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The map label for this gene is glpD [H]

Identifier: 167625240

GI number: 167625240

Start: 4065352

End: 4066989

Strand: Reverse

Name: glpD [H]

Synonym: Shal_3329

Alternate gene names: 167625240

Gene position: 4066989-4065352 (Counterclockwise)

Preceding gene: 167625241

Following gene: 167625239

Centisome position: 77.81

GC content: 51.53

Gene sequence:

>1638_bases
ATGAATACCTTGAGTCAGGCAGCGAAAGCAGCAACTGATGCTATTACTCAGGTGGAGGAGGCTGAGTATGATCTTATCAT
CATTGGGGGGGGGATCACTGGGGCTGGTATTTTCCATCTTGCTGCCAATCAAGGCCTTAAGGTGTTGCTGTTGGAGCAAA
ATGACTTTGCCTGGGGTACATCGAGCCGCTCTTCCAAAATGGTTCATGGGGGTCTGCGTTATCTGGCGACGGGTCAATGG
CGTATGACTCGAGATGCTGCCAGAGAGCGAGAAGTGATGTTGGCGCAGCTGCCGGGCTTGGTGGACTTGATGCCCTATAT
GATGCTGCATAAGAAGGGCGACTTCCCGTCGGCGGCACTTTTTCATCGAGTATTGTCGATTTATGACAAGCTGGCTGGCA
GTAAGCACCACCGCCCCTTGAGTATGGAAAAAGCGCGTACTTGGCTATCGGAGCTGTCTTTCGATGGCATAAATGGGGTG
AGTCTGTTTGCCGATGGAGTCACCGATGATGCGCGCTTGGTATTGCGTGCGCTGCAAGACGGCGTACTCACAGGCGGGCA
GGCGCTTAATTATGTCCGAGTGACAGGCCTCATTGAGCGAGGGGAAAAACAAGATAAAAACGAGCGAGTTTGCGGTGTAA
GGCTTACCTTAGCGAATACTCTGGATAGCCAAGCTTTAGCAGACAAAGAGTACAGTGTGAAAGCTAAGTGTGTCATCAAT
GCTACCGGCAGCTGGGCTGATAAGTTGCATCCATTGCCCCAAGGCGGCTTGAGGCCATTGCGAGGCAGCCATCTGGTGCT
GCCTTTTGAGCGTTTACCCGTCTCGGCTTGCTTGACCTTTTACCACCCTCAAGATGGACGCCCGGTGTATATCTATCCAT
GGCAAGGCTGTTGCGTGATAGGCACGACAGACTTAGATCATAGTGGCTCATTAGATAGTGAGCCGGGGATCTCCCAGCAA
GAGGTCGACTACCTGCTGGGGTTAGCAAGGCATTATTTCCCTAAACAGCAACTCGACGAGCGTGATGTGGTTAGCTGCTG
GAGTGGCATAAGGCCTATTTACAGTGATAGCCAGCACGAAGGTAAGGGCAAAGAGCTATCTAAAGAGCCATCGAAAGAGT
CCCGTGAGCATATTATCTGGTCTAAGCCGGGGCTTATTTCGGTAACCGGCGGCAAGCTAACCAGCTATCATCTGATGGCT
AAAGAGACCTTGGCGCGAGTCTCGCTGCAGCTGCCAAACCTCTTTAGTGCTGAACTGAAAAGAGCGCCTTTTAGCCAAGC
GACACAAGGTTATGCCGATGAGCATTTAACTGGCTACTTTGGACATTTTGCGCCGCATATCGCGGCGATGAACAACGCAC
TTATGATAGGTATTAGTCGCTGCCAATGGCGTGAGCTGGAGTGGTCGCTAGCCAATGAGAGTGTGGTGCATCTGGATGAT
CTCTTGCTACGCCGAACCCGCTTGGCATTGCTGTTAGGCAGCGAAATTAATCAGTACCGAGAGGCGATACTGTCTCTGTG
TTGTCAGCATCTAGCTTGGTCAATGACAAAGGCTGAGAGTGAGTGGTTGCGATTCGAGCAGATCATGAATGCTAGCTACC
GCTTACCGAGCCAACAAGAGAAAAGGGAGTGTCTGTGA

Upstream 100 bases:

>100_bases
TTGAGTCACTGCAGGATTATTTTAACGGCTTCGATCCTAAGGGGCAGTTAAATCCCGGCAAGCTGTTTAAGGCTATTAAT
AACCAAGATAAGGCGCAGCC

Downstream 100 bases:

>100_bases
TAGACAAAAAACAGCAGAGCCAGACACAAACACAAATGCAGATACCAGCAGAGACTCCAGTAGAGAGGCAAGCGGATTAC
ATATTAACCATAGACAACGG

Product: FAD dependent oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 545; Mature: 545

Protein sequence:

>545_residues
MNTLSQAAKAATDAITQVEEAEYDLIIIGGGITGAGIFHLAANQGLKVLLLEQNDFAWGTSSRSSKMVHGGLRYLATGQW
RMTRDAAREREVMLAQLPGLVDLMPYMMLHKKGDFPSAALFHRVLSIYDKLAGSKHHRPLSMEKARTWLSELSFDGINGV
SLFADGVTDDARLVLRALQDGVLTGGQALNYVRVTGLIERGEKQDKNERVCGVRLTLANTLDSQALADKEYSVKAKCVIN
ATGSWADKLHPLPQGGLRPLRGSHLVLPFERLPVSACLTFYHPQDGRPVYIYPWQGCCVIGTTDLDHSGSLDSEPGISQQ
EVDYLLGLARHYFPKQQLDERDVVSCWSGIRPIYSDSQHEGKGKELSKEPSKESREHIIWSKPGLISVTGGKLTSYHLMA
KETLARVSLQLPNLFSAELKRAPFSQATQGYADEHLTGYFGHFAPHIAAMNNALMIGISRCQWRELEWSLANESVVHLDD
LLLRRTRLALLLGSEINQYREAILSLCCQHLAWSMTKAESEWLRFEQIMNASYRLPSQQEKRECL

Sequences:

>Translated_545_residues
MNTLSQAAKAATDAITQVEEAEYDLIIIGGGITGAGIFHLAANQGLKVLLLEQNDFAWGTSSRSSKMVHGGLRYLATGQW
RMTRDAAREREVMLAQLPGLVDLMPYMMLHKKGDFPSAALFHRVLSIYDKLAGSKHHRPLSMEKARTWLSELSFDGINGV
SLFADGVTDDARLVLRALQDGVLTGGQALNYVRVTGLIERGEKQDKNERVCGVRLTLANTLDSQALADKEYSVKAKCVIN
ATGSWADKLHPLPQGGLRPLRGSHLVLPFERLPVSACLTFYHPQDGRPVYIYPWQGCCVIGTTDLDHSGSLDSEPGISQQ
EVDYLLGLARHYFPKQQLDERDVVSCWSGIRPIYSDSQHEGKGKELSKEPSKESREHIIWSKPGLISVTGGKLTSYHLMA
KETLARVSLQLPNLFSAELKRAPFSQATQGYADEHLTGYFGHFAPHIAAMNNALMIGISRCQWRELEWSLANESVVHLDD
LLLRRTRLALLLGSEINQYREAILSLCCQHLAWSMTKAESEWLRFEQIMNASYRLPSQQEKRECL
>Mature_545_residues
MNTLSQAAKAATDAITQVEEAEYDLIIIGGGITGAGIFHLAANQGLKVLLLEQNDFAWGTSSRSSKMVHGGLRYLATGQW
RMTRDAAREREVMLAQLPGLVDLMPYMMLHKKGDFPSAALFHRVLSIYDKLAGSKHHRPLSMEKARTWLSELSFDGINGV
SLFADGVTDDARLVLRALQDGVLTGGQALNYVRVTGLIERGEKQDKNERVCGVRLTLANTLDSQALADKEYSVKAKCVIN
ATGSWADKLHPLPQGGLRPLRGSHLVLPFERLPVSACLTFYHPQDGRPVYIYPWQGCCVIGTTDLDHSGSLDSEPGISQQ
EVDYLLGLARHYFPKQQLDERDVVSCWSGIRPIYSDSQHEGKGKELSKEPSKESREHIIWSKPGLISVTGGKLTSYHLMA
KETLARVSLQLPNLFSAELKRAPFSQATQGYADEHLTGYFGHFAPHIAAMNNALMIGISRCQWRELEWSLANESVVHLDD
LLLRRTRLALLLGSEINQYREAILSLCCQHLAWSMTKAESEWLRFEQIMNASYRLPSQQEKRECL

Specific function: Conversion Of Glycerol 3-Phosphate To Dihydroxyacetone. Uses Molecular Oxygen Or Nitrate As Electron Acceptor. [C]

COG id: COG0578

COG function: function code C; Glycerol-3-phosphate dehydrogenase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI285002233, Length=551, Percent_Identity=29.5825771324864, Blast_Score=206, Evalue=4e-53,
Organism=Homo sapiens, GI285002231, Length=551, Percent_Identity=29.5825771324864, Blast_Score=206, Evalue=4e-53,
Organism=Escherichia coli, GI2367226, Length=484, Percent_Identity=29.5454545454545, Blast_Score=152, Evalue=5e-38,
Organism=Escherichia coli, GI1788574, Length=381, Percent_Identity=26.246719160105, Blast_Score=80, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17509253, Length=559, Percent_Identity=28.6225402504472, Blast_Score=167, Evalue=2e-41,
Organism=Caenorhabditis elegans, GI115534726, Length=565, Percent_Identity=26.3716814159292, Blast_Score=164, Evalue=2e-40,
Organism=Saccharomyces cerevisiae, GI6322036, Length=573, Percent_Identity=26.7015706806283, Blast_Score=156, Evalue=7e-39,
Organism=Drosophila melanogaster, GI161077125, Length=400, Percent_Identity=32.25, Blast_Score=178, Evalue=1e-44,
Organism=Drosophila melanogaster, GI24653942, Length=400, Percent_Identity=32.25, Blast_Score=178, Evalue=1e-44,
Organism=Drosophila melanogaster, GI24653944, Length=400, Percent_Identity=32.25, Blast_Score=178, Evalue=1e-44,
Organism=Drosophila melanogaster, GI20130025, Length=400, Percent_Identity=32.25, Blast_Score=178, Evalue=1e-44,
Organism=Drosophila melanogaster, GI24586295, Length=402, Percent_Identity=29.8507462686567, Blast_Score=139, Evalue=4e-33,
Organism=Drosophila melanogaster, GI19921278, Length=414, Percent_Identity=28.2608695652174, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI45550977, Length=266, Percent_Identity=27.0676691729323, Blast_Score=72, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR000447 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.1.5.3 [H]

Molecular weight: Translated: 60786; Mature: 60786

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTLSQAAKAATDAITQVEEAEYDLIIIGGGITGAGIFHLAANQGLKVLLLEQNDFAWGT
CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHEEEECCCCCEEEEEECCCCCCCC
SSRSSKMVHGGLRYLATGQWRMTRDAAREREVMLAQLPGLVDLMPYMMLHKKGDFPSAAL
CCCCCHHHHCCHHHEECCCEEECHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHH
FHRVLSIYDKLAGSKHHRPLSMEKARTWLSELSFDGINGVSLFADGVTDDARLVLRALQD
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHH
GVLTGGQALNYVRVTGLIERGEKQDKNERVCGVRLTLANTLDSQALADKEYSVKAKCVIN
CCCCCCHHHHHEEEHHHHHCCCCCCCCCCEEEEEEEEHHHCCHHHHCCCCCCEEEEEEEE
ATGSWADKLHPLPQGGLRPLRGSHLVLPFERLPVSACLTFYHPQDGRPVYIYPWQGCCVI
CCCCHHHHCCCCCCCCCCCCCCCEEEEEHHHCCHHHHHEEECCCCCCEEEEEECCCEEEE
GTTDLDHSGSLDSEPGISQQEVDYLLGLARHYFPKQQLDERDVVSCWSGIRPIYSDSQHE
ECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHCCCCCCCCCCCC
GKGKELSKEPSKESREHIIWSKPGLISVTGGKLTSYHLMAKETLARVSLQLPNLFSAELK
CCCCCCCCCCCHHHHCCEEECCCCEEEEECCCCEEHHHHHHHHHHHHHHCCCCHHHHHHH
RAPFSQATQGYADEHLTGYFGHFAPHIAAMNNALMIGISRCQWRELEWSLANESVVHLDD
CCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHCHHHHCCCCHHHHHH
LLLRRTRLALLLGSEINQYREAILSLCCQHLAWSMTKAESEWLRFEQIMNASYRLPSQQE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
KRECL
HHCCC
>Mature Secondary Structure
MNTLSQAAKAATDAITQVEEAEYDLIIIGGGITGAGIFHLAANQGLKVLLLEQNDFAWGT
CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHEEEECCCCCEEEEEECCCCCCCC
SSRSSKMVHGGLRYLATGQWRMTRDAAREREVMLAQLPGLVDLMPYMMLHKKGDFPSAAL
CCCCCHHHHCCHHHEECCCEEECHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHH
FHRVLSIYDKLAGSKHHRPLSMEKARTWLSELSFDGINGVSLFADGVTDDARLVLRALQD
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHH
GVLTGGQALNYVRVTGLIERGEKQDKNERVCGVRLTLANTLDSQALADKEYSVKAKCVIN
CCCCCCHHHHHEEEHHHHHCCCCCCCCCCEEEEEEEEHHHCCHHHHCCCCCCEEEEEEEE
ATGSWADKLHPLPQGGLRPLRGSHLVLPFERLPVSACLTFYHPQDGRPVYIYPWQGCCVI
CCCCHHHHCCCCCCCCCCCCCCCEEEEEHHHCCHHHHHEEECCCCCCEEEEEECCCEEEE
GTTDLDHSGSLDSEPGISQQEVDYLLGLARHYFPKQQLDERDVVSCWSGIRPIYSDSQHE
ECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHCCCCCCCCCCCC
GKGKELSKEPSKESREHIIWSKPGLISVTGGKLTSYHLMAKETLARVSLQLPNLFSAELK
CCCCCCCCCCCHHHHCCEEECCCCEEEEECCCCEEHHHHHHHHHHHHHHCCCCHHHHHHH
RAPFSQATQGYADEHLTGYFGHFAPHIAAMNNALMIGISRCQWRELEWSLANESVVHLDD
CCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHCHHHHCCCCHHHHHH
LLLRRTRLALLLGSEINQYREAILSLCCQHLAWSMTKAESEWLRFEQIMNASYRLPSQQE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
KRECL
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA