Click here to switch to the map view.

The map label for this gene is 167624475

Identifier: 167624475

GI number: 167624475

Start: 3092491

End: 3093669

Strand: Reverse

Name: 167624475

Synonym: Shal_2554

Alternate gene names: NA

Gene position: 3093669-3092491 (Counterclockwise)

Preceding gene: 167624481

Following gene: 167624474

Centisome position: 59.19

GC content: 46.06

Gene sequence:

>1179_bases
ATGTGGGTTGGTATATTGTATACGCATGTTTTCAAAATGAAACCCTTTTGTATTGGGAATGTATATGAAATTCTGCTACC
AAAACCACAAGAATTATTGTATACAATATCCAAATATTATCGCTGGAGCAATAAAAATATGCAATCGATCACAATAAGCC
CTGAATTGGCGAGTCATTTCAAAGATTTTGTCACCATTGATGCCCACACCGAGGGTGAGCCACTAAGGATTATTATTTCG
GGGTATCCGGAGATCAAAGGCGCTACGATTTTAGAGAAGCGTCAATATATGCAGCAAAATCTGGACCGTTACCGCAAGTT
ACTGATGCATGAACCTAGGGGCCATGCGGACATGTATGGTGCATTGATTACAGAGGCAGTGACTCCTGAGGCTGATTTTG
GGGTGCTTTTTTTACATAACGAAGGCTATAGCAGCATGTGTGGTCACGGGATCCTGGCCTTAGTTAAGGTGATGTGCCAA
ACGGGGGCTATCGATTTAGGACAAGAATCACGGATCATTAAAATCGATGCGCCAGCAGGTTTGATTACCGCCAAGGCCTA
TCGCGATCCGCAGGGTAAAACTCATGCTAGCTTTAAGAATGTAGACTCTTGGGCCGATGCACTCGATTGCAGTGTGAATG
TCGAGGGTTTTGGTGAGGTTCGCTATGATATCGGCTTTGGTGGCGCCTATTATGCTTATGTCGATGCCGATGCTCACGGC
ATTAGCTGTGGTCAAGATAATGTGGCGCAGCTGATTGATATTGGCCGCAGAATTAAACTGGCGGTAATGGCAACTCACCC
ATTAGTACATCCACTAGAGGAAGAGTTAAGCTTTCTTTATGGCACCATCTTTACCTCGAAAAAGGTGACGAACCCCGAGG
CTCATTCACGCCATGTGTGTATTTTTGCTGATGGTGAAGTGGACCGCTCACCTACGGGAACAGGCGTTGCAGGGAGAGTG
GCGCTTTTATATGCCAAGGGCGAGGTCGAGCTTAACGCGCCGCTGATGATTGAAAGCATTGTCGATGGCAGAATGATTGT
TAGTGCCTCGGCGGTGTCCGAGTTTCATGGTAAACAGGCGGTGATCCCTGAGGTTTCGGGTCGCTCTTATATTACCGGCA
AGCATCAGTTCTTTATCGACTCCGATGATGTGTTTCAAAACGGTTTTATGTTGCGTTAA

Upstream 100 bases:

>100_bases
AACCATCTTCATTAAACTGTGTTGAGATCGCAGGAAAAACACCTTGCCAATTTACGTTCATATTAAGCCTCTATTACTGC
TGTGTCGCGTTTGGAGTTAT

Downstream 100 bases:

>100_bases
TTGCATCAGCAAAATGAGTGGAGAAAAGTTATGAGCAATAATAGGCATCCTGACACATTGACCATTGTTGGCGCAGGTAT
TGTGGGATTAGCGGCGGCGA

Product: proline racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MWVGILYTHVFKMKPFCIGNVYEILLPKPQELLYTISKYYRWSNKNMQSITISPELASHFKDFVTIDAHTEGEPLRIIIS
GYPEIKGATILEKRQYMQQNLDRYRKLLMHEPRGHADMYGALITEAVTPEADFGVLFLHNEGYSSMCGHGILALVKVMCQ
TGAIDLGQESRIIKIDAPAGLITAKAYRDPQGKTHASFKNVDSWADALDCSVNVEGFGEVRYDIGFGGAYYAYVDADAHG
ISCGQDNVAQLIDIGRRIKLAVMATHPLVHPLEEELSFLYGTIFTSKKVTNPEAHSRHVCIFADGEVDRSPTGTGVAGRV
ALLYAKGEVELNAPLMIESIVDGRMIVSASAVSEFHGKQAVIPEVSGRSYITGKHQFFIDSDDVFQNGFMLR

Sequences:

>Translated_392_residues
MWVGILYTHVFKMKPFCIGNVYEILLPKPQELLYTISKYYRWSNKNMQSITISPELASHFKDFVTIDAHTEGEPLRIIIS
GYPEIKGATILEKRQYMQQNLDRYRKLLMHEPRGHADMYGALITEAVTPEADFGVLFLHNEGYSSMCGHGILALVKVMCQ
TGAIDLGQESRIIKIDAPAGLITAKAYRDPQGKTHASFKNVDSWADALDCSVNVEGFGEVRYDIGFGGAYYAYVDADAHG
ISCGQDNVAQLIDIGRRIKLAVMATHPLVHPLEEELSFLYGTIFTSKKVTNPEAHSRHVCIFADGEVDRSPTGTGVAGRV
ALLYAKGEVELNAPLMIESIVDGRMIVSASAVSEFHGKQAVIPEVSGRSYITGKHQFFIDSDDVFQNGFMLR
>Mature_392_residues
MWVGILYTHVFKMKPFCIGNVYEILLPKPQELLYTISKYYRWSNKNMQSITISPELASHFKDFVTIDAHTEGEPLRIIIS
GYPEIKGATILEKRQYMQQNLDRYRKLLMHEPRGHADMYGALITEAVTPEADFGVLFLHNEGYSSMCGHGILALVKVMCQ
TGAIDLGQESRIIKIDAPAGLITAKAYRDPQGKTHASFKNVDSWADALDCSVNVEGFGEVRYDIGFGGAYYAYVDADAHG
ISCGQDNVAQLIDIGRRIKLAVMATHPLVHPLEEELSFLYGTIFTSKKVTNPEAHSRHVCIFADGEVDRSPTGTGVAGRV
ALLYAKGEVELNAPLMIESIVDGRMIVSASAVSEFHGKQAVIPEVSGRSYITGKHQFFIDSDDVFQNGFMLR

Specific function: Unknown

COG id: COG3938

COG function: function code E; Proline racemase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the proline racemase family [H]

Homologues:

Organism=Homo sapiens, GI21389361, Length=354, Percent_Identity=42.090395480226, Blast_Score=268, Evalue=7e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008794 [H]

Pfam domain/function: PF05544 Pro_racemase [H]

EC number: NA

Molecular weight: Translated: 43506; Mature: 43506

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWVGILYTHVFKMKPFCIGNVYEILLPKPQELLYTISKYYRWSNKNMQSITISPELASHF
CEEEEEEHHHHHCCCCEECCCCEEECCCHHHHHHHHHHHHEECCCCCEEEEECHHHHHHH
KDFVTIDAHTEGEPLRIIISGYPEIKGATILEKRQYMQQNLDRYRKLLMHEPRGHADMYG
HHEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
ALITEAVTPEADFGVLFLHNEGYSSMCGHGILALVKVMCQTGAIDLGQESRIIKIDAPAG
HHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
LITAKAYRDPQGKTHASFKNVDSWADALDCSVNVEGFGEVRYDIGFGGAYYAYVDADAHG
EEEEECCCCCCCCCCCCCCCHHHHHHHHCCEEEECCCCEEEEEEECCCEEEEEEECCCCC
ISCGQDNVAQLIDIGRRIKLAVMATHPLVHPLEEELSFLYGTIFTSKKVTNPEAHSRHVC
CCCCCCHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEE
IFADGEVDRSPTGTGVAGRVALLYAKGEVELNAPLMIESIVDGRMIVSASAVSEFHGKQA
EEECCCCCCCCCCCCCCCEEEEEEEECCEEECCCEEEEECCCCEEEEEHHHHHHHCCCEE
VIPEVSGRSYITGKHQFFIDSDDVFQNGFMLR
ECCCCCCCEEEECCEEEEECCCHHHCCCCCCC
>Mature Secondary Structure
MWVGILYTHVFKMKPFCIGNVYEILLPKPQELLYTISKYYRWSNKNMQSITISPELASHF
CEEEEEEHHHHHCCCCEECCCCEEECCCHHHHHHHHHHHHEECCCCCEEEEECHHHHHHH
KDFVTIDAHTEGEPLRIIISGYPEIKGATILEKRQYMQQNLDRYRKLLMHEPRGHADMYG
HHEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
ALITEAVTPEADFGVLFLHNEGYSSMCGHGILALVKVMCQTGAIDLGQESRIIKIDAPAG
HHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCC
LITAKAYRDPQGKTHASFKNVDSWADALDCSVNVEGFGEVRYDIGFGGAYYAYVDADAHG
EEEEECCCCCCCCCCCCCCCHHHHHHHHCCEEEECCCCEEEEEEECCCEEEEEEECCCCC
ISCGQDNVAQLIDIGRRIKLAVMATHPLVHPLEEELSFLYGTIFTSKKVTNPEAHSRHVC
CCCCCCHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEE
IFADGEVDRSPTGTGVAGRVALLYAKGEVELNAPLMIESIVDGRMIVSASAVSEFHGKQA
EEECCCCCCCCCCCCCCCEEEEEEEECCEEECCCEEEEECCCCEEEEEHHHHHHHCCCEE
VIPEVSGRSYITGKHQFFIDSDDVFQNGFMLR
ECCCCCCCEEEECCEEEEECCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]