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The map label for this gene is ycaO [H]

Identifier: 167625237

GI number: 167625237

Start: 4060657

End: 4062843

Strand: Reverse

Name: ycaO [H]

Synonym: Shal_3326

Alternate gene names: 167625237

Gene position: 4062843-4060657 (Counterclockwise)

Preceding gene: 167625238

Following gene: 167625235

Centisome position: 77.73

GC content: 47.46

Gene sequence:

>2187_bases
ATGGAAATCAAAGTTAACTTTCTCGACAACTTGAGACTCGAAGCCAAGTTTGACGACTTCACCGTTACGGCCGACCAGCC
TATTCGCTACAAAGGCGATGGCTCTGCACCAAGTCCTTTCGATTACTTCTTAGCATCGTCAGCACTGTGTGCGGCTTACT
TTATCAAGGTGTACTGCAAAGCTCGCGATATTCCTACTGAAAACATTCGTTTGTCGCAGAACAACATTGTCGATCCTGAA
GATCGCTATAACCAGATTTTCCAGATTCAAGTTGAGCTACCAGAGGATATTTCGGATAAAGACCGTCAAGGGATTTTGCG
CTCGATTGAGCGTTGTACCGTGAAGAAAGTGGTACAAACCGGACCAGAATTTAAGATTGAAACCGTTGAAAACCTCGATG
CCGACGCTAACGCCATGTTGATGGGTCAAGACGACAGCGACGCGAGCACCTATATCTTAGGTAAAGACCTACCGCTTGAG
CAAACCATTGCCAACATGACGGGTATGTTGGCTGACTTAGGCATGAAAATTGAGATCTCATCTTGGCGCAATATCGTGCC
AAACGTGTGGTCACTGCATATCCGTGATGCGGCCTCTCCTATGTGTTTTACCAATGGTAAAGGCGCGACGAAAGAGAGCG
CGTTATGCTCGGCATTAGGCGAGTTTATCGAGCGTCTAAACTGCAACTTCTTCTATAACGATCAGTTCTTCGGGGAAGAG
ATCGCTAACAGTGAGTTTGTGCATTACCCGAACGAGAAATGGTTCGAGCTTACAGATGATGACTCATTGCCAACGGGCAT
GCTAGATGACTATTGTCTAGCTATCTATAACCCAGAGGGTGAGCTAGGTGGTTCGAACCTTATCGATACCAATTCGGGTA
ATATCGACCGTGGCATCTGTACCATTCCCTACACGCGTCACTCAGATGGCGAAACCGTGTATTTCCCATCGAACCTGATT
GAAAACTTATTCTTAAGTAACGGCATGAGCGCGGGTAACAACCTGCAAGAAGCGCAGGTTCAGTGTCTGTCTGAAATTTT
TGAGCGCGCGGTTAAGCGCCAAATCATTGAGCAAGAAATCGTACTGCCAGATGTACCGATGCAAGTGCTAGAAAAGTACC
CAAGCATTCTTGCGGGCATTAACGGTCTAGAAGAGCAGGGTTTCCCAGTCGTAGTGAAAGACGCATCACTTGGTGGTCAA
TTCCCAGTGATGTGTGTAACGCTAATGAACCCGAAAACTGGTGGCGTATTTGCCTCGTTTGGCGCACACCCAAGTTTCGA
AGTGGCACTGGAGCGTAGCTTAACAGAGCTGCTACAGGGTCGCAGCATCGAAGGTTTAAACGATGTACCTAAGCCAACGT
TCAACAGCATGGCGGTGACTGAACCTGAAAACTTCGTTGAGCACTTTATCGACTCAACGGGCGTGATCTCTTGGCGCTTC
TTTAGCAGCAAGCATGACTATGAGTTCTGTGAGTGGGATTTCTCGGGTACTAACCAAGAGGAAGCCGATGGCCTATTCGG
CATCTTAGAAACCTTAGAGAAAGAGGTTTACACCGCTGAATTTGACCAGCTTGGCGCATCGGCTTGTCGTATGCTGGTTC
CGGGCTTCTCTGAAGTTTACTTGGTGGATGACCTGATTTGGGATAACACCAACAAGGCGCTTGATTACCGTGAAGATATT
TTAAATCTACACTCACTGTCTGATGATGAGCTGGTGGACTTGGTTAATCGTCTAGAAGAGAGCCAGCTAGATAACTACAC
CGACATTCGCACCATGATCGGCATCGTCTTCGATGAAAATACCGTTTGGGGTCAGCTAACCATTATCGAGCTTAAGATCT
TAATCTATCTAGCACTTGGCGCAGCTGAAGAAGCGATGGAGCTTGTGGGTGATTTCCTACAGTACAACGACAACACGGTT
GAGCGCGGTCTGTTCTACCAAGCGGTTAATGCGGTACTTGAAGTTGAAATGGACGACGAGCTAGAGCTTGAGCACTTTAT
CCATAGCTTCAACCGTATGTTTGGTGAAGATGTGATGCAAAACGTCATCGGTTCGGTGAGCGGTGAAGTGCGTTTCTTCG
GCCTAACCAAGACCAGCATGGCGCTTGAAGGCATCGAGCCACATCTGCGATTGATTGAAAGTTATAAAAAGCTGCATAGT
GCCCGTGCAAAGGTGGCAGCTAAGTAA

Upstream 100 bases:

>100_bases
GCCTCAGGGCTCATATTTAAGCTTCTTGGCTCATATTTGAGTGCAAGACTCATATTTGAGCCAAAGGGCGACGCTCGCAA
TAAAGTGGAAATCATATTCA

Downstream 100 bases:

>100_bases
CTAGCGCGATAATGCTAGTCGATGTTAAATGCATTTGATTTAAAGTTCATGTTCGCACAAAAAAGCGAACCCTAATTAGG
GTTCGCTTTTTTGTTTTGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 728; Mature: 728

Protein sequence:

>728_residues
MEIKVNFLDNLRLEAKFDDFTVTADQPIRYKGDGSAPSPFDYFLASSALCAAYFIKVYCKARDIPTENIRLSQNNIVDPE
DRYNQIFQIQVELPEDISDKDRQGILRSIERCTVKKVVQTGPEFKIETVENLDADANAMLMGQDDSDASTYILGKDLPLE
QTIANMTGMLADLGMKIEISSWRNIVPNVWSLHIRDAASPMCFTNGKGATKESALCSALGEFIERLNCNFFYNDQFFGEE
IANSEFVHYPNEKWFELTDDDSLPTGMLDDYCLAIYNPEGELGGSNLIDTNSGNIDRGICTIPYTRHSDGETVYFPSNLI
ENLFLSNGMSAGNNLQEAQVQCLSEIFERAVKRQIIEQEIVLPDVPMQVLEKYPSILAGINGLEEQGFPVVVKDASLGGQ
FPVMCVTLMNPKTGGVFASFGAHPSFEVALERSLTELLQGRSIEGLNDVPKPTFNSMAVTEPENFVEHFIDSTGVISWRF
FSSKHDYEFCEWDFSGTNQEEADGLFGILETLEKEVYTAEFDQLGASACRMLVPGFSEVYLVDDLIWDNTNKALDYREDI
LNLHSLSDDELVDLVNRLEESQLDNYTDIRTMIGIVFDENTVWGQLTIIELKILIYLALGAAEEAMELVGDFLQYNDNTV
ERGLFYQAVNAVLEVEMDDELELEHFIHSFNRMFGEDVMQNVIGSVSGEVRFFGLTKTSMALEGIEPHLRLIESYKKLHS
ARAKVAAK

Sequences:

>Translated_728_residues
MEIKVNFLDNLRLEAKFDDFTVTADQPIRYKGDGSAPSPFDYFLASSALCAAYFIKVYCKARDIPTENIRLSQNNIVDPE
DRYNQIFQIQVELPEDISDKDRQGILRSIERCTVKKVVQTGPEFKIETVENLDADANAMLMGQDDSDASTYILGKDLPLE
QTIANMTGMLADLGMKIEISSWRNIVPNVWSLHIRDAASPMCFTNGKGATKESALCSALGEFIERLNCNFFYNDQFFGEE
IANSEFVHYPNEKWFELTDDDSLPTGMLDDYCLAIYNPEGELGGSNLIDTNSGNIDRGICTIPYTRHSDGETVYFPSNLI
ENLFLSNGMSAGNNLQEAQVQCLSEIFERAVKRQIIEQEIVLPDVPMQVLEKYPSILAGINGLEEQGFPVVVKDASLGGQ
FPVMCVTLMNPKTGGVFASFGAHPSFEVALERSLTELLQGRSIEGLNDVPKPTFNSMAVTEPENFVEHFIDSTGVISWRF
FSSKHDYEFCEWDFSGTNQEEADGLFGILETLEKEVYTAEFDQLGASACRMLVPGFSEVYLVDDLIWDNTNKALDYREDI
LNLHSLSDDELVDLVNRLEESQLDNYTDIRTMIGIVFDENTVWGQLTIIELKILIYLALGAAEEAMELVGDFLQYNDNTV
ERGLFYQAVNAVLEVEMDDELELEHFIHSFNRMFGEDVMQNVIGSVSGEVRFFGLTKTSMALEGIEPHLRLIESYKKLHS
ARAKVAAK
>Mature_728_residues
MEIKVNFLDNLRLEAKFDDFTVTADQPIRYKGDGSAPSPFDYFLASSALCAAYFIKVYCKARDIPTENIRLSQNNIVDPE
DRYNQIFQIQVELPEDISDKDRQGILRSIERCTVKKVVQTGPEFKIETVENLDADANAMLMGQDDSDASTYILGKDLPLE
QTIANMTGMLADLGMKIEISSWRNIVPNVWSLHIRDAASPMCFTNGKGATKESALCSALGEFIERLNCNFFYNDQFFGEE
IANSEFVHYPNEKWFELTDDDSLPTGMLDDYCLAIYNPEGELGGSNLIDTNSGNIDRGICTIPYTRHSDGETVYFPSNLI
ENLFLSNGMSAGNNLQEAQVQCLSEIFERAVKRQIIEQEIVLPDVPMQVLEKYPSILAGINGLEEQGFPVVVKDASLGGQ
FPVMCVTLMNPKTGGVFASFGAHPSFEVALERSLTELLQGRSIEGLNDVPKPTFNSMAVTEPENFVEHFIDSTGVISWRF
FSSKHDYEFCEWDFSGTNQEEADGLFGILETLEKEVYTAEFDQLGASACRMLVPGFSEVYLVDDLIWDNTNKALDYREDI
LNLHSLSDDELVDLVNRLEESQLDNYTDIRTMIGIVFDENTVWGQLTIIELKILIYLALGAAEEAMELVGDFLQYNDNTV
ERGLFYQAVNAVLEVEMDDELELEHFIHSFNRMFGEDVMQNVIGSVSGEVRFFGLTKTSMALEGIEPHLRLIESYKKLHS
ARAKVAAK

Specific function: Unknown

COG id: COG1944

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0142 family [H]

Homologues:

Organism=Escherichia coli, GI87081799, Length=583, Percent_Identity=46.8267581475129, Blast_Score=550, Evalue=1e-157,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003776 [H]

Pfam domain/function: PF02624 YcaO [H]

EC number: NA

Molecular weight: Translated: 81842; Mature: 81842

Theoretical pI: Translated: 4.10; Mature: 4.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIKVNFLDNLRLEAKFDDFTVTADQPIRYKGDGSAPSPFDYFLASSALCAAYFIKVYCK
CEEEEEEHHCCEEEEECCCEEEECCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
ARDIPTENIRLSQNNIVDPEDRYNQIFQIQVELPEDISDKDRQGILRSIERCTVKKVVQT
HCCCCCCCEEECCCCCCCCHHHCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHC
GPEFKIETVENLDADANAMLMGQDDSDASTYILGKDLPLEQTIANMTGMLADLGMKIEIS
CCCEEEEEHHCCCCCCCEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEEC
SWRNIVPNVWSLHIRDAASPMCFTNGKGATKESALCSALGEFIERLNCNFFYNDQFFGEE
CHHCCCCCHHEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCEEECCCHHHHH
IANSEFVHYPNEKWFELTDDDSLPTGMLDDYCLAIYNPEGELGGSNLIDTNSGNIDRGIC
HCCCCEEECCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCEEECCCCCCCCCEE
TIPYTRHSDGETVYFPSNLIENLFLSNGMSAGNNLQEAQVQCLSEIFERAVKRQIIEQEI
ECCCEECCCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
VLPDVPMQVLEKYPSILAGINGLEEQGFPVVVKDASLGGQFPVMCVTLMNPKTGGVFASF
CCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEC
GAHPSFEVALERSLTELLQGRSIEGLNDVPKPTFNSMAVTEPENFVEHFIDSTGVISWRF
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHCCCCEEEEEE
FSSKHDYEFCEWDFSGTNQEEADGLFGILETLEKEVYTAEFDQLGASACRMLVPGFSEVY
ECCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
LVDDLIWDNTNKALDYREDILNLHSLSDDELVDLVNRLEESQLDNYTDIRTMIGIVFDEN
EEHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHEEEEECC
TVWGQLTIIELKILIYLALGAAEEAMELVGDFLQYNDNTVERGLFYQAVNAVLEVEMDDE
CCEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEECCCCC
LELEHFIHSFNRMFGEDVMQNVIGSVSGEVRFFGLTKTSMALEGIEPHLRLIESYKKLHS
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCHHHHHHHHHHHHHH
ARAKVAAK
HHHHHCCC
>Mature Secondary Structure
MEIKVNFLDNLRLEAKFDDFTVTADQPIRYKGDGSAPSPFDYFLASSALCAAYFIKVYCK
CEEEEEEHHCCEEEEECCCEEEECCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
ARDIPTENIRLSQNNIVDPEDRYNQIFQIQVELPEDISDKDRQGILRSIERCTVKKVVQT
HCCCCCCCEEECCCCCCCCHHHCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHC
GPEFKIETVENLDADANAMLMGQDDSDASTYILGKDLPLEQTIANMTGMLADLGMKIEIS
CCCEEEEEHHCCCCCCCEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEEC
SWRNIVPNVWSLHIRDAASPMCFTNGKGATKESALCSALGEFIERLNCNFFYNDQFFGEE
CHHCCCCCHHEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCEEECCCHHHHH
IANSEFVHYPNEKWFELTDDDSLPTGMLDDYCLAIYNPEGELGGSNLIDTNSGNIDRGIC
HCCCCEEECCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCEEECCCCCCCCCEE
TIPYTRHSDGETVYFPSNLIENLFLSNGMSAGNNLQEAQVQCLSEIFERAVKRQIIEQEI
ECCCEECCCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
VLPDVPMQVLEKYPSILAGINGLEEQGFPVVVKDASLGGQFPVMCVTLMNPKTGGVFASF
CCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEC
GAHPSFEVALERSLTELLQGRSIEGLNDVPKPTFNSMAVTEPENFVEHFIDSTGVISWRF
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHCCCCEEEEEE
FSSKHDYEFCEWDFSGTNQEEADGLFGILETLEKEVYTAEFDQLGASACRMLVPGFSEVY
ECCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
LVDDLIWDNTNKALDYREDILNLHSLSDDELVDLVNRLEESQLDNYTDIRTMIGIVFDEN
EEHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHEEEEECC
TVWGQLTIIELKILIYLALGAAEEAMELVGDFLQYNDNTVERGLFYQAVNAVLEVEMDDE
CCEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEECCCCC
LELEHFIHSFNRMFGEDVMQNVIGSVSGEVRFFGLTKTSMALEGIEPHLRLIESYKKLHS
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCHHHHHHHHHHHHHH
ARAKVAAK
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]