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The map label for this gene is yjcF [C]

Identifier: 167625084

GI number: 167625084

Start: 3875325

End: 3877370

Strand: Reverse

Name: yjcF [C]

Synonym: Shal_3172

Alternate gene names: 167625084

Gene position: 3877370-3875325 (Counterclockwise)

Preceding gene: 167625085

Following gene: 167625083

Centisome position: 74.18

GC content: 48.53

Gene sequence:

>2046_bases
GTGCAGACTATCAATGATTACCGCAGCAACTTTAACGTGTTGTTAGCGTTAACATTCTCTCTCACTTTCGTGACAGCTTG
TGAAAGCGACGACAATGATACTCAAATACAGTCAGACCTTTTAACCGAAAAGGACTTTGCCAATAATAGTCGCTTACGTG
CCAACCCTGAACAAGGTACCGTTGCTTTATTTCTCGAGCCACCTTCGGCAACTGTAGAGGGTGACTCTAATGGCGAGTCA
GGCTCTGACATCATCCCCTACCAATATTCGCGTCCCCTCAAGCATACATTTTGCTATGAAGATGGTAACAGCAATTCAAA
TCACTCTATGGTGCTTAATAATAGCAGTGGCGATGAAGTACTTAGCGTTACAGCCAATGATGAATGCGCATCGGCAGTAA
TTCCTGCTGGGGAATATCAGCTGGTACTGACCCATGGTCAGCATGTAGATAGTACTGATACTACCTTCTTGGTGACGACG
CCTGATAGTGGTTCGCAGCTAGAAGCTAATAGCGTTAATTATTCGATTGTTTCCAAACTACTGAGTACCATTGGCAATAT
CCTGATAAGCCCAGCTTATGCAGACACTGCAGATGATAATGTGACTACGCTTATTTCCACCAACGCATGCAAGAATTGTG
ATTTGTCAGGCGCAGACTTGGATAATGCAACACTCACATTTGCTGATCTTTCCGGCGCTGATTTAAGTGATGCCATATTA
ACCAATGTCGACCTTTTTGAATCAACGCTCACTGGAACCAACTTTAGTGGCGCCGATATGAGCAACGGTGATTTTCGTGG
TTCGGAAATGACGTATGCAGATCTCAGTAATGCCAATCTAAGTGGGGCTTCTTTTTCCAGCGCTCAATTATCCCCTGCGG
ACCTTGATAAAGCGACTGTCACGGATACAGATTTTGATAACGCCAACCTCGTTGGCGCGACATGGGTCGACGGAGGCATT
TGTGATATCACCTCTGTTGGCTTTTGTAATTCAACCGCGGTTGCCGAGTCTGACCCGTGCGATTCTGTTAAGCAGGATGT
TACCGATGATGGCAACACCGTCTATAAATGTTTACTGCCAGCCGTTGATAAAGAAGTTTGTACCACCGAGTCTGGTGGTC
TTGATGGTGGCACGTCAATAACAAGCTGTGAAGCAAAAGATACTTCAGAGCTGGTTATGTCTGTTAATCTTGTCGATATC
TTCAGCCAGGTTAGCTCATCCTTTGATGCAACTCTGGACAACGACACTCCCATGGCCATTTTAGCCTGGGGGGGAGAAGG
TGGCATTGGCTCTAGTGGTGGACTCTGGACCTCTGGGGGGGATGGTGGTAAGAGCGGTTTTGCATCAACAGTCACGACGT
TATCTCATTTCCTAGACGATTATGGGCAAACATCATTCAATTTCTTCATCGGTGAAAAAGGCACACTGAGTAATATCGAT
GGTGACGGAGGCTCTTCGACACTGGTCATGATTGCAGAAAGTAGCCCTGCTTCACTTGAAGACGATATCATACTTATTGC
TGGCGGTGGCGGCGGTGGTGACTCTTCTGGATGGCTTAACGATGGTACAGATGGCGGTGCTGGTGGCGTTGCAGCCTCAT
CAATCATCGGTCAGGGAACCATTGGCGTAGGCCAAGCCATTATCGGTGTAGCCGACGGTGGCAGCACGGATGAATGGGGG
AATGGTGGAAGTGGCGCCAATGACGGCAAAAATGGCATTGGTGGTCAAGGCGGACAAGCATTTTTAGGGCTTAATAGTGA
GTGGGTAAATGGCGATCCTGGGGTCGGTTCAGACGGCAGGGGCGGCAATGCAGATGATAGCTTTAGCGCTTCTGGCGGCG
GTGGCGGCGGAGGTGGTTATGGTGGCGGTGGTGCTGGCGATGATGGAGCAGGAGCCGGTGGCGGAAGCTGGTCAGTCATC
CCTGCCACAACCTGTAATAGCGCACCCACTCAAGACACTGCACTTTCAAACCCTAGTTCATCAGCTGATGACTTTGGCAG
TAAAGATGGCGCGGTTGAAGTTTGGATATTTCCAAAGGGCTGTTAG

