| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624462
Identifier: 167624462
GI number: 167624462
Start: 3071426
End: 3071791
Strand: Reverse
Name: 167624462
Synonym: Shal_2540
Alternate gene names: NA
Gene position: 3071791-3071426 (Counterclockwise)
Preceding gene: 167624464
Following gene: 167624461
Centisome position: 58.77
GC content: 40.44
Gene sequence:
>366_bases GTGCTTACTAAAATTTTAATCACCTTACTGATCATCGTTGGCGCGATGGTTTATATCCGTAAACCGAGAGAAAACGGTGT CCGAGCGAGTACAAAAGAGTTAGGTAAGAACATGAAGCTGCGGATTGGTGCTTATGTACTGATTAGTTTATCGCTCACCG CTACGGGTGCTTATTGGTATTGGGATTGGAGTGATGGTAATAAAGTTGTCAGTGTGACAATAGTGTCACCTATGAGTGAC GAGACGGTTGTTTATCAAGTTAGAAAGAAAGATATTGCTAGCAATGAGATAACAACTGTCAACGGAATTCGCATTAGATT GTCCAATCAGGAGCGTATTATCGTTGCGAATTCGGTTAATAAGTAA
Upstream 100 bases:
>100_bases CTGAATTTACCTCACTCGTATGCCAATGCTTGGATATTAATAACAGTTTATCCGTTTTTTTGTAGGTATAATTAGCGTAA ACAGCGCAAAGGGAAAGCAA
Downstream 100 bases:
>100_bases TTTTTGAGCACTTTATTATGCTTAACCCTTTGCAATAAGGTGTTATAGGTTAGAATAGCCCACGTTTTTTTGTTCAGAAT ATTTGCTATACGCGTTTAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 121; Mature: 121
Protein sequence:
>121_residues MLTKILITLLIIVGAMVYIRKPRENGVRASTKELGKNMKLRIGAYVLISLSLTATGAYWYWDWSDGNKVVSVTIVSPMSD ETVVYQVRKKDIASNEITTVNGIRIRLSNQERIIVANSVNK
Sequences:
>Translated_121_residues MLTKILITLLIIVGAMVYIRKPRENGVRASTKELGKNMKLRIGAYVLISLSLTATGAYWYWDWSDGNKVVSVTIVSPMSD ETVVYQVRKKDIASNEITTVNGIRIRLSNQERIIVANSVNK >Mature_121_residues MLTKILITLLIIVGAMVYIRKPRENGVRASTKELGKNMKLRIGAYVLISLSLTATGAYWYWDWSDGNKVVSVTIVSPMSD ETVVYQVRKKDIASNEITTVNGIRIRLSNQERIIVANSVNK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13571; Mature: 13571
Theoretical pI: Translated: 10.55; Mature: 10.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTKILITLLIIVGAMVYIRKPRENGVRASTKELGKNMKLRIGAYVLISLSLTATGAYWY CHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHCCCCEEEEEEEEEEEEEEEECCEEEE WDWSDGNKVVSVTIVSPMSDETVVYQVRKKDIASNEITTVNGIRIRLSNQERIIVANSVN EEECCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCEEEECEEEEEECCCCEEEEEECCC K C >Mature Secondary Structure MLTKILITLLIIVGAMVYIRKPRENGVRASTKELGKNMKLRIGAYVLISLSLTATGAYWY CHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHCCCCEEEEEEEEEEEEEEEECCEEEE WDWSDGNKVVSVTIVSPMSDETVVYQVRKKDIASNEITTVNGIRIRLSNQERIIVANSVN EEECCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCEEEECEEEEEECCCCEEEEEECCC K C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA