Click here to switch to the map view.

The map label for this gene is sohB [H]

Identifier: 167624533

GI number: 167624533

Start: 3171168

End: 3172196

Strand: Reverse

Name: sohB [H]

Synonym: Shal_2612

Alternate gene names: 167624533

Gene position: 3172196-3171168 (Counterclockwise)

Preceding gene: 167624534

Following gene: 167624530

Centisome position: 60.69

GC content: 42.18

Gene sequence:

>1029_bases
TTGGAATTCTTGTACGAGTACGGTTTGTTTTTGGCCAAGGCGGTGACCATTGTGGTCGCAATTCTTGCGGTCGTGATTGT
TGTGCTTGCGTCTTCTATTAAGCACAAAACTGAAAAGGGTGAGCTTAAGCTAACGAACCTAAGCGATAACCTTAAGTTAT
TGAAGCATGACTTGAAAGAAGAGCTGTTATCTAAGAAAGCATTTAAAGCTTACGAAAAACAGTTAAAAGCCGACGAGAAA
GCTAAAGAGAAAGAGCAAAAAGATAACGTCGAAGAAAACGAACCTAAGGTTTTTGTTGTTGATTTTAAAGGCAGCATCGA
CGCGAGTGAAGTCGCGTCACTGCGTGAAGAGATCAGTGCAATTCTTGCTATTGCTGATAAAGGCGATGAAGTCATTGTTA
ATGTTGAGAGCGGCGGCGGAATGGTTCATGGCTATGGTTTAGCATCAAGCCAGCTTGACCGTTTACGACAAGCTGAGATC
CCTCTGAGCATCTGTGTTGATAAAGTGGCTGCCAGTGGTGGTTATATGATGGCCTGTGTGGCGAATAAGATATATTCAGC
GCCGTTTGCCATCGTAGGTTCAATTGGTGTTGTGGCTCAGGTGCCTAACTTTAATCGTTTATTGAAAAAGCACGATATTG
ACTATGAGCAGCACACAGCAGGTGACTTTAAACGTACCCTGACCATCTTTGGTGAAAATACCGATGAAGGCCGTGAGAAG
TTTCAGAAAGAGCTAGAAGAGACTCATGTGCTGTTTAAAGAGTTCATTGCCAAGTACCGTCCCGATTTAGATCTTGATAA
AGTGGCAACGGGTGAGCATTGGTATGGTCAGCAAGCTATTGAATTAGGCTTGGTTGATGAAATTTCAACCAGTGATGATG
TGATTATGAAGCTGGCAAACGAACGTACCGTTATTAAGGTGCGTTATCAGCTTAAGAAGACATTATCAGATAAGATTGCC
CATGGAGCATCACTGTCTTTTAATACCATTTTTAATAAGTTTGCCGAGAAGAATCAGCCGCTTAAATAA

Upstream 100 bases:

>100_bases
CAGCGAAAGCTGGGTTTTTTATTGACATGTTTTATTGGCAAATAGGCTGGTAGAATAGCGACCAATTGAAGAGATAGAAT
TGGTTTAGCTGGAGAATATT

Downstream 100 bases:

>100_bases
TTGAGACTCGGTTTTACCACCAGAAAAACCTGCATTGTGCAGGTTTTTTTTGGTCTAAATGTTAGTGGCCAAATTAACTA
TGCCACCACACTAGAACCAT

Product: putative periplasmic protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MEFLYEYGLFLAKAVTIVVAILAVVIVVLASSIKHKTEKGELKLTNLSDNLKLLKHDLKEELLSKKAFKAYEKQLKADEK
AKEKEQKDNVEENEPKVFVVDFKGSIDASEVASLREEISAILAIADKGDEVIVNVESGGGMVHGYGLASSQLDRLRQAEI
PLSICVDKVAASGGYMMACVANKIYSAPFAIVGSIGVVAQVPNFNRLLKKHDIDYEQHTAGDFKRTLTIFGENTDEGREK
FQKELEETHVLFKEFIAKYRPDLDLDKVATGEHWYGQQAIELGLVDEISTSDDVIMKLANERTVIKVRYQLKKTLSDKIA
HGASLSFNTIFNKFAEKNQPLK

Sequences:

>Translated_342_residues
MEFLYEYGLFLAKAVTIVVAILAVVIVVLASSIKHKTEKGELKLTNLSDNLKLLKHDLKEELLSKKAFKAYEKQLKADEK
AKEKEQKDNVEENEPKVFVVDFKGSIDASEVASLREEISAILAIADKGDEVIVNVESGGGMVHGYGLASSQLDRLRQAEI
PLSICVDKVAASGGYMMACVANKIYSAPFAIVGSIGVVAQVPNFNRLLKKHDIDYEQHTAGDFKRTLTIFGENTDEGREK
FQKELEETHVLFKEFIAKYRPDLDLDKVATGEHWYGQQAIELGLVDEISTSDDVIMKLANERTVIKVRYQLKKTLSDKIA
HGASLSFNTIFNKFAEKNQPLK
>Mature_342_residues
MEFLYEYGLFLAKAVTIVVAILAVVIVVLASSIKHKTEKGELKLTNLSDNLKLLKHDLKEELLSKKAFKAYEKQLKADEK
AKEKEQKDNVEENEPKVFVVDFKGSIDASEVASLREEISAILAIADKGDEVIVNVESGGGMVHGYGLASSQLDRLRQAEI
PLSICVDKVAASGGYMMACVANKIYSAPFAIVGSIGVVAQVPNFNRLLKKHDIDYEQHTAGDFKRTLTIFGENTDEGREK
FQKELEETHVLFKEFIAKYRPDLDLDKVATGEHWYGQQAIELGLVDEISTSDDVIMKLANERTVIKVRYQLKKTLSDKIA
HGASLSFNTIFNKFAEKNQPLK

Specific function: Multicopy suppressor of the htrA (degP) null phenotype. It is possibly a protease, not essential for bacterial viability [H]

COG id: COG0616

COG function: function code OU; Periplasmic serine proteases (ClpP class)

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S49 family [H]

Homologues:

Organism=Escherichia coli, GI1787527, Length=348, Percent_Identity=55.1724137931034, Blast_Score=367, Evalue=1e-103,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002142
- InterPro:   IPR013703 [H]

Pfam domain/function: PF01343 Peptidase_S49; PF08496 Peptidase_S49_N [H]

EC number: 3.4.21.-

Molecular weight: Translated: 38142; Mature: 38142

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFLYEYGLFLAKAVTIVVAILAVVIVVLASSIKHKTEKGELKLTNLSDNLKLLKHDLKE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHH
ELLSKKAFKAYEKQLKADEKAKEKEQKDNVEENEPKVFVVDFKGSIDASEVASLREEISA
HHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
ILAIADKGDEVIVNVESGGGMVHGYGLASSQLDRLRQAEIPLSICVDKVAASGGYMMACV
HHHHCCCCCEEEEEEECCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEHHHH
ANKIYSAPFAIVGSIGVVAQVPNFNRLLKKHDIDYEQHTAGDFKRTLTIFGENTDEGREK
HHHHHHCCHHHHHCCHHEEECCCHHHHHHHHCCCHHHHCCCCHHEEEEEECCCCHHHHHH
FQKELEETHVLFKEFIAKYRPDLDLDKVATGEHWYGQQAIELGLVDEISTSDDVIMKLAN
HHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHCCCHHCCCCCHHHHHHHHC
ERTVIKVRYQLKKTLSDKIAHGASLSFNTIFNKFAEKNQPLK
CCEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MEFLYEYGLFLAKAVTIVVAILAVVIVVLASSIKHKTEKGELKLTNLSDNLKLLKHDLKE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHH
ELLSKKAFKAYEKQLKADEKAKEKEQKDNVEENEPKVFVVDFKGSIDASEVASLREEISA
HHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
ILAIADKGDEVIVNVESGGGMVHGYGLASSQLDRLRQAEIPLSICVDKVAASGGYMMACV
HHHHCCCCCEEEEEEECCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHCCCCEEHHHH
ANKIYSAPFAIVGSIGVVAQVPNFNRLLKKHDIDYEQHTAGDFKRTLTIFGENTDEGREK
HHHHHHCCHHHHHCCHHEEECCCHHHHHHHHCCCHHHHCCCCHHEEEEEECCCCHHHHHH
FQKELEETHVLFKEFIAKYRPDLDLDKVATGEHWYGQQAIELGLVDEISTSDDVIMKLAN
HHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHCCCHHCCCCCHHHHHHHHC
ERTVIKVRYQLKKTLSDKIAHGASLSFNTIFNKFAEKNQPLK
CCEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1885549; 9097039; 9278503; 3029379 [H]