| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is rec2 [H]
Identifier: 167624429
GI number: 167624429
Start: 3024081
End: 3026432
Strand: Reverse
Name: rec2 [H]
Synonym: Shal_2507
Alternate gene names: 167624429
Gene position: 3026432-3024081 (Counterclockwise)
Preceding gene: 167624431
Following gene: 167624428
Centisome position: 57.9
GC content: 45.41
Gene sequence:
>2352_bases ATGAATCGATTTATGTGCGGCTACTGCATCACTATTGTTTCAGCGTTGCTTTGGCCCTCTCTACCTACTCTCTATATTCT GCCTGTACTTATCGTTGTGGCTATTATCGCGTGTAAGCGTGTGCCGTTTATCGCTGGCAGCCTGTTTGCAATTAGTTGGA TTAGCCTGTTTTATTCACTATTAATGGGTTGGAATACAGATGAACGAGTCGATACATTGAATGTCGAGTCTGAGATCATA TCATTTGTTCATACAAACGGCGACCGGATCAGTATGGATATTGTGCTTATCGATTCGGTTTTTTCCCATATTGTTAATCG AAAGCTGAGGTTAACTTGGCGTGACGCTCCGCCCGTAGCACCAGGTCAGCGCTGGTTGTTAACCATAAAGCCCAAGTCCA TCACCAGCATGTTAAATCAGGGCGGTTTTAACCAACAAAAGAATTTGCTCGCTAAACATATTATAGGAAAAGGTTGGGTT GTTAGTGGGAAGTTGTTAAGAAACGAGCCTGATTATCGTACAAGATTAATTTCAGCGCTGAAATCTGTGTTGGTCGATGA CGCTAGTGGCGATCTGTTACTTGCGCTGGTGGCCGGAGATAGGAGCCTTATTTCATCAGCACGTTGGCAACAGCTCAGAA ATACGGGAACGGGTCATCTGTTTGCTATCTCAGGTTTACACCTTTCGGTGGTATCGCTTTGGTTGTTGATCCTTACTCGC TTTTTCTTGTATCGATACTCGGCGGTAAATACTCGCCGAAATTGGTTGTTGTGTTTGGTTATCTCTGCTCTGGGCGCAAT CGCCTACGCATACCTTGCGGGTTTTTCTGTTTCGACACAAAGAGCGCTGATCATGTTGCTGGCGTTTATCTGTTTTAGCG CATTGAAAACACACTCCTCAAGTTGGGAGCGGCTACTCTATGCACTCTTTATCGTCTTAGTTCTTGACCCCTTGAGCATG CTTAGTGCTGGTTTTTGGCTATCTTTTAGCGCCTTGGCGATTATCTTACTCACTGTGACTCAGTATCGGTTTAGTGATGA AGCGGGTTCCAATATCGGCCTGTCACCAAGCGAGAGTGTTGCCACAAGTTGGAATTTGACTCTATGGAGCAAGCTTCGTA TGGCGGCCCTCTCTTTTTGGGCGGTACAGTGGCGTTTAACCCTTGGGTTATGTGTGGTTCAGGCTATCTTTTTTTCCGGA GCATCAATGGCCAGCCTAGTCGTCAATCTGCTGTTAGTCCCTTGGTTTACCTTGCTGCTTATCCCTATAAGTCTGTTGTC ATTATTGGTTTTTATTCTGCTAACCAACTTTGGTATATCGGCGCCGGGAGTATTTGTCCTTGCGGCTTATGCTATGTCGC CTGTGGTCAGTATATTGAACTACAGTAGTTCTGTTGATTTTGTGTGGCTCGATCTCGCCAATGAGGTTATCGCTGCTTTG ATGGTTGCATTAATAGGCCTTTACCTTACGGTCAATTTTAAACAATGGCCATGGCGGATCCTACTGTCGGTGATGTTCAT TCCCTTATTGCTCACGATACTGTTTAGATTGATGCCCATTGACGATAAGCGCTGGCAAGTTCACCTGCTCGATGTGGGCC AAGGTCTCTCGCTCGTTATTGAGCAGGGCAAGCGAGCCATTATTTATGATACAGGCGCCCGTTATGGCAAAAACTTTAGT TATGCTGAGCGGGCACTGCAGCCATTTCTCAAAAGTAGGGGGCTTGGGCATATCGATTACCTTGTTGTGAGTCATGGTGA CAATGATCATTCTGGCGGCGCCGCTTATATCATTGATAATTACCCCGATGCCGAGGTGATTTCAGATTTGCCTCTTCAGC AACATGATTGCAGACCCAAGACACTGTTTTGGCAGGGGCTGAGACTCGAGATATTGGCGCCCTATGTGCCTAAATCGGGT AATAACGGTTCATGTGTGATTCGAGTGAGTGATGCTGATAACAGCGTATTATTAACGGGGGATATAGAGCAGCAGGCTGA GTATCGATTGCTTGAAATGACAAAGAGTCATGACCTCATTCTACAGAGTCGATTGTTAATAGCCCCTCATCATGGTAGTA AGACCTCATCGACCGAATCATTTATTGATGCCGTCTCTCCTGAGCTGGTTTTGTTTCCAGCAGGCTTTCGAAACCGCTAT GGCTTTCCTAACAAAGAGGTCATTGCACGCTATCAGCAACGGGATATTTTAACTCTCACGGCTGGGATGCAGGGGCAGGT CAGTGTTTTATTTGACCAAGAAAGTATGAAAGTTCGTACATATCGTTCAGATTTTGCACCATTTTGGTATAACCAAGTGT TTAGGTTTGGTCAGATTAAAAATCCAGAGTAG
Upstream 100 bases:
>100_bases GCGCAAGTGTTTGTGTTCGCGCAGTGTTTCTGGCTTCGGCATAAACTTTTCAATTATTTTTTTTGGCATAACTTCAATTT GCTGTCTTAACTTACTCACT
Downstream 100 bases:
>100_bases AATGCTTCTTTTGCCAATATGTTAATCTCTCAATGACAACATCTCCTAAAAATGAAGTCTGGACTGTATTTAAGCGCCTG TTAGGCTATTTAAAGCCTCT
Product: DNA internalization-like competence protein ComEC/Rec2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 783; Mature: 783
Protein sequence:
>783_residues MNRFMCGYCITIVSALLWPSLPTLYILPVLIVVAIIACKRVPFIAGSLFAISWISLFYSLLMGWNTDERVDTLNVESEII SFVHTNGDRISMDIVLIDSVFSHIVNRKLRLTWRDAPPVAPGQRWLLTIKPKSITSMLNQGGFNQQKNLLAKHIIGKGWV VSGKLLRNEPDYRTRLISALKSVLVDDASGDLLLALVAGDRSLISSARWQQLRNTGTGHLFAISGLHLSVVSLWLLILTR FFLYRYSAVNTRRNWLLCLVISALGAIAYAYLAGFSVSTQRALIMLLAFICFSALKTHSSSWERLLYALFIVLVLDPLSM LSAGFWLSFSALAIILLTVTQYRFSDEAGSNIGLSPSESVATSWNLTLWSKLRMAALSFWAVQWRLTLGLCVVQAIFFSG ASMASLVVNLLLVPWFTLLLIPISLLSLLVFILLTNFGISAPGVFVLAAYAMSPVVSILNYSSSVDFVWLDLANEVIAAL MVALIGLYLTVNFKQWPWRILLSVMFIPLLLTILFRLMPIDDKRWQVHLLDVGQGLSLVIEQGKRAIIYDTGARYGKNFS YAERALQPFLKSRGLGHIDYLVVