| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is feaR [C]
Identifier: 167625017
GI number: 167625017
Start: 3787532
End: 3788542
Strand: Reverse
Name: feaR [C]
Synonym: Shal_3105
Alternate gene names: 167625017
Gene position: 3788542-3787532 (Counterclockwise)
Preceding gene: 167625020
Following gene: 167625016
Centisome position: 72.48
GC content: 41.84
Gene sequence:
>1011_bases ATGCCGTCGGATTCTAATAATGAAGCAATACCGCTTATTCAGCGACAAGATGTGGTATTTTTTGCAAGTTTGCTCAGAGG GTTAGATGGCAGTATTTATCCTATGTTGCAGCAGGCAAAGGTGCCAGTTGATCTGTATTCGAGTGAGAATAGCTATGATT ATCTGCCTGAAAATACGGTTAAAAACCTTATACAAGCCTTGGGAGAAAAGTTAGAGCACCGAGAGTTTATTCAGCTGGTT AGCAGCGCCTGTAAGAATATCTATATTCCCGGTTTTATTAGACGCCTGACTCAAAGGGGCTCTTTAAGAGAAGCACTGGA TGAGTTTGCAGAGCAATTAAAATCAAATTTGACCCATACTAAAGTGTATACCCAATTCACAGGGGGGCGTTGGTGGTTAG TGCGGGAAAAAGAGGGGGTGGATGAGGCATGGTTTACCCATGCAGAACTTTTTTCTGTTATTTTTATTTGTGAACTGTTA TCAGCGCTCACGGCTAATAAATGGCGTCCGAAACAAGTGGGGATTCAGTCTTCTGATGACGCAGTGTTTTCTACTTTACC GCAATTGACTCGAAGTCAGTTTTTTACCAATAGGCCAGTAACGGCTTTTTCTATCGAAACAATCTTAATGGCTGCACCTG TTAGTCATCCCTATATTTCGACTAAAGATCATGTTGCTGCAATCCCTTCATTAGATTGCTTTTTAGGAACTTTCAAGTTG GCAATTCAACCCTATCTGTCGATGGGAAAGTTACCAATCAAGACTGCGGCGCAAATTCTTCATTTAAATGTCAGAACATT GCAGCGGCGCTTAGCAAAAGAGAATGTTCAATATGGCGTTATTATTGAAGAGATGGTGCTTGAGCAAACCTTGGATCTGT TAAAGTGTCCTTCGTTAAAGATCACCTCAATTGCGATTCGGATGGGCTACTCTGACTCTGCACATTTTACCCGGGCTTTC AAGCGGCAAATGAATATGACGCCTACTCAATACCGTCGTCAATTCACTTAA
Upstream 100 bases:
>100_bases AACGTCAAGATGAGTGCTAGTGGTGTTATAGACAGGCTTTCGATATTGATTTATAAATGAAAATAGTACTTAGGGAGAAA TTATCACTTAGGAAGAAACT
Downstream 100 bases:
>100_bases TTCTGCGCTATTTAAGAAACAAATCATTTATCTTTAAACCTCCATTTTGTTACCTCTTGTCGCCAAATGGCTATTTATCA GTCTTGAATTAGTCCAAAAT
Product: AraC family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator AraC Family; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator; HTH-Type Transcriptional Regulator AraC Family; AraC/XylS Regulator Protein
Number of amino acids: Translated: 336; Mature: 335
Protein sequence:
>336_residues MPSDSNNEAIPLIQRQDVVFFASLLRGLDGSIYPMLQQAKVPVDLYSSENSYDYLPENTVKNLIQALGEKLEHREFIQLV SSACKNIYIPGFIRRLTQRGSLREALDEFAEQLKSNLTHTKVYTQFTGGRWWLVREKEGVDEAWFTHAELFSVIFICELL SALTANKWRPKQVGIQSSDDAVFSTLPQLTRSQFFTNRPVTAFSIETILMAAPVSHPYISTKDHVAAIPSLDCFLGTFKL AIQPYLSMGKLPIKTAAQILHLNVRTLQRRLAKENVQYGVIIEEMVLEQTLDLLKCPSLKITSIAIRMGYSDSAHFTRAF KRQMNMTPTQYRRQFT
Sequences:
>Translated_336_residues MPSDSNNEAIPLIQRQDVVFFASLLRGLDGSIYPMLQQAKVPVDLYSSENSYDYLPENTVKNLIQALGEKLEHREFIQLV SSACKNIYIPGFIRRLTQRGSLREALDEFAEQLKSNLTHTKVYTQFTGGRWWLVREKEGVDEAWFTHAELFSVIFICELL SALTANKWRPKQVGIQSSDDAVFSTLPQLTRSQFFTNRPVTAFSIETILMAAPVSHPYISTKDHVAAIPSLDCFLGTFKL AIQPYLSMGKLPIKTAAQILHLNVRTLQRRLAKENVQYGVIIEEMVLEQTLDLLKCPSLKITSIAIRMGYSDSAHFTRAF KRQMNMTPTQYRRQFT >Mature_335_residues PSDSNNEAIPLIQRQDVVFFASLLRGLDGSIYPMLQQAKVPVDLYSSENSYDYLPENTVKNLIQALGEKLEHREFIQLVS SACKNIYIPGFIRRLTQRGSLREALDEFAEQLKSNLTHTKVYTQFTGGRWWLVREKEGVDEAWFTHAELFSVIFICELLS ALTANKWRPKQVGIQSSDDAVFSTLPQLTRSQFFTNRPVTAFSIETILMAAPVSHPYISTKDHVAAIPSLDCFLGTFKLA IQPYLSMGKLPIKTAAQILHLNVRTLQRRLAKENVQYGVIIEEMVLEQTLDLLKCPSLKITSIAIRMGYSDSAHFTRAFK RQMNMTPTQYRRQFT
Specific function: Positive Regulator Of Tyna/Maoa And Feab/Pada, The Genes For 2-Phenylethylamine Catabolism. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38319; Mature: 38188
Theoretical pI: Translated: 9.04; Mature: 9.04
Prosite motif: PS01124 HTH_ARAC_FAMILY_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSDSNNEAIPLIQRQDVVFFASLLRGLDGSIYPMLQQAKVPVDLYSSENSYDYLPENTV CCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEECCCCCCCCCCHHHH KNLIQALGEKLEHREFIQLVSSACKNIYIPGFIRRLTQRGSLREALDEFAEQLKSNLTHT HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCHH KVYTQFTGGRWWLVREKEGVDEAWFTHAELFSVIFICELLSALTANKWRPKQVGIQSSDD EEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCH AVFSTLPQLTRSQFFTNRPVTAFSIETILMAAPVSHPYISTKDHVAAIPSLDCFLGTFKL HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHCCCHHHHHHHHHH AIQPYLSMGKLPIKTAAQILHLNVRTLQRRLAKENVQYGVIIEEMVLEQTLDLLKCPSLK HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCE ITSIAIRMGYSDSAHFTRAFKRQMNMTPTQYRRQFT EEEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHCCC >Mature Secondary Structure PSDSNNEAIPLIQRQDVVFFASLLRGLDGSIYPMLQQAKVPVDLYSSENSYDYLPENTV CCCCCCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEECCCCCCCCCCHHHH KNLIQALGEKLEHREFIQLVSSACKNIYIPGFIRRLTQRGSLREALDEFAEQLKSNLTHT HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCHH KVYTQFTGGRWWLVREKEGVDEAWFTHAELFSVIFICELLSALTANKWRPKQVGIQSSDD EEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCH AVFSTLPQLTRSQFFTNRPVTAFSIETILMAAPVSHPYISTKDHVAAIPSLDCFLGTFKL HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHCCCHHHHHHHHHH AIQPYLSMGKLPIKTAAQILHLNVRTLQRRLAKENVQYGVIIEEMVLEQTLDLLKCPSLK HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCE ITSIAIRMGYSDSAHFTRAFKRQMNMTPTQYRRQFT EEEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA