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The map label for this gene is ygcU [H]

Identifier: 167625241

GI number: 167625241

Start: 4066986

End: 4068629

Strand: Reverse

Name: ygcU [H]

Synonym: Shal_3330

Alternate gene names: 167625241

Gene position: 4068629-4066986 (Counterclockwise)

Preceding gene: 167625243

Following gene: 167625240

Centisome position: 77.84

GC content: 52.98

Gene sequence:

>1644_bases
ATGGGTAGAGCAGCGCTGGATAATCGAAAATGGAATGGCTGGGGCGACAAAGATAGGAGCTTGGCGCTGTCTGATGATGG
TGCCACTTTTATCACTGAAACGCTTGGTGAGGCGCAGCCGCTACCTATAGCGACACTCGAAGAGGTCTTGGCCAAGGTGC
CTGCCTCCCGTTTAGATGAGAGCGAGCTGTATACCACCGACGCTGAAGTGCGGCTGCGTCATGCCCGCGGTCAGAGTCTA
CCGGACTGGTTGGCGATGAAGAGCGGCGAGTTTAACCTGTTTCCCGATGCCGTCGCCTTTCCCCGTAGTAGTGAGGAGAT
CCGCGCCTTGATGGACGCGGCAAAATACAATGACTGGCAGTTGATCCCCTATGGCGGTGGTACCTCTGTGGTGGGGCATA
TCACCCCTTGTGAGACAGACAAGCCGGTACTGACTATCTCCATGAACAAGATGAACCGACTGCTCGCGCTCGACAGAGTC
TCGCAACTTGCCACCTTTGGTGCCGGCGTTAAGGGGCCATTTTTGGAGTCTCAGCTGCAGGCTCAAGGTTACACATTAGG
CCACTTTCCGCAGTCTTTCGAGCTATCGACATTAGGCGGCTGGGTGGTAACCCGCTCAAGCGGTCAGCAATCGTTACATT
ATGGCCGTATTGAAAACCTGTTTGCCGGCGGTGAGATTGAGACCTTCGAGGGCAAGGTGGATATTCCGACCTTGCCTGCG
TCATCTGCGGGGCCGGATTGGCGTCACCTGGTGTTGGGCTCAGAGGGCCATTTAGGCATTTTAACCGAAGCCAAAGTTCG
GGTGAGCCGCGTGCCCGAGCAGGAGTTCTTTGGGGTGGCCTTTATGCCGAGTTGGCAACAGGGGATTGCCTGTGCTCGAG
AGGTTATTCAGCAGGGGCTGTCTCTTTCAATGCTTAGGCTAAGCAATAGTATCGAGACCAAGACGCAGCTTTTTCTGTCG
GCTAATCAGCCCCAGCGTCACTGGCTTGCCAAGTTACTGTCTCTAAAAGGCGTGGGTGATGACAAATGCATGCTGATCTA
TGGCATTACAGGTGACAAGAGCGATAACAACCAGAGCTACAAGCGCTTGAAGCGCATTATCAACCAGTTCAAAGGGGTTA
ACACTGGCCAGAGTCTCGGTAAAAAATGGGCGCATAAGCGCTTCGCCTTCCCCTATTTACGAGAAACATTGTGGCAGATG
GGCTATGCCATCGACACGCTAGAGACGGCGACCAACTGGTCCAATATTGAGCCGCTGACCGATAAGATTGAGCAGAGCCT
AAAAGGGGGACTCGAGGAATTGGGCACTCGGGTGCATGTATTTTCTCACCTGTCGCATCTCTATAGCGACGGTGCCAGCA
TCTATACCACTTACCTGTTTCCTGTGGCGAAAACCTATGAGCAGACCTATCAGCAATGGCAAAAACTCAAATCGACCACC
TCTAAGCTGATTGTTGAGAGTCACGGCACCATCAGTCATCAACATGGCGTGGGCGGCGATCATGCCGCTTATCTTGCAAC
AGAAAAAGGCGGGCGAGTGGTTGAGTCACTGCAGGATTATTTTAACGGCTTCGATCCTAAGGGGCAGTTAAATCCCGGCA
AGCTGTTTAAGGCTATTAATAACCAAGATAAGGCGCAGCCATGA

Upstream 100 bases:

>100_bases
CATCGTTTAACCAATTTATGAATATTGTCCATATTTGTCACTGATAATATGTTGCAACATTGTAATATAAATCTATCTGT
ATGCAAATCGGTCAAATATT

Downstream 100 bases:

