| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167625256
Identifier: 167625256
GI number: 167625256
Start: 4085855
End: 4086103
Strand: Reverse
Name: 167625256
Synonym: Shal_3345
Alternate gene names: NA
Gene position: 4086103-4085855 (Counterclockwise)
Preceding gene: 167625258
Following gene: 167625255
Centisome position: 78.17
GC content: 42.57
Gene sequence:
>249_bases ATGACCGACACTACATCACAACCAGCTTTACCGGATCGTCTTTCTGTTAACCCACGTAGCCCACATCATGTGGAAGCTAT TTTCGAGTTTGATATCGGTATCAAGGTTAACGGCAAAGAACGTTTTGATGTTGAAGAATATTGCATCAGCGAAGGCTGGG TAAAAGTGCCTTCACACAAAGCATTAGACCGTCGTGGTCAACCGCTTATGGTAACTGTAAAAGGCGAAGTTGAAGCTTTT TATAAATAG
Upstream 100 bases:
>100_bases TCCACTAACATTTATTGCAGCCGCTATTGAGCACGAGCCCTGTATTGCCTACAATAGCGCACTTTTTATTTACTCCGATT TTTTACTACAGGCCACGATT
Downstream 100 bases:
>100_bases ACGCAGTTAACTGCCTATCTTATTGAGCCTTGTCTGTAGTTATTTCATTGATTTAATGATGATTTAAATGGCAAGGCTTT TTCTCATCCTTTTGGCTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 82; Mature: 81
Protein sequence:
>82_residues MTDTTSQPALPDRLSVNPRSPHHVEAIFEFDIGIKVNGKERFDVEEYCISEGWVKVPSHKALDRRGQPLMVTVKGEVEAF YK
Sequences:
>Translated_82_residues MTDTTSQPALPDRLSVNPRSPHHVEAIFEFDIGIKVNGKERFDVEEYCISEGWVKVPSHKALDRRGQPLMVTVKGEVEAF YK >Mature_81_residues TDTTSQPALPDRLSVNPRSPHHVEAIFEFDIGIKVNGKERFDVEEYCISEGWVKVPSHKALDRRGQPLMVTVKGEVEAFY K
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 9329; Mature: 9197
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDTTSQPALPDRLSVNPRSPHHVEAIFEFDIGIKVNGKERFDVEEYCISEGWVKVPSHK CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCEEECCCCCCCHHHHHHCCCEEECCCCC ALDRRGQPLMVTVKGEVEAFYK CHHCCCCEEEEEEECCEEEECC >Mature Secondary Structure TDTTSQPALPDRLSVNPRSPHHVEAIFEFDIGIKVNGKERFDVEEYCISEGWVKVPSHK CCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCEEECCCCCCCHHHHHHCCCEEECCCCC ALDRRGQPLMVTVKGEVEAFYK CHHCCCCEEEEEEECCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA