLALEQAHEQEDAMYAKVEAAEANVATNQAAFDNASSEYRRISQLAKQKLVSVSMLDSALANNNASGANLRA
AQQDLRALTVQLGSQPGQSSVVRAAKNSLQQAELDLSHTQVFAPSDGVVTNLQLEVGSTANSHMPLLTFIPTDSLWIAAD
FREKAVARIDKQSKALVAFDAFPGKVFSLDVQSRDFGVAAAQQSPNGQLTHVETNNRWVRDAQRVRINLTSQSTLPQPLF
VGSRATVVIYPEDNSGWALLARSQIKLVSWLHYIY

Specific function: Unknown

COG id: COG1566

COG function: function code V; Multidrug resistance efflux pump

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI1790012, Length=345, Percent_Identity=28.695652173913, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1790519, Length=319, Percent_Identity=29.153605015674, Blast_Score=108, Evalue=8e-25,
Organism=Escherichia coli, GI1790024, Length=342, Percent_Identity=27.1929824561404, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI1789041, Length=339, Percent_Identity=26.8436578171091, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1789637, Length=330, Percent_Identity=27.8787878787879, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1788711, Length=344, Percent_Identity=25, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI87081951, Length=304, Percent_Identity=24.3421052631579, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 39242; Mature: 39242

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTAEHAFRRWMQSLIIIFIFLIGYIVIADRYVPLTTESRVQGYVIQIAPEVTGTVTAVE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCEEEEEEECCCCCEEEEEE
VHNNQQLKRGDKLFSIDARKYQLAMEKAQLALEQAHEQEDAMYAKVEAAEANVATNQAAF
ECCCCHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCHHC
DNASSEYRRISQLAKQKLVSVSMLDSALANNNASGANLRAAQQDLRALTVQLGSQPGQSS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHH
VVRAAKNSLQQAELDLSHTQVFAPSDGVVTNLQLEVGSTANSHMPLLTFIPTDSLWIAAD
HHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEEEECCCCCCCCCEEEEECCCCEEEEEC
FREKAVARIDKQSKALVAFDAFPGKVFSLDVQSRDFGVAAAQQSPNGQLTHVETNNRWVR
HHHHHHHHHCCCCCEEEEEECCCCEEEEEEECCCCCCEEECCCCCCCCEEEEECCCCCCC
DAQRVRINLTSQSTLPQPLFVGSRATVVIYPEDNSGWALLARSQIKLVSWLHYIY
CCEEEEEEEECCCCCCCCEEECCCEEEEEEECCCCCEEEEEHHHHHHHHHHHHHC
>Mature Secondary Structure
MQTAEHAFRRWMQSLIIIFIFLIGYIVIADRYVPLTTESRVQGYVIQIAPEVTGTVTAVE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCEEEEEEECCCCCEEEEEE
VHNNQQLKRGDKLFSIDARKYQLAMEKAQLALEQAHEQEDAMYAKVEAAEANVATNQAAF
ECCCCHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCHHC
DNASSEYRRISQLAKQKLVSVSMLDSALANNNASGANLRAAQQDLRALTVQLGSQPGQSS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHH
VVRAAKNSLQQAELDLSHTQVFAPSDGVVTNLQLEVGSTANSHMPLLTFIPTDSLWIAAD
HHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEEEECCCCCCCCCEEEEECCCCEEEEEC
FREKAVARIDKQSKALVAFDAFPGKVFSLDVQSRDFGVAAAQQSPNGQLTHVETNNRWVR
HHHHHHHHHCCCCCEEEEEECCCCEEEEEEECCCCCCEEECCCCCCCCEEEEECCCCCCC
DAQRVRINLTSQSTLPQPLFVGSRATVVIYPEDNSGWALLARSQIKLVSWLHYIY
CCEEEEEEEECCCCCCCCEEECCCEEEEEEECCCCCEEEEEHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]