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The map label for this gene is dapB [H]

Identifier: 167625075

GI number: 167625075

Start: 3862895

End: 3863710

Strand: Reverse

Name: dapB [H]

Synonym: Shal_3163

Alternate gene names: 167625075

Gene position: 3863710-3862895 (Counterclockwise)

Preceding gene: 167625076

Following gene: 167625074

Centisome position: 73.92

GC content: 48.28

Gene sequence:

>816_bases
ATGACTGAACGCGTAAGAGTGGCAATAACAGGCGGCAGCGGTCGTATGGGACGTACTCTTATTGAAGCGGCAAAACAAAA
TGGCATCATTTTGTTGGGCGCGGCGATTGAACGAGCTGGTTCGACCCTAATGGGTGTTGATGCGGGTGAACTTGCCGGTG
TAGGCTCGATGAACGTGGCTATCACCGACTCATTGGATAAAGCGGTAAATGACTTTGATGTGCTTATCGACTTTACCTCA
CCAGAAGCGAGTGTGTTTCATACAGACTGGTGCGCGAAAAACGGCAAGGCAATCGTTATCGGTACCACTGGATTCAATCA
TGCTCAGAAAGAACAAATTTCAGCCTATGCAGATCAAATACCGATTGTAATGGCACCCAATATGGCCGTCGGCGTTAACC
TGATGTGGAAACTACTTGAAGTGACTGCAGAGGTAATGGGGCATTACTGTGATATCGAGATCATCGAAGGTCACCACAGA
TATAAGAAAGATGCACCTTCTGGGACTGCGCTTAAGATGGGTGAGGTGATCGCCGAAACCTTAGGTCGTGATCTTGAAAA
ATGTGCCGTTTATGGCCGTGAAGGGATGACTGGTGAGCGTGACAGAGAAACCATAGGTTTTGCTACTGTTCGTGCTGGTG
ACATTGTTGGTGAGCATACAGCGCTTTTTGCCGATATCGGTGAGCGGTTAGAGATCACCCATAAAGCATCGAGTCGAATG
ACCTTTGCTAATGGCGCTATGCGCGCTGCCACTTGGCTGGTCGAGCAAGATGCAGGACTCTACGATATGCAACAAGTCTT
AGGCTTGAAAGCATAA

Upstream 100 bases:

>100_bases
TTTGGTATTCGAAGTTGAATTGTTAGACATTATCTAAGTTAGACAATAAGCCTAAGTTAATACTTAGGCTTTTTTTTGAC
ATTTTGCAGGGAGTACTGAG

Downstream 100 bases:

>100_bases
ATATTTAAAACCGCTATTAGCGGTTTTTTTTTGCATAAAAAATTTTTTTGACAAAATACTTTCTTCAGCTATAGACAAGT
TTTGTATTTACATATAAAAT

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MTERVRVAITGGSGRMGRTLIEAAKQNGIILLGAAIERAGSTLMGVDAGELAGVGSMNVAITDSLDKAVNDFDVLIDFTS
PEASVFHTDWCAKNGKAIVIGTTGFNHAQKEQISAYADQIPIVMAPNMAVGVNLMWKLLEVTAEVMGHYCDIEIIEGHHR
YKKDAPSGTALKMGEVIAETLGRDLEKCAVYGREGMTGERDRETIGFATVRAGDIVGEHTALFADIGERLEITHKASSRM
TFANGAMRAATWLVEQDAGLYDMQQVLGLKA

Sequences:

>Translated_271_residues
MTERVRVAITGGSGRMGRTLIEAAKQNGIILLGAAIERAGSTLMGVDAGELAGVGSMNVAITDSLDKAVNDFDVLIDFTS
PEASVFHTDWCAKNGKAIVIGTTGFNHAQKEQISAYADQIPIVMAPNMAVGVNLMWKLLEVTAEVMGHYCDIEIIEGHHR
YKKDAPSGTALKMGEVIAETLGRDLEKCAVYGREGMTGERDRETIGFATVRAGDIVGEHTALFADIGERLEITHKASSRM
TFANGAMRAATWLVEQDAGLYDMQQVLGLKA
>Mature_270_residues
TERVRVAITGGSGRMGRTLIEAAKQNGIILLGAAIERAGSTLMGVDAGELAGVGSMNVAITDSLDKAVNDFDVLIDFTSP
EASVFHTDWCAKNGKAIVIGTTGFNHAQKEQISAYADQIPIVMAPNMAVGVNLMWKLLEVTAEVMGHYCDIEIIEGHHRY
KKDAPSGTALKMGEVIAETLGRDLEKCAVYGREGMTGERDRETIGFATVRAGDIVGEHTALFADIGERLEITHKASSRMT
FANGAMRAATWLVEQDAGLYDMQQVLGLKA

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=266, Percent_Identity=63.9097744360902, Blast_Score=327, Evalue=5e-91,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 29061; Mature: 28929

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTERVRVAITGGSGRMGRTLIEAAKQNGIILLGAAIERAGSTLMGVDAGELAGVGSMNVA
CCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEHHHHHCCCEEEECCCHHHCCCCCCEEE
ITDSLDKAVNDFDVLIDFTSPEASVFHTDWCAKNGKAIVIGTTGFNHAQKEQISAYADQI
EECCHHHHCCCEEEEEEECCCCCEEEECHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCC
PIVMAPNMAVGVNLMWKLLEVTAEVMGHYCDIEIIEGHHRYKKDAPSGTALKMGEVIAET
CEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHCCCCCCCCHHHHHHHHHHH
LGRDLEKCAVYGREGMTGERDRETIGFATVRAGDIVGEHTALFADIGERLEITHKASSRM
HCCCHHHHHHHCCCCCCCCCCCCHHEEEEEECCCCCCCHHHHHHHHCCCEEEEECCCCCE
TFANGAMRAATWLVEQDAGLYDMQQVLGLKA
EECCCCHHHHHEEEECCCCHHHHHHHHCCCC
>Mature Secondary Structure 
TERVRVAITGGSGRMGRTLIEAAKQNGIILLGAAIERAGSTLMGVDAGELAGVGSMNVA
CCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEHHHHHCCCEEEECCCHHHCCCCCCEEE
ITDSLDKAVNDFDVLIDFTSPEASVFHTDWCAKNGKAIVIGTTGFNHAQKEQISAYADQI
EECCHHHHCCCEEEEEEECCCCCEEEECHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCC
PIVMAPNMAVGVNLMWKLLEVTAEVMGHYCDIEIIEGHHRYKKDAPSGTALKMGEVIAET
CEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHCCCCCCCCHHHHHHHHHHH
LGRDLEKCAVYGREGMTGERDRETIGFATVRAGDIVGEHTALFADIGERLEITHKASSRM
HCCCHHHHHHHCCCCCCCCCCCCHHEEEEEECCCCCCCHHHHHHHHCCCEEEEECCCCCE
TFANGAMRAATWLVEQDAGLYDMQQVLGLKA
EECCCCHHHHHEEEECCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA