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The map label for this gene is phnC [H]

Identifier: 167624451

GI number: 167624451

Start: 3059256

End: 3059987

Strand: Reverse

Name: phnC [H]

Synonym: Shal_2529

Alternate gene names: 167624451

Gene position: 3059987-3059256 (Counterclockwise)

Preceding gene: 167624452

Following gene: 167624450

Centisome position: 58.54

GC content: 46.31

Gene sequence:

>732_bases
ATGTTAGTGCTTAACGATTTAGTCATTCAGTTTGGTGATAAAGTGGCTTTAGACATTGAGAGCTTAGCCATCACCCGTGG
TGAAAAAATTGCCATTATTGGGCGTTCCGGTAGTGGCAAGTCGACCCTAATTAATCACATTTATGAAATGCTACGTCCAA
GCTCGGCCCTATGTTCTCAACGACAAGGCTTAGTTGAAAATTTAAGTGTGTTTCATAATGTTTTTATGGGGGCGCTTAAT
CGCCACCGCTGGTATTACAATCTGCTGAACCTTGTTTATCCGCTGAGCCAGCCATTAAAAGAGGTTGGCCTCATTGCTAC
AGAGCTTGAACTGGACTGCCCGCTAACAAAACCCGTTTCAGCCTTGTCTGGTGGACAAAGGCAACGTGTTGCGCTGGGTC
GAGCCTTGTATCAACACCAAGAATTGTTTATTGGTGATGAGCCATTCTCGGCGCTCGATCCTGTAATGGGGCAACGCTTG
TTAACTCATGTATTAGCGGATCACAGCACTGTTGTGATGGTTTTACACGACATGGATATGGCACTGGCTCATTTTGACAG
AGTCATCGGTCTTCGAGACGGTCGAAAGGTGCTCGACATTGATGCCAAGTCCCTCAACGTTAATACCCTAGAAGCTTTCT
ATCAAGATGATACGGCACTCGATTTTATGGTGGCGGCTTCGCCAGCAACGAATCGTCTCGAATCGCTTCCACGCGCTGTT
AAGCGTTATTAG

Upstream 100 bases:

>100_bases
TTAAAAAGTTTTCCTCGCCGGTCATTTGTTCCGGCTGACAATTTAGATTATCAGCCGATAGAAGATGTGGCGAAGGCTAT
TGGGCTAATAGACTAACCCC

Downstream 100 bases:

>100_bases
TTTGCCAAAACAAAGCCTTACGCCGCCAACCTTGTTTGCATTTGTCGGCTACTGGAAAAAAGTGACCCTAACACTGTGGG
CGATAACACTGCTCAGTTTC

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MLVLNDLVIQFGDKVALDIESLAITRGEKIAIIGRSGSGKSTLINHIYEMLRPSSALCSQRQGLVENLSVFHNVFMGALN
RHRWYYNLLNLVYPLSQPLKEVGLIATELELDCPLTKPVSALSGGQRQRVALGRALYQHQELFIGDEPFSALDPVMGQRL
LTHVLADHSTVVMVLHDMDMALAHFDRVIGLRDGRKVLDIDAKSLNVNTLEAFYQDDTALDFMVAASPATNRLESLPRAV
KRY

Sequences:

>Translated_243_residues
MLVLNDLVIQFGDKVALDIESLAITRGEKIAIIGRSGSGKSTLINHIYEMLRPSSALCSQRQGLVENLSVFHNVFMGALN
RHRWYYNLLNLVYPLSQPLKEVGLIATELELDCPLTKPVSALSGGQRQRVALGRALYQHQELFIGDEPFSALDPVMGQRL
LTHVLADHSTVVMVLHDMDMALAHFDRVIGLRDGRKVLDIDAKSLNVNTLEAFYQDDTALDFMVAASPATNRLESLPRAV
KRY
>Mature_243_residues
MLVLNDLVIQFGDKVALDIESLAITRGEKIAIIGRSGSGKSTLINHIYEMLRPSSALCSQRQGLVENLSVFHNVFMGALN
RHRWYYNLLNLVYPLSQPLKEVGLIATELELDCPLTKPVSALSGGQRQRVALGRALYQHQELFIGDEPFSALDPVMGQRL
LTHVLADHSTVVMVLHDMDMALAHFDRVIGLRDGRKVLDIDAKSLNVNTLEAFYQDDTALDFMVAASPATNRLESLPRAV
KRY

Specific function: Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system [H]

COG id: COG3638

COG function: function code P; ABC-type phosphate/phosphonate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI9955970, Length=200, Percent_Identity=31, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI66529005, Length=191, Percent_Identity=30.3664921465969, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI4557481, Length=198, Percent_Identity=28.2828282828283, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI89111135, Length=195, Percent_Identity=27.6923076923077, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI1790544, Length=255, Percent_Identity=29.4117647058824, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1786253, Length=200, Percent_Identity=34, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1788225, Length=229, Percent_Identity=33.1877729257642, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787164, Length=220, Percent_Identity=29.0909090909091, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787029, Length=248, Percent_Identity=31.4516129032258, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1786563, Length=215, Percent_Identity=29.3023255813954, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787712, Length=216, Percent_Identity=30.5555555555556, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1790467, Length=216, Percent_Identity=28.7037037037037, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1790739, Length=213, Percent_Identity=29.1079812206573, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786398, Length=203, Percent_Identity=32.512315270936, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1788761, Length=210, Percent_Identity=30.952380952381, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787089, Length=232, Percent_Identity=29.3103448275862, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI87082267, Length=191, Percent_Identity=30.3664921465969, Blast_Score=61, Evalue=6e-11,
Organism=Escherichia coli, GI1787370, Length=199, Percent_Identity=28.1407035175879, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI1789991, Length=236, Percent_Identity=26.6949152542373, Blast_Score=60, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17551700, Length=208, Percent_Identity=29.3269230769231, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI86564969, Length=189, Percent_Identity=31.2169312169312, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI71992066, Length=189, Percent_Identity=31.2169312169312, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI71992070, Length=189, Percent_Identity=31.2169312169312, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI25146765, Length=189, Percent_Identity=31.2169312169312, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI45550390, Length=186, Percent_Identity=30.6451612903226, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR012693
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: =3.6.3.28 [H]

Molecular weight: Translated: 27068; Mature: 27068

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVLNDLVIQFGDKVALDIESLAITRGEKIAIIGRSGSGKSTLINHIYEMLRPSSALCSQ
CEEHHHHHHHCCCEEEEEHHHHHEECCCEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHH
RQGLVENLSVFHNVFMGALNRHRWYYNLLNLVYPLSQPLKEVGLIATELELDCPLTKPVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHEEEECCCCCCCCHH
ALSGGQRQRVALGRALYQHQELFIGDEPFSALDPVMGQRLLTHVLADHSTVVMVLHDMDM
HHCCCCHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHH
ALAHFDRVIGLRDGRKVLDIDAKSLNVNTLEAFYQDDTALDFMVAASPATNRLESLPRAV
HHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHH
KRY
HCC
>Mature Secondary Structure
MLVLNDLVIQFGDKVALDIESLAITRGEKIAIIGRSGSGKSTLINHIYEMLRPSSALCSQ
CEEHHHHHHHCCCEEEEEHHHHHEECCCEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHH
RQGLVENLSVFHNVFMGALNRHRWYYNLLNLVYPLSQPLKEVGLIATELELDCPLTKPVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHEEEECCCCCCCCHH
ALSGGQRQRVALGRALYQHQELFIGDEPFSALDPVMGQRLLTHVLADHSTVVMVLHDMDM
HHCCCCHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHH
ALAHFDRVIGLRDGRKVLDIDAKSLNVNTLEAFYQDDTALDFMVAASPATNRLESLPRAV
HHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHH
KRY
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12534463 [H]