>100_bases
ATACCTTGAGTCAGGCAGCGAAAGCAGCAACTGATGCTATTACTCAGGTGGAGGAGGCTGAGTATGATCTTATCATCATT
GGGGGGGGGATCACTGGGGC

Product: alkylglycerone-phosphate synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 547; Mature: 546

Protein sequence:

>547_residues
MGRAALDNRKWNGWGDKDRSLALSDDGATFITETLGEAQPLPIATLEEVLAKVPASRLDESELYTTDAEVRLRHARGQSL
PDWLAMKSGEFNLFPDAVAFPRSSEEIRALMDAAKYNDWQLIPYGGGTSVVGHITPCETDKPVLTISMNKMNRLLALDRV
SQLATFGAGVKGPFLESQLQAQGYTLGHFPQSFELSTLGGWVVTRSSGQQSLHYGRIENLFAGGEIETFEGKVDIPTLPA
SSAGPDWRHLVLGSEGHLGILTEAKVRVSRVPEQEFFGVAFMPSWQQGIACAREVIQQGLSLSMLRLSNSIETKTQLFLS
ANQPQRHWLAKLLSLKGVGDDKCMLIYGITGDKSDNNQSYKRLKRIINQFKGVNTGQSLGKKWAHKRFAFPYLRETLWQM
GYAIDTLETATNWSNIEPLTDKIEQSLKGGLEELGTRVHVFSHLSHLYSDGASIYTTYLFPVAKTYEQTYQQWQKLKSTT
SKLIVESHGTISHQHGVGGDHAAYLATEKGGRVVESLQDYFNGFDPKGQLNPGKLFKAINNQDKAQP

Sequences:

>Translated_547_residues
MGRAALDNRKWNGWGDKDRSLALSDDGATFITETLGEAQPLPIATLEEVLAKVPASRLDESELYTTDAEVRLRHARGQSL
PDWLAMKSGEFNLFPDAVAFPRSSEEIRALMDAAKYNDWQLIPYGGGTSVVGHITPCETDKPVLTISMNKMNRLLALDRV
SQLATFGAGVKGPFLESQLQAQGYTLGHFPQSFELSTLGGWVVTRSSGQQSLHYGRIENLFAGGEIETFEGKVDIPTLPA
SSAGPDWRHLVLGSEGHLGILTEAKVRVSRVPEQEFFGVAFMPSWQQGIACAREVIQQGLSLSMLRLSNSIETKTQLFLS
ANQPQRHWLAKLLSLKGVGDDKCMLIYGITGDKSDNNQSYKRLKRIINQFKGVNTGQSLGKKWAHKRFAFPYLRETLWQM
GYAIDTLETATNWSNIEPLTDKIEQSLKGGLEELGTRVHVFSHLSHLYSDGASIYTTYLFPVAKTYEQTYQQWQKLKSTT
SKLIVESHGTISHQHGVGGDHAAYLATEKGGRVVESLQDYFNGFDPKGQLNPGKLFKAINNQDKAQP
>Mature_546_residues
GRAALDNRKWNGWGDKDRSLALSDDGATFITETLGEAQPLPIATLEEVLAKVPASRLDESELYTTDAEVRLRHARGQSLP
DWLAMKSGEFNLFPDAVAFPRSSEEIRALMDAAKYNDWQLIPYGGGTSVVGHITPCETDKPVLTISMNKMNRLLALDRVS
QLATFGAGVKGPFLESQLQAQGYTLGHFPQSFELSTLGGWVVTRSSGQQSLHYGRIENLFAGGEIETFEGKVDIPTLPAS
SAGPDWRHLVLGSEGHLGILTEAKVRVSRVPEQEFFGVAFMPSWQQGIACAREVIQQGLSLSMLRLSNSIETKTQLFLSA
NQPQRHWLAKLLSLKGVGDDKCMLIYGITGDKSDNNQSYKRLKRIINQFKGVNTGQSLGKKWAHKRFAFPYLRETLWQMG
YAIDTLETATNWSNIEPLTDKIEQSLKGGLEELGTRVHVFSHLSHLYSDGASIYTTYLFPVAKTYEQTYQQWQKLKSTTS
KLIVESHGTISHQHGVGGDHAAYLATEKGGRVVESLQDYFNGFDPKGQLNPGKLFKAINNQDKAQP

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI4501993, Length=573, Percent_Identity=27.9232111692845, Blast_Score=216, Evalue=4e-56,
Organism=Escherichia coli, GI48994907, Length=456, Percent_Identity=26.3157894736842, Blast_Score=143, Evalue=3e-35,
Organism=Caenorhabditis elegans, GI17556096, Length=576, Percent_Identity=28.2986111111111, Blast_Score=235, Evalue=4e-62,
Organism=Caenorhabditis elegans, GI17534361, Length=469, Percent_Identity=23.454157782516, Blast_Score=67, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6320027, Length=457, Percent_Identity=24.72647702407, Blast_Score=112, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6320764, Length=240, Percent_Identity=24.1666666666667, Blast_Score=69, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6320023, Length=247, Percent_Identity=25.1012145748988, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24653753, Length=489, Percent_Identity=28.8343558282209, Blast_Score=213, Evalue=2e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 60654; Mature: 60523

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRAALDNRKWNGWGDKDRSLALSDDGATFITETLGEAQPLPIATLEEVLAKVPASRLDE
CCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCHHHCCC
SELYTTDAEVRLRHARGQSLPDWLAMKSGEFNLFPDAVAFPRSSEEIRALMDAAKYNDWQ
CCEEECCHHHHEEHHCCCCCCHHHHHCCCCCCCCCCHHCCCCCHHHHHHHHHHHCCCCEE
LIPYGGGTSVVGHITPCETDKPVLTISMNKMNRLLALDRVSQLATFGAGVKGPFLESQLQ
EEEECCCCCEEEECCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
AQGYTLGHFPQSFELSTLGGWVVTRSSGQQSLHYGRIENLFAGGEIETFEGKVDIPTLPA
HCCCEECCCCCCCEEEECCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCEECCCCCCC
SSAGPDWRHLVLGSEGHLGILTEAKVRVSRVPEQEFFGVAFMPSWQQGIACAREVIQQGL
CCCCCCCEEEEECCCCCEEEEEHHHHHHHHCCHHHHCCEEECCCHHHHHHHHHHHHHCCC
SLSMLRLSNSIETKTQLFLSANQPQRHWLAKLLSLKGVGDDKCMLIYGITGDKSDNNQSY
CEEHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHH
KRLKRIINQFKGVNTGQSLGKKWAHKRFAFPYLRETLWQMGYAIDTLETATNWSNIEPLT
HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCHHH
DKIEQSLKGGLEELGTRVHVFSHLSHLYSDGASIYTTYLFPVAKTYEQTYQQWQKLKSTT
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHH
SKLIVESHGTISHQHGVGGDHAAYLATEKGGRVVESLQDYFNGFDPKGQLNPGKLFKAIN
HHEEEECCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHC
NQDKAQP
CCCCCCC
>Mature Secondary Structure 
GRAALDNRKWNGWGDKDRSLALSDDGATFITETLGEAQPLPIATLEEVLAKVPASRLDE
CCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCHHHCCC
SELYTTDAEVRLRHARGQSLPDWLAMKSGEFNLFPDAVAFPRSSEEIRALMDAAKYNDWQ
CCEEECCHHHHEEHHCCCCCCHHHHHCCCCCCCCCCHHCCCCCHHHHHHHHHHHCCCCEE
LIPYGGGTSVVGHITPCETDKPVLTISMNKMNRLLALDRVSQLATFGAGVKGPFLESQLQ
EEEECCCCCEEEECCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
AQGYTLGHFPQSFELSTLGGWVVTRSSGQQSLHYGRIENLFAGGEIETFEGKVDIPTLPA
HCCCEECCCCCCCEEEECCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCEECCCCCCC
SSAGPDWRHLVLGSEGHLGILTEAKVRVSRVPEQEFFGVAFMPSWQQGIACAREVIQQGL
CCCCCCCEEEEECCCCCEEEEEHHHHHHHHCCHHHHCCEEECCCHHHHHHHHHHHHHCCC
SLSMLRLSNSIETKTQLFLSANQPQRHWLAKLLSLKGVGDDKCMLIYGITGDKSDNNQSY
CEEHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCHHH
KRLKRIINQFKGVNTGQSLGKKWAHKRFAFPYLRETLWQMGYAIDTLETATNWSNIEPLT
HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCHHH
DKIEQSLKGGLEELGTRVHVFSHLSHLYSDGASIYTTYLFPVAKTYEQTYQQWQKLKSTT
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHH
SKLIVESHGTISHQHGVGGDHAAYLATEKGGRVVESLQDYFNGFDPKGQLNPGKLFKAIN
HHEEEECCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHC
NQDKAQP
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]