Upstream 100 bases:

>100_bases
TCACTATCATAAAGGATAATGACGCCTTGCGCGTTCAGAGGCTTGGGATAGCCCATTATTACTATTTCAGAAAAATCTGT
TCCATTATAAGGAAAATAAC

Downstream 100 bases:

>100_bases
TCACAGATAAAACAAGCTGAGAGTAGGGCATTTTTTTCCGTTCTCAGCCAGCTCGATTTACGTGTTAGCTCACCTGTTTT
AATAAATGCCTGTATCTGTT

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 681; Mature: 681

Protein sequence:

>681_residues
MQTINDYRSNFNVLLALTFSLTFVTACESDDNDTQIQSDLLTEKDFANNSRLRANPEQGTVALFLEPPSATVEGDSNGES
GSDIIPYQYSRPLKHTFCYEDGNSNSNHSMVLNNSSGDEVLSVTANDECASAVIPAGEYQLVLTHGQHVDSTDTTFLVTT
PDSGSQLEANSVNYSIVSKLLSTIGNILISPAYADTADDNVTTLISTNACKNCDLSGADLDNATLTFADLSGADLSDAIL
TNVDLFESTLTGTNFSGADMSNGDFRGSEMTYADLSNANLSGASFSSAQLSPADLDKATVTDTDFDNANLVGATWVDGGI
CDITSVGFCNSTAVAESDPCDSVKQDVTDDGNTVYKCLLPAVDKEVCTTESGGLDGGTSITSCEAKDTSELVMSVNLVDI
FSQVSSSFDATLDNDTPMAILAWGGEGGIGSSGGLWTSGGDGGKSGFASTVTTLSHFLDDYGQTSFNFFIGEKGTLSNID
GDGGSSTLVMIAESSPASLEDDIILIAGGGGGGDSSGWLNDGTDGGAGGVAASSIIGQGTIGVGQAIIGVADGGSTDEWG
NGGSGANDGKNGIGGQGGQAFLGLNSEWVNGDPGVGSDGRGGNADDSFSASGGGGGGGGYGGGGAGDDGAGAGGGSWSVI
PATTCNSAPTQDTALSNPSSSADDFGSKDGAVEVWIFPKGC

Sequences:

>Translated_681_residues
MQTINDYRSNFNVLLALTFSLTFVTACESDDNDTQIQSDLLTEKDFANNSRLRANPEQGTVALFLEPPSATVEGDSNGES
GSDIIPYQYSRPLKHTFCYEDGNSNSNHSMVLNNSSGDEVLSVTANDECASAVIPAGEYQLVLTHGQHVDSTDTTFLVTT
PDSGSQLEANSVNYSIVSKLLSTIGNILISPAYADTADDNVTTLISTNACKNCDLSGADLDNATLTFADLSGADLSDAIL
TNVDLFESTLTGTNFSGADMSNGDFRGSEMTYADLSNANLSGASFSSAQLSPADLDKATVTDTDFDNANLVGATWVDGGI
CDITSVGFCNSTAVAESDPCDSVKQDVTDDGNTVYKCLLPAVDKEVCTTESGGLDGGTSITSCEAKDTSELVMSVNLVDI
FSQVSSSFDATLDNDTPMAILAWGGEGGIGSSGGLWTSGGDGGKSGFASTVTTLSHFLDDYGQTSFNFFIGEKGTLSNID
GDGGSSTLVMIAESSPASLEDDIILIAGGGGGGDSSGWLNDGTDGGAGGVAASSIIGQGTIGVGQAIIGVADGGSTDEWG
NGGSGANDGKNGIGGQGGQAFLGLNSEWVNGDPGVGSDGRGGNADDSFSASGGGGGGGGYGGGGAGDDGAGAGGGSWSVI
PATTCNSAPTQDTALSNPSSSADDFGSKDGAVEVWIFPKGC
>Mature_681_residues
MQTINDYRSNFNVLLALTFSLTFVTACESDDNDTQIQSDLLTEKDFANNSRLRANPEQGTVALFLEPPSATVEGDSNGES
GSDIIPYQYSRPLKHTFCYEDGNSNSNHSMVLNNSSGDEVLSVTANDECASAVIPAGEYQLVLTHGQHVDSTDTTFLVTT
PDSGSQLEANSVNYSIVSKLLSTIGNILISPAYADTADDNVTTLISTNACKNCDLSGADLDNATLTFADLSGADLSDAIL
TNVDLFESTLTGTNFSGADMSNGDFRGSEMTYADLSNANLSGASFSSAQLSPADLDKATVTDTDFDNANLVGATWVDGGI
CDITSVGFCNSTAVAESDPCDSVKQDVTDDGNTVYKCLLPAVDKEVCTTESGGLDGGTSITSCEAKDTSELVMSVNLVDI
FSQVSSSFDATLDNDTPMAILAWGGEGGIGSSGGLWTSGGDGGKSGFASTVTTLSHFLDDYGQTSFNFFIGEKGTLSNID
GDGGSSTLVMIAESSPASLEDDIILIAGGGGGGDSSGWLNDGTDGGAGGVAASSIIGQGTIGVGQAIIGVADGGSTDEWG
NGGSGANDGKNGIGGQGGQAFLGLNSEWVNGDPGVGSDGRGGNADDSFSASGGGGGGGGYGGGGAGDDGAGAGGGSWSVI
PATTCNSAPTQDTALSNPSSSADDFGSKDGAVEVWIFPKGC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 68697; Mature: 68697

Theoretical pI: Translated: 3.52; Mature: 3.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTINDYRSNFNVLLALTFSLTFVTACESDDNDTQIQSDLLTEKDFANNSRLRANPEQGT
CCCHHHHHCCCEEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCE
VALFLEPPSATVEGDSNGESGSDIIPYQYSRPLKHTFCYEDGNSNSNHSMVLNNSSGDEV
EEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCEE
LSVTANDECASAVIPAGEYQLVLTHGQHVDSTDTTFLVTTPDSGSQLEANSVNYSIVSKL
EEEECCCCHHHHCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCEEECCCCCHHHHHHH
LSTIGNILISPAYADTADDNVTTLISTNACKNCDLSGADLDNATLTFADLSGADLSDAIL
HHHHHHHEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHH
TNVDLFESTLTGTNFSGADMSNGDFRGSEMTYADLSNANLSGASFSSAQLSPADLDKATV
HHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEE
TDTDFDNANLVGATWVDGGICDITSVGFCNSTAVAESDPCDSVKQDVTDDGNTVYKCLLP
CCCCCCCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEHHH
AVDKEVCTTESGGLDGGTSITSCEAKDTSELVMSVNLVDIFSQVSSSFDATLDNDTPMAI
HHCHHHHCCCCCCCCCCCCEEECCCCCCCHHEEEHHHHHHHHHHHHCCCCCCCCCCCEEE
LAWGGEGGIGSSGGLWTSGGDGGKSGFASTVTTLSHFLDDYGQTSFNFFIGEKGTLSNID
EEECCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
GDGGSSTLVMIAESSPASLEDDIILIAGGGGGGDSSGWLNDGTDGGAGGVAASSIIGQGT
CCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC
IGVGQAIIGVADGGSTDEWGNGGSGANDGKNGIGGQGGQAFLGLNSEWVNGDPGVGSDGR
CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
GGNADDSFSASGGGGGGGGYGGGGAGDDGAGAGGGSWSVIPATTCNSAPTQDTALSNPSS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC
SADDFGSKDGAVEVWIFPKGC
CCHHCCCCCCCEEEEEECCCC
>Mature Secondary Structure
MQTINDYRSNFNVLLALTFSLTFVTACESDDNDTQIQSDLLTEKDFANNSRLRANPEQGT
CCCHHHHHCCCEEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCE
VALFLEPPSATVEGDSNGESGSDIIPYQYSRPLKHTFCYEDGNSNSNHSMVLNNSSGDEV
EEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCEE
LSVTANDECASAVIPAGEYQLVLTHGQHVDSTDTTFLVTTPDSGSQLEANSVNYSIVSKL
EEEECCCCHHHHCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCEEECCCCCHHHHHHH
LSTIGNILISPAYADTADDNVTTLISTNACKNCDLSGADLDNATLTFADLSGADLSDAIL
HHHHHHHEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHH
TNVDLFESTLTGTNFSGADMSNGDFRGSEMTYADLSNANLSGASFSSAQLSPADLDKATV
HHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEE
TDTDFDNANLVGATWVDGGICDITSVGFCNSTAVAESDPCDSVKQDVTDDGNTVYKCLLP
CCCCCCCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEHHH
AVDKEVCTTESGGLDGGTSITSCEAKDTSELVMSVNLVDIFSQVSSSFDATLDNDTPMAI
HHCHHHHCCCCCCCCCCCCEEECCCCCCCHHEEEHHHHHHHHHHHHCCCCCCCCCCCEEE
LAWGGEGGIGSSGGLWTSGGDGGKSGFASTVTTLSHFLDDYGQTSFNFFIGEKGTLSNID
EEECCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
GDGGSSTLVMIAESSPASLEDDIILIAGGGGGGDSSGWLNDGTDGGAGGVAASSIIGQGT
CCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC
IGVGQAIIGVADGGSTDEWGNGGSGANDGKNGIGGQGGQAFLGLNSEWVNGDPGVGSDGR
CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC
GGNADDSFSASGGGGGGGGYGGGGAGDDGAGAGGGSWSVIPATTCNSAPTQDTALSNPSS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC
SADDFGSKDGAVEVWIFPKGC
CCHHCCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA