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The map label for this gene is 167624638

Identifier: 167624638

GI number: 167624638

Start: 3298459

End: 3299706

Strand: Reverse

Name: 167624638

Synonym: Shal_2720

Alternate gene names: NA

Gene position: 3299706-3298459 (Counterclockwise)

Preceding gene: 167624639

Following gene: 167624636

Centisome position: 63.13

GC content: 43.11

Gene sequence:

>1248_bases
ATGCGTAAAGTTAATTCGATTGCTGCTGCTTTATTACTTTGTTTAGGTGGAAGTATCGCGGTTGCTCCTGTTGCTTATGC
AGCAGAGAAGTGCCCGATTGAGAAGCGTAAATCGAAAGCTGTTGGCCAAAGCGCCTCTAAAAAAGTACAGAAGTCTTTTC
AGGCATATACCGAAGGTAATGTTGATGAGGCTATTGCGATTCTTTTAGAAGCCAATGCAAAGAATGACTTCGATAAGGCC
TATATCGCCCGTATGCTAGGTAACTTCTATGCGGAAAAAGGAGATATGGCTACGGCGATTAAGTACCTTAAATCTGCTGT
AGATGCTGATATTCTGGGCGGCGTTGACCACGCGCAAACTCTAAGACTCTATGCTGATCTCCTGATTGGAGAGAAGCAGT
TCAAAGAGTCTATCCCTATGTACTACAAGTGGATGGAGTTTACCTGTAAAGAAGATCCGCAAGTGTACCGTCGTATCGGT
ATTGCATATTCTGAGCAGAAGCAGTGGGATAAGGTGCTTGAGGTTGCTGACCAAGGTTTAGCCATCACGGAAAAGCCAGA
TAAAGGCCTATATCAGATGAAGCTAACTGCTTACTTCAATCAAAAGAAGTATAAGGAAGCGGTTAATGTTCTTGAAGTCA
TGGTGCCATTATTTCCGGACGACAAGCGCCTCTGGGTTCAGTTAGCTCAGTTCTATTTGATGACAGAGGACTATACAAAG
TCACTAGCGACTTATGACTTGGCTTATATGAATGGATTTTTGGAAACGGCGGGTAATATTACTCGTTTGACCCAGCTGTT
AGCACAAAATGGTTCGCCATACCGTGCAGCGCAGATCTATTCTAAGCATATGAAGTCAGGAATGATTAAGGAAGATGAAA
AGACCTTAACTATCCTCGCTGGTTTTTACCATAATGCTAAGGAGCTGAAACAAGCTGCTAACACTTACGGTAAAGCGGCT
GCAGTTAATAATGCTGGCAAGCTGTACCTGAGACAGGGTCGTATCCTAACCCTAGATGGTGAGCATAAGTCTGCAATCAC
TGCGCTGAAAAAGGCTTTGGATGCTGGAATTAATAATCCAGGTGAAGCTCAGTTCGAACTTGCTTTAGCTTATCTCAGCT
TAAAGCAGTACAAGTCAGCATATAAATATGCCAAGCTTGCTGCTAATGATAAGAAGACTGCGCGTTCAGCTAAGAGCTAT
ATCGCTTACATTAAAGAAAAAGCGCGCGTTCATAACGTGACCCTTTAA

Upstream 100 bases:

>100_bases
AGTGGAAGTACAAGCCAAAGATTGTTGATGGCAAAGCCCTTAAACAACCTGGTATGACGGTCCAACTTGACTTCACTCTA
GATAAAGGAGGCAGATAATT

Downstream 100 bases:

>100_bases
CTTAATGAGTTGTTTAAAAGCCCCTTTTAAGGGGCTTTTTTATGTCTTAAATTTGGTGAGCAATTCTTTGTCGCTAGAGA
TGAATAAGCCTATGTTCAAC

Product: tetratricopeptide domain-containing protein

Products: NA

Alternate protein names: TPR Domain-Containing Protein; Tetratricopeptide Domain-Containing Protein; Tetratricopeptide Repeat Domain Protein; TPR Domain Protein; Tetratricopeptide Domain Protein; PAS/PAC Sensor Protein; TPR Domain Protein Component Of nB System; TPR Repeat Protein; Tetratricopeptide Region; Tetratricopeptide Repeat-Containing Protein; Short Chain Dehydrogenase

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MRKVNSIAAALLLCLGGSIAVAPVAYAAEKCPIEKRKSKAVGQSASKKVQKSFQAYTEGNVDEAIAILLEANAKNDFDKA
YIARMLGNFYAEKGDMATAIKYLKSAVDADILGGVDHAQTLRLYADLLIGEKQFKESIPMYYKWMEFTCKEDPQVYRRIG
IAYSEQKQWDKVLEVADQGLAITEKPDKGLYQMKLTAYFNQKKYKEAVNVLEVMVPLFPDDKRLWVQLAQFYLMTEDYTK
SLATYDLAYMNGFLETAGNITRLTQLLAQNGSPYRAAQIYSKHMKSGMIKEDEKTLTILAGFYHNAKELKQAANTYGKAA
AVNNAGKLYLRQGRILTLDGEHKSAITALKKALDAGINNPGEAQFELALAYLSLKQYKSAYKYAKLAANDKKTARSAKSY
IAYIKEKARVHNVTL

Sequences:

>Translated_415_residues
MRKVNSIAAALLLCLGGSIAVAPVAYAAEKCPIEKRKSKAVGQSASKKVQKSFQAYTEGNVDEAIAILLEANAKNDFDKA
YIARMLGNFYAEKGDMATAIKYLKSAVDADILGGVDHAQTLRLYADLLIGEKQFKESIPMYYKWMEFTCKEDPQVYRRIG
IAYSEQKQWDKVLEVADQGLAITEKPDKGLYQMKLTAYFNQKKYKEAVNVLEVMVPLFPDDKRLWVQLAQFYLMTEDYTK
SLATYDLAYMNGFLETAGNITRLTQLLAQNGSPYRAAQIYSKHMKSGMIKEDEKTLTILAGFYHNAKELKQAANTYGKAA
AVNNAGKLYLRQGRILTLDGEHKSAITALKKALDAGINNPGEAQFELALAYLSLKQYKSAYKYAKLAANDKKTARSAKSY
IAYIKEKARVHNVTL
>Mature_415_residues
MRKVNSIAAALLLCLGGSIAVAPVAYAAEKCPIEKRKSKAVGQSASKKVQKSFQAYTEGNVDEAIAILLEANAKNDFDKA
YIARMLGNFYAEKGDMATAIKYLKSAVDADILGGVDHAQTLRLYADLLIGEKQFKESIPMYYKWMEFTCKEDPQVYRRIG
IAYSEQKQWDKVLEVADQGLAITEKPDKGLYQMKLTAYFNQKKYKEAVNVLEVMVPLFPDDKRLWVQLAQFYLMTEDYTK
SLATYDLAYMNGFLETAGNITRLTQLLAQNGSPYRAAQIYSKHMKSGMIKEDEKTLTILAGFYHNAKELKQAANTYGKAA
AVNNAGKLYLRQGRILTLDGEHKSAITALKKALDAGINNPGEAQFELALAYLSLKQYKSAYKYAKLAANDKKTARSAKSY
IAYIKEKARVHNVTL

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46382; Mature: 46382

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKVNSIAAALLLCLGGSIAVAPVAYAAEKCPIEKRKSKAVGQSASKKVQKSFQAYTEGN
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHCCCC
VDEAIAILLEANAKNDFDKAYIARMLGNFYAEKGDMATAIKYLKSAVDADILGGVDHAQT
HHHHHHHHEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
LRLYADLLIGEKQFKESIPMYYKWMEFTCKEDPQVYRRIGIAYSEQKQWDKVLEVADQGL
HHHHHHHHHCHHHHHHCCCHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCC
AITEKPDKGLYQMKLTAYFNQKKYKEAVNVLEVMVPLFPDDKRLWVQLAQFYLMTEDYTK
EEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
SLATYDLAYMNGFLETAGNITRLTQLLAQNGSPYRAAQIYSKHMKSGMIKEDEKTLTILA
HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEHH
GFYHNAKELKQAANTYGKAAAVNNAGKLYLRQGRILTLDGEHKSAITALKKALDAGINNP
HHHCCHHHHHHHHHHHCCHHHCCCCCCEEEECCEEEEECCCHHHHHHHHHHHHHCCCCCC
GEAQFELALAYLSLKQYKSAYKYAKLAANDKKTARSAKSYIAYIKEKARVHNVTL
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRKVNSIAAALLLCLGGSIAVAPVAYAAEKCPIEKRKSKAVGQSASKKVQKSFQAYTEGN
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHCCCC
VDEAIAILLEANAKNDFDKAYIARMLGNFYAEKGDMATAIKYLKSAVDADILGGVDHAQT
HHHHHHHHEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
LRLYADLLIGEKQFKESIPMYYKWMEFTCKEDPQVYRRIGIAYSEQKQWDKVLEVADQGL
HHHHHHHHHCHHHHHHCCCHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCC
AITEKPDKGLYQMKLTAYFNQKKYKEAVNVLEVMVPLFPDDKRLWVQLAQFYLMTEDYTK
EEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
SLATYDLAYMNGFLETAGNITRLTQLLAQNGSPYRAAQIYSKHMKSGMIKEDEKTLTILA
HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEHH
GFYHNAKELKQAANTYGKAAAVNNAGKLYLRQGRILTLDGEHKSAITALKKALDAGINNP
HHHCCHHHHHHHHHHHCCHHHCCCCCCEEEECCEEEEECCCHHHHHHHHHHHHHCCCCCC
GEAQFELALAYLSLKQYKSAYKYAKLAANDKKTARSAKSYIAYIKEKARVHNVTL
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA