| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624636
Identifier: 167624636
GI number: 167624636
Start: 3295970
End: 3297802
Strand: Reverse
Name: 167624636
Synonym: Shal_2718
Alternate gene names: NA
Gene position: 3297802-3295970 (Counterclockwise)
Preceding gene: 167624638
Following gene: 167624635
Centisome position: 63.09
GC content: 44.95
Gene sequence:
>1833_bases ATGAGGAAGGCGGTACTGGCGTTGTCTATTGGCGCGATTTTAGGGTTAGCAGGCTGTGGTGAAAATGATAATAAGCAAAT CCAGCAAGCAGAGAAAACTGCGCAACCTACAGCTGAACAATCCGCTCAAATGCAATCTGCAGAGCAAGTCTATCTGTTGT TAGTGGATAATTACTTTAAGGATTTATTGCAGCTGGAGCCTATTTACGCCACATTTGTTGGCGTTAATGACTACAACGAT CAATTTGGCGATGGTTTATCTGATGCATACTTAAAGCAGCGTCACGATCTCAACACGCGCTATTTAAAAGAGGTCAAAAA AATAGATCGTAGTCAGCTATCAAACGAGTTAAAGCTCAGCTATGACATGTTTAACTATGATCGTAATGTCGCCTTAGCGG ATGAGACATTCCCTAATCACTTTATGCCAATGAACCAGTTTTATAGCACTGTGATTAGCATGGTGCAACTTGGCAGTGGT GAAAGCGCCCAACCATTTAACACTGTTGAAGATTACCGTAACTGGGAGAAACGTCTACAAGGCTTTATTGAGTGGCTTAA GCTCGCACAAGTTCGTATGGATGAAGGTGTCCAGAGCAAAGTGGTACTGCCGCGTGTGCTTGTTGAACGTATTATTCCTC AGTTAAGTGCTCAGCTTGTCGATAACATTAGCGACAGCTTGTTCTATACCCCGATCACCTTGATGCCTGAGTCATTCTCA GATGCAGACAAACAAGCGCTGACTCAAGAGTATACGGCGTTAATTGGTGAGCAGCTGCTGCCAGAGCTGACATCGCTTCG CGATTACTTTCAAAATACTTACCTGAAGTCATCCCGTGCAACTGATGGTTGGTGGGGGCTACCAAACGGTAAAGTTTGGT ACCAGCATCTTGCTAATTCGCACACTACAACGACCATGCCTGTCGATGAAATCCATAAAATTGGCCTAGATGAAGTTGCC CGTATTTTATCTGAAATGGACAAAGTTCGAGTTCAAGTTGGTTTTGAAGGCGACCTAAGTGACTTTTTCGCATCATTGTC ATCAGAGCCACAGTACTTCTTTACAGACCGCCAAGGCTTAATTGATGGCTACATGGTTCTTAAAGATAAAATCAATCTAG AGTTACCTAAGTACTTCAATGTCATGCCAAAAGCCGATTATGTGGTTAAGCCTGTAGAAAGCTTTAGAGAGCAATCGGCA GCAGGTGCCTCATACGATGCTCCAGCGGTTGATGGCTCTCGTCCGGGGGTATTCTATATTAATACCTATAACCTTAAGGC ACAGCCAAAGTGGGGCATGACGACGCTGTCTCTGCACGAGGCTGCGCCAGGTCATCACTTCCAAATCGCGATTAAGCAAG AGCTATCTGGTGTGCCTGAGTTCCAACGCTTTGGAAACTACACTGCATTTGAAGAGGGCTGGGCACTATACGCTGAGTAC TTAGGCATTGAGATGGGCCTATTTAACGACCCATATCAATACTTTGGTAAGCTCTCAGATGAGATGCTGCGTGCTATGCG CTTAGTGGTCGATACGGGTCTTCATGCTAAAGGTTGGACTCGTGAGCAAGCGATTCAGTATATGAAAGACAATTCGCCAA TGGCGGAATCTGACATTATCGCAGAAGTTGAGCGTTATATGGCGATTCCTGGCCAAGCATTGAGCTACAAAGTAGGCCAG TTAAAGATTTTGTCGCTGCGTGCACAAGCGGAAAAAGAGCTGGGCGAACAGTTTGATTTAAAAGCGTATCACGACCAAAT CCTCACTTCAGGCTCGTTGCCGATGGAAGTGATGGAGTTAAAAGTGAACGATTGGATAGCTGCGCAAAAGTAA
Upstream 100 bases:
>100_bases AGAATTACTGAATGAATAAATCATTAAAAGCTCCTTATGTGCTTCTGGTTTAAGTATAGAAAAGATAGAACATAGAACGA TAAATAAAAGGAATAATAAA
Downstream 100 bases:
>100_bases GCGAGCTAATCAGTAAAAACCCAGTTGGGATGTACCGTATTTCCAAGTCGTTTGGCTATAAATAATGGTATATACTGGCT GGGTTTATTTTTGCCTAACA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 610; Mature: 610
Protein sequence:
>610_residues MRKAVLALSIGAILGLAGCGENDNKQIQQAEKTAQPTAEQSAQMQSAEQVYLLLVDNYFKDLLQLEPIYATFVGVNDYND QFGDGLSDAYLKQRHDLNTRYLKEVKKIDRSQLSNELKLSYDMFNYDRNVALADETFPNHFMPMNQFYSTVISMVQLGSG ESAQPFNTVEDYRNWEKRLQGFIEWLKLAQVRMDEGVQSKVVLPRVLVERIIPQLSAQLVDNISDSLFYTPITLMPESFS DADKQALTQEYTALIGEQLLPELTSLRDYFQNTYLKSSRATDGWWGLPNGKVWYQHLANSHTTTTMPVDEIHKIGLDEVA RILSEMDKVRVQVGFEGDLSDFFASLSSEPQYFFTDRQGLIDGYMVLKDKINLELPKYFNVMPKADYVVKPVESFREQSA AGASYDAPAVDGSRPGVFYINTYNLKAQPKWGMTTLSLHEAAPGHHFQIAIKQELSGVPEFQRFGNYTAFEEGWALYAEY LGIEMGLFNDPYQYFGKLSDEMLRAMRLVVDTGLHAKGWTREQAIQYMKDNSPMAESDIIAEVERYMAIPGQALSYKVGQ LKILSLRAQAEKELGEQFDLKAYHDQILTSGSLPMEVMELKVNDWIAAQK
Sequences:
>Translated_610_residues MRKAVLALSIGAILGLAGCGENDNKQIQQAEKTAQPTAEQSAQMQSAEQVYLLLVDNYFKDLLQLEPIYATFVGVNDYND QFGDGLSDAYLKQRHDLNTRYLKEVKKIDRSQLSNELKLSYDMFNYDRNVALADETFPNHFMPMNQFYSTVISMVQLGSG ESAQPFNTVEDYRNWEKRLQGFIEWLKLAQVRMDEGVQSKVVLPRVLVERIIPQLSAQLVDNISDSLFYTPITLMPESFS DADKQALTQEYTALIGEQLLPELTSLRDYFQNTYLKSSRATDGWWGLPNGKVWYQHLANSHTTTTMPVDEIHKIGLDEVA RILSEMDKVRVQVGFEGDLSDFFASLSSEPQYFFTDRQGLIDGYMVLKDKINLELPKYFNVMPKADYVVKPVESFREQSA AGASYDAPAVDGSRPGVFYINTYNLKAQPKWGMTTLSLHEAAPGHHFQIAIKQELSGVPEFQRFGNYTAFEEGWALYAEY LGIEMGLFNDPYQYFGKLSDEMLRAMRLVVDTGLHAKGWTREQAIQYMKDNSPMAESDIIAEVERYMAIPGQALSYKVGQ LKILSLRAQAEKELGEQFDLKAYHDQILTSGSLPMEVMELKVNDWIAAQK >Mature_610_residues MRKAVLALSIGAILGLAGCGENDNKQIQQAEKTAQPTAEQSAQMQSAEQVYLLLVDNYFKDLLQLEPIYATFVGVNDYND QFGDGLSDAYLKQRHDLNTRYLKEVKKIDRSQLSNELKLSYDMFNYDRNVALADETFPNHFMPMNQFYSTVISMVQLGSG ESAQPFNTVEDYRNWEKRLQGFIEWLKLAQVRMDEGVQSKVVLPRVLVERIIPQLSAQLVDNISDSLFYTPITLMPESFS DADKQALTQEYTALIGEQLLPELTSLRDYFQNTYLKSSRATDGWWGLPNGKVWYQHLANSHTTTTMPVDEIHKIGLDEVA RILSEMDKVRVQVGFEGDLSDFFASLSSEPQYFFTDRQGLIDGYMVLKDKINLELPKYFNVMPKADYVVKPVESFREQSA AGASYDAPAVDGSRPGVFYINTYNLKAQPKWGMTTLSLHEAAPGHHFQIAIKQELSGVPEFQRFGNYTAFEEGWALYAEY LGIEMGLFNDPYQYFGKLSDEMLRAMRLVVDTGLHAKGWTREQAIQYMKDNSPMAESDIIAEVERYMAIPGQALSYKVGQ LKILSLRAQAEKELGEQFDLKAYHDQILTSGSLPMEVMELKVNDWIAAQK
Specific function: Unknown
COG id: COG4805
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69348; Mature: 69348
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKAVLALSIGAILGLAGCGENDNKQIQQAEKTAQPTAEQSAQMQSAEQVYLLLVDNYFK CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHEEEHHHHHHHH DLLQLEPIYATFVGVNDYNDQFGDGLSDAYLKQRHDLNTRYLKEVKKIDRSQLSNELKLS HHHHCCCHHEEEEECCCCCHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHEEE YDMFNYDRNVALADETFPNHFMPMNQFYSTVISMVQLGSGESAQPFNTVEDYRNWEKRLQ EHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH GFIEWLKLAQVRMDEGVQSKVVLPRVLVERIIPQLSAQLVDNISDSLFYTPITLMPESFS HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHEECCCEECCCCCC DADKQALTQEYTALIGEQLLPELTSLRDYFQNTYLKSSRATDGWWGLPNGKVWYQHLANS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCC HTTTTMPVDEIHKIGLDEVARILSEMDKVRVQVGFEGDLSDFFASLSSEPQYFFTDRQGL CCCCCCCHHHHHHCCHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHCCCCCEEECCCCCC IDGYMVLKDKINLELPKYFNVMPKADYVVKPVESFREQSAAGASYDAPAVDGSRPGVFYI HHHHHEEECCCCEECCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE NTYNLKAQPKWGMTTLSLHEAAPGHHFQIAIKQELSGVPEFQRFGNYTAFEEGWALYAEY EEEEEEECCCCCCEEEEECCCCCCCEEEEEEHHHHCCCCHHHHCCCCCCHHHHHHHHHHH LGIEMGLFNDPYQYFGKLSDEMLRAMRLVVDTGLHAKGWTREQAIQYMKDNSPMAESDII HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHH AEVERYMAIPGQALSYKVGQLKILSLRAQAEKELGEQFDLKAYHDQILTSGSLPMEVMEL HHHHHHHCCCCCHHEEECCCEEEEHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHE KVNDWIAAQK EHHHHHCCCC >Mature Secondary Structure MRKAVLALSIGAILGLAGCGENDNKQIQQAEKTAQPTAEQSAQMQSAEQVYLLLVDNYFK CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHEEEHHHHHHHH DLLQLEPIYATFVGVNDYNDQFGDGLSDAYLKQRHDLNTRYLKEVKKIDRSQLSNELKLS HHHHCCCHHEEEEECCCCCHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHEEE YDMFNYDRNVALADETFPNHFMPMNQFYSTVISMVQLGSGESAQPFNTVEDYRNWEKRLQ EHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH GFIEWLKLAQVRMDEGVQSKVVLPRVLVERIIPQLSAQLVDNISDSLFYTPITLMPESFS HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHEECCCEECCCCCC DADKQALTQEYTALIGEQLLPELTSLRDYFQNTYLKSSRATDGWWGLPNGKVWYQHLANS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCC HTTTTMPVDEIHKIGLDEVARILSEMDKVRVQVGFEGDLSDFFASLSSEPQYFFTDRQGL CCCCCCCHHHHHHCCHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHCCCCCEEECCCCCC IDGYMVLKDKINLELPKYFNVMPKADYVVKPVESFREQSAAGASYDAPAVDGSRPGVFYI HHHHHEEECCCCEECCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE NTYNLKAQPKWGMTTLSLHEAAPGHHFQIAIKQELSGVPEFQRFGNYTAFEEGWALYAEY EEEEEEECCCCCCEEEEECCCCCCCEEEEEEHHHHCCCCHHHHCCCCCCHHHHHHHHHHH LGIEMGLFNDPYQYFGKLSDEMLRAMRLVVDTGLHAKGWTREQAIQYMKDNSPMAESDII HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHH AEVERYMAIPGQALSYKVGQLKILSLRAQAEKELGEQFDLKAYHDQILTSGSLPMEVMEL HHHHHHHCCCCCHHEEECCCEEEEHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHE KVNDWIAAQK EHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA