| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167625192
Identifier: 167625192
GI number: 167625192
Start: 3998947
End: 3999681
Strand: Reverse
Name: 167625192
Synonym: Shal_3280
Alternate gene names: NA
Gene position: 3999681-3998947 (Counterclockwise)
Preceding gene: 167625193
Following gene: 167625191
Centisome position: 76.52
GC content: 44.49
Gene sequence:
>735_bases ATGAAGACTCGTAAAACAGGTAATAATTTAGGCTGTAAGCAGCCAATATTTAAAAGTAGGCTTCAAGCCACACTCTTTAT AACAACTATAGCCGCATTTGCATTATATTGCGCTATGTTGGTCATCAGTCAAAATGTGAAAGCTGAAGACTCAAGAGTAA AACCGATGTGGGCGACAGCTCCAACGATGAAGGAGATGATAAATTCTAATCGCTCAGCCCTGTTTCATCGTGCTACCGAC CCGTGGAAAGGTGCTGAAAAACCACAAGTCACCATGGTTTACTTTACCGATTTTAACTGCCCTTACTGCAAGAAACTGGA GCCCGAGTTAGATAAGCTCATGGCTGAGTATCCACAGCTTAAAATCATAGTGAAAATGGTGCCATTACAAGGCCAAAGCT CAGTTGAGGCAGTCGATTTTGCACAAAGGGTCTGGTTAAATGAGCCCGCTAAGTTTCTCAAGCTGAAAGATACATTGATG GCGGCGCCTCGTAGGCTAGATAGGCAAACTCTCGCTAAAGCTGCAGCGATGACAAAGACTAGCCAATGGTTGACTCAGGC TGAGAAAAGCATATCACCAGCCATTTCAGATAACTTAGAGTTAATGAGGGGCTTAAGGATAGGCGGCACACCGAGTATGG TGATTGGAGAGCAAATTATTGTGGGCTTGGTGCCATTTGAACGACTAAAACAGCAAGTCGAACTCACATTGGAGGCACGA GATGAGCACGGATAG
Upstream 100 bases:
>100_bases TTGGACAATAGCGCACAGTGCAAGCGCTTAACCGTTATAAATAGAGCGCTACTATTAGCAGCGCCACGAGATAATCTAAG AGAAAACCTAAGTGAAAAGA
Downstream 100 bases:
>100_bases TCAAAGGCCAGATAAGTCGAATACGAGTGACAGTCGTGCTGATGGTGCAAATCGTGCGGATAGCGTAGGTAAGCCTCTGC CATTTGGTCGTAGATTAATT
Product: DSBA oxidoreductase
Products: NA
Alternate protein names: Outer Membrane Protein; Dsba Oxidoreductase; DsbA Oxidoreductase; ThiolDisulfide Interchange Protein DsbA; Suppressor For Copper-Sensitivity C; Metal Resistance Protein; Secreted Protein Suppressor For Copper-Sensitivity ScsC; DSBA-Like Thioredoxin Domain Protein; Secreted Protein Suppressor For Copper-Sensitivity C; Protein-Disulfide Isomerase; ThiolDisulfide Oxidoreductase; DSBA-Like Thioredoxin Domain-Containing Protein; DSBA Family Oxidoreductase; Thioredoxin Domain-Containing Protein; Copper-Sensitivity Suppressor C Protein; Copper Sensitivity Protein ScsC; Thioredoxin Domain Protein; Secreted Copper-Sensitivity Suppressor C; 27 KDa Outer Membrane Protein
Number of amino acids: Translated: 244; Mature: 244
Protein sequence:
>244_residues MKTRKTGNNLGCKQPIFKSRLQATLFITTIAAFALYCAMLVISQNVKAEDSRVKPMWATAPTMKEMINSNRSALFHRATD PWKGAEKPQVTMVYFTDFNCPYCKKLEPELDKLMAEYPQLKIIVKMVPLQGQSSVEAVDFAQRVWLNEPAKFLKLKDTLM AAPRRLDRQTLAKAAAMTKTSQWLTQAEKSISPAISDNLELMRGLRIGGTPSMVIGEQIIVGLVPFERLKQQVELTLEAR DEHG
Sequences:
>Translated_244_residues MKTRKTGNNLGCKQPIFKSRLQATLFITTIAAFALYCAMLVISQNVKAEDSRVKPMWATAPTMKEMINSNRSALFHRATD PWKGAEKPQVTMVYFTDFNCPYCKKLEPELDKLMAEYPQLKIIVKMVPLQGQSSVEAVDFAQRVWLNEPAKFLKLKDTLM AAPRRLDRQTLAKAAAMTKTSQWLTQAEKSISPAISDNLELMRGLRIGGTPSMVIGEQIIVGLVPFERLKQQVELTLEAR DEHG >Mature_244_residues MKTRKTGNNLGCKQPIFKSRLQATLFITTIAAFALYCAMLVISQNVKAEDSRVKPMWATAPTMKEMINSNRSALFHRATD PWKGAEKPQVTMVYFTDFNCPYCKKLEPELDKLMAEYPQLKIIVKMVPLQGQSSVEAVDFAQRVWLNEPAKFLKLKDTLM AAPRRLDRQTLAKAAAMTKTSQWLTQAEKSISPAISDNLELMRGLRIGGTPSMVIGEQIIVGLVPFERLKQQVELTLEAR DEHG
Specific function: Unknown
COG id: COG1651
COG function: function code O; Protein-disulfide isomerase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27491; Mature: 27491
Theoretical pI: Translated: 10.05; Mature: 10.05
Prosite motif: PS00194 THIOREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTRKTGNNLGCKQPIFKSRLQATLFITTIAAFALYCAMLVISQNVKAEDSRVKPMWATA CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCC PTMKEMINSNRSALFHRATDPWKGAEKPQVTMVYFTDFNCPYCKKLEPELDKLMAEYPQL HHHHHHHCCCHHEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCE KIIVKMVPLQGQSSVEAVDFAQRVWLNEPAKFLKLKDTLMAAPRRLDRQTLAKAAAMTKT EEEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SQWLTQAEKSISPAISDNLELMRGLRIGGTPSMVIGEQIIVGLVPFERLKQQVELTLEAR HHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHEECC DEHG CCCC >Mature Secondary Structure MKTRKTGNNLGCKQPIFKSRLQATLFITTIAAFALYCAMLVISQNVKAEDSRVKPMWATA CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCC PTMKEMINSNRSALFHRATDPWKGAEKPQVTMVYFTDFNCPYCKKLEPELDKLMAEYPQL HHHHHHHCCCHHEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHCCCE KIIVKMVPLQGQSSVEAVDFAQRVWLNEPAKFLKLKDTLMAAPRRLDRQTLAKAAAMTKT EEEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SQWLTQAEKSISPAISDNLELMRGLRIGGTPSMVIGEQIIVGLVPFERLKQQVELTLEAR HHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHEECC DEHG CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA