| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
Click here to switch to the map view.
The map label for this gene is 167624841
Identifier: 167624841
GI number: 167624841
Start: 3558463
End: 3560487
Strand: Reverse
Name: 167624841
Synonym: Shal_2927
Alternate gene names: NA
Gene position: 3560487-3558463 (Counterclockwise)
Preceding gene: 167624842
Following gene: 167624840
Centisome position: 68.12
GC content: 47.65
Gene sequence:
>2025_bases ATGCGTTCAATTAAATCTTTTTCATTAAATCTGATCACTCTTGCGCTATTAGGCACGTGCAGTAGCGCAATGGCGGCCAA CTTCGGTATCCAAAACGCGAACACGGCAAATATCAAAACCGAGAGCTATCAATGTAAGCGTTGTGTCGAGCCTCAAGGTT ACACTGGCAGCGTTGGTGTCAGTGTCGGCGCTATCGATGCCGCTGACAACTATGCGATAAACCAGTTTGGTACGGGTAAA GATGGCGCGATTGCAGGTATCAATAGCGACCTTACCTATCAGCAAAATGGTTATAAAGCTAACGTTCAAGCCCACCAATT GGGTATGGATAATGGCTTTGTGAGCATGCAAGCGGGTAAGAGCGGTCATTACAAGCTGGATCTGGATTTTCAGACCATTA CTACTAACCAAGGCAGCAATGCGGCCACGAATCTTTGGCAAAACGATGGCATGCTGACACCGAGTGAGCAGACTCGCGTA TTGGATCTTGAGCTACAGAGACAGCGCAGCGGCATCGGTTTCGAGTATGACTTTTCAGAGGTGATGGGGCTGGGTCTAAA CAGTTACGCCCGTTTTGAACGTGAAGATAAAACTGGTCACCGTAGCGCTAGCTTAACGAGCCCACGTCCAACAAACTTTG CTGAAGCTGTCGATGAAACCACAGATAATTTCAGCGCTGGCGTGGTACTTGATGGCGCTAACTGGTTGTCAGAGCTGAGC TACAACGGCTCACGTTATGACAATAATATGGGCGATTTAAGCCTGCCATATGCCTATGACGTATACAGCGCGACACCAGA TAACCAAGCACATCAAGTGTCGCTGTCGGGTCAGTACCGCCTGGACTCTAGTGTATTTAGTGGTCGTGTGGTGACCGGTC GTATGATCCAAGACCAAGACCTTATCCAGATGAGCGGCAACCCAATTCAAAACTGGGACGGCCAGGTTGATACCTTAAGT TCACACCTTGCAGCCAGTACGCGAGTCAGTAATCGCTTACGACTAGGCGCCAGCTATGACTATAGCAAGCGTGATAACCG CTCATCGGCATTTGATTTTGCTCAGTATGAATTCAACTCTATGTCAGGTGCGTTTAAACAAAACACACCGATGGATATCG AGCGTCAGACTTTCAAAACTAACGCTAGCTACCGCATTGCCAGTGGTTACCGCCTACAAGCGGGTTATGACTATAAGCAA GTAGAGCGCAGCTATGGTGAGCGTGAACAGACCCGTGATAACGAGTTTTGGAGCAAGCTAAGCATTCGCGCTATCGATAA GCTGACCCTAGATTTTGGTGTGAGCTATGGCGAGCGCGGTGGCAGTGACTACCAAGCTAATGAGCTCACTAGCGACGAGA CTGAGTCGTTAATGCGCAAATACAATCTTGCCGATCGTAAGCGCAGTGAAGTTAACGCAAGAGCGAGCTACATGCCGCTT GAGTGGTTGAGCTTTGATATTAGCACTTACTACGCCAATGATGACTATGATGCCACGGTAATCGGTCTAACTCAGGCAAA AGACTACGGCTATGACATCAATGTTCATGCCCAGCTTTCAGCGCCGCTATCTGTGTATGCCTTTGCGGGCCAGCAGTGGA TTGACTCAGATCAAAGCGGTGACCAAGCCTCAGTTTGGCACACAGAGATTAATGATGAGTTTATCAACTTAGGCCTAGGT GCAACTTATTCAGGCTTAATGGATGGCAGATTGATTTTAGGTAGTGATTACCTATTTGCTAATTCATCTAGCAATACTGG TGTCAATGGTTACAACTCTGGCAGCGCCAATATCAACAACTATGGCAGCTATTACTCGTACAACCACAGCGTGAGCTTAT ACGGGCAATATCTGATCTCAGAGCAAATGGCAGTCAAGTTGGCTTACCAGTTTGAACGTTATTTTGATACCGACAGCGCG ATGGTCACTCCCGATAGCATTCCTGGTTTAATCACCTTGGGTGACCTGAACCACAATTACAACGCCCATCAACTGATGTT GACCTTCAGCTACAAGCTGAAATAG
Upstream 100 bases:
>100_bases TCAGTGCTGGTAAGAGTTGCCTAAATTGCCACAGCAAGATCCATGGTTCTAACCATCCTGCTGGCAGCAACTTTGCCCGT TAAGTCTAGGAGTGACTACT
Downstream 100 bases:
>100_bases GTCGAGTCAGTCACTAATAAGTTTGAGGAAAACAAGATTATGGAACGTAGAAGTTTCTTAAAAATGAGTGCTGCGCTGGG CTGCGCAGCAACAGTTACCG
Product: outer membrane protein
Products: NA
Alternate protein names: Outer Membrane Protein MtrB; Outer Membrane Protein MtrB
Number of amino acids: Translated: 674; Mature: 674
Protein sequence:
>674_residues MRSIKSFSLNLITLALLGTCSSAMAANFGIQNANTANIKTESYQCKRCVEPQGYTGSVGVSVGAIDAADNYAINQFGTGK DGAIAGINSDLTYQQNGYKANVQAHQLGMDNGFVSMQAGKSGHYKLDLDFQTITTNQGSNAATNLWQNDGMLTPSEQTRV LDLELQRQRSGIGFEYDFSEVMGLGLNSYARFEREDKTGHRSASLTSPRPTNFAEAVDETTDNFSAGVVLDGANWLSELS YNGSRYDNNMGDLSLPYAYDVYSATPDNQAHQVSLSGQYRLDSSVFSGRVVTGRMIQDQDLIQMSGNPIQNWDGQVDTLS SHLAASTRVSNRLRLGASYDYSKRDNRSSAFDFAQYEFNSMSGAFKQNTPMDIERQTFKTNASYRIASGYRLQAGYDYKQ VERSYGEREQTRDNEFWSKLSIRAIDKLTLDFGVSYGERGGSDYQANELTSDETESLMRKYNLADRKRSEVNARASYMPL EWLSFDISTYYANDDYDATVIGLTQAKDYGYDINVHAQLSAPLSVYAFAGQQWIDSDQSGDQASVWHTEINDEFINLGLG ATYSGLMDGRLILGSDYLFANSSSNTGVNGYNSGSANINNYGSYYSYNHSVSLYGQYLISEQMAVKLAYQFERYFDTDSA MVTPDSIPGLITLGDLNHNYNAHQLMLTFSYKLK
Sequences:
>Translated_674_residues MRSIKSFSLNLITLALLGTCSSAMAANFGIQNANTANIKTESYQCKRCVEPQGYTGSVGVSVGAIDAADNYAINQFGTGK DGAIAGINSDLTYQQNGYKANVQAHQLGMDNGFVSMQAGKSGHYKLDLDFQTITTNQGSNAATNLWQNDGMLTPSEQTRV LDLELQRQRSGIGFEYDFSEVMGLGLNSYARFEREDKTGHRSASLTSPRPTNFAEAVDETTDNFSAGVVLDGANWLSELS YNGSRYDNNMGDLSLPYAYDVYSATPDNQAHQVSLSGQYRLDSSVFSGRVVTGRMIQDQDLIQMSGNPIQNWDGQVDTLS SHLAASTRVSNRLRLGASYDYSKRDNRSSAFDFAQYEFNSMSGAFKQNTPMDIERQTFKTNASYRIASGYRLQAGYDYKQ VERSYGEREQTRDNEFWSKLSIRAIDKLTLDFGVSYGERGGSDYQANELTSDETESLMRKYNLADRKRSEVNARASYMPL EWLSFDISTYYANDDYDATVIGLTQAKDYGYDINVHAQLSAPLSVYAFAGQQWIDSDQSGDQASVWHTEINDEFINLGLG ATYSGLMDGRLILGSDYLFANSSSNTGVNGYNSGSANINNYGSYYSYNHSVSLYGQYLISEQMAVKLAYQFERYFDTDSA MVTPDSIPGLITLGDLNHNYNAHQLMLTFSYKLK >Mature_674_residues MRSIKSFSLNLITLALLGTCSSAMAANFGIQNANTANIKTESYQCKRCVEPQGYTGSVGVSVGAIDAADNYAINQFGTGK DGAIAGINSDLTYQQNGYKANVQAHQLGMDNGFVSMQAGKSGHYKLDLDFQTITTNQGSNAATNLWQNDGMLTPSEQTRV LDLELQRQRSGIGFEYDFSEVMGLGLNSYARFEREDKTGHRSASLTSPRPTNFAEAVDETTDNFSAGVVLDGANWLSELS YNGSRYDNNMGDLSLPYAYDVYSATPDNQAHQVSLSGQYRLDSSVFSGRVVTGRMIQDQDLIQMSGNPIQNWDGQVDTLS SHLAASTRVSNRLRLGASYDYSKRDNRSSAFDFAQYEFNSMSGAFKQNTPMDIERQTFKTNASYRIASGYRLQAGYDYKQ VERSYGEREQTRDNEFWSKLSIRAIDKLTLDFGVSYGERGGSDYQANELTSDETESLMRKYNLADRKRSEVNARASYMPL EWLSFDISTYYANDDYDATVIGLTQAKDYGYDINVHAQLSAPLSVYAFAGQQWIDSDQSGDQASVWHTEINDEFINLGLG ATYSGLMDGRLILGSDYLFANSSSNTGVNGYNSGSANINNYGSYYSYNHSVSLYGQYLISEQMAVKLAYQFERYFDTDSA MVTPDSIPGLITLGDLNHNYNAHQLMLTFSYKLK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 74811; Mature: 74811
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSIKSFSLNLITLALLGTCSSAMAANFGIQNANTANIKTESYQCKRCVEPQGYTGSVGV CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHCCCCCCCCCCCCE SVGAIDAADNYAINQFGTGKDGAIAGINSDLTYQQNGYKANVQAHQLGMDNGFVSMQAGK EEEEEECCCCEEECCCCCCCCCEEEECCCCCEECCCCEECCCEEEEECCCCCEEEEECCC SGHYKLDLDFQTITTNQGSNAATNLWQNDGMLTPSEQTRVLDLELQRQRSGIGFEYDFSE CCCEEEEEEEEEEECCCCCCHHHHEECCCCEECCCCCCEEEEEEEHHHHCCCCEEECHHH VMGLGLNSYARFEREDKTGHRSASLTSPRPTNFAEAVDETTDNFSAGVVLDGANWLSELS HHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEECHHHHHHHC YNGSRYDNNMGDLSLPYAYDVYSATPDNQAHQVSLSGQYRLDSSVFSGRVVTGRMIQDQD CCCCCCCCCCCCEECCEEEEEEECCCCCCCEEEEECCCEEECCHHHCCEEEEEEEECCCC LIQMSGNPIQNWDGQVDTLSSHLAASTRVSNRLRLGASYDYSKRDNRSSAFDFAQYEFNS HHEECCCCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCEEHHEECCC MSGAFKQNTPMDIERQTFKTNASYRIASGYRLQAGYDYKQVERSYGEREQTRDNEFWSKL CCCCCCCCCCCCCCHHHEECCCCEEEECCEEEECCCCHHHHHHHHCCHHHCCCHHHHHHH SIRAIDKLTLDFGVSYGERGGSDYQANELTSDETESLMRKYNLADRKRSEVNARASYMPL HHHHHEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCH EWLSFDISTYYANDDYDATVIGLTQAKDYGYDINVHAQLSAPLSVYAFAGQQWIDSDQSG HHEEEEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEEECCCEEEEEECCCHHCCCCCCC DQASVWHTEINDEFINLGLGATYSGLMDGRLILGSDYLFANSSSNTGVNGYNSGSANINN CCCEEEEEECCCEEEEECCCCCHHCCCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCC YGSYYSYNHSVSLYGQYLISEQMAVKLAYQFERYFDTDSAMVTPDSIPGLITLGDLNHNY CCCEEEECCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCEEEEECCCCCC NAHQLMLTFSYKLK CCEEEEEEEEEECC >Mature Secondary Structure MRSIKSFSLNLITLALLGTCSSAMAANFGIQNANTANIKTESYQCKRCVEPQGYTGSVGV CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHCCCCCCCCCCCCE SVGAIDAADNYAINQFGTGKDGAIAGINSDLTYQQNGYKANVQAHQLGMDNGFVSMQAGK EEEEEECCCCEEECCCCCCCCCEEEECCCCCEECCCCEECCCEEEEECCCCCEEEEECCC SGHYKLDLDFQTITTNQGSNAATNLWQNDGMLTPSEQTRVLDLELQRQRSGIGFEYDFSE CCCEEEEEEEEEEECCCCCCHHHHEECCCCEECCCCCCEEEEEEEHHHHCCCCEEECHHH VMGLGLNSYARFEREDKTGHRSASLTSPRPTNFAEAVDETTDNFSAGVVLDGANWLSELS HHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCEEEECHHHHHHHC YNGSRYDNNMGDLSLPYAYDVYSATPDNQAHQVSLSGQYRLDSSVFSGRVVTGRMIQDQD CCCCCCCCCCCCEECCEEEEEEECCCCCCCEEEEECCCEEECCHHHCCEEEEEEEECCCC LIQMSGNPIQNWDGQVDTLSSHLAASTRVSNRLRLGASYDYSKRDNRSSAFDFAQYEFNS HHEECCCCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCEEHHEECCC MSGAFKQNTPMDIERQTFKTNASYRIASGYRLQAGYDYKQVERSYGEREQTRDNEFWSKL CCCCCCCCCCCCCCHHHEECCCCEEEECCEEEECCCCHHHHHHHHCCHHHCCCHHHHHHH SIRAIDKLTLDFGVSYGERGGSDYQANELTSDETESLMRKYNLADRKRSEVNARASYMPL HHHHHEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCH EWLSFDISTYYANDDYDATVIGLTQAKDYGYDINVHAQLSAPLSVYAFAGQQWIDSDQSG HHEEEEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEEECCCEEEEEECCCHHCCCCCCC DQASVWHTEINDEFINLGLGATYSGLMDGRLILGSDYLFANSSSNTGVNGYNSGSANINN CCCEEEEEECCCEEEEECCCCCHHCCCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCC YGSYYSYNHSVSLYGQYLISEQMAVKLAYQFERYFDTDSAMVTPDSIPGLITLGDLNHNY CCCEEEECCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCEEEEECCCCCC NAHQLMLTFSYKLK CCEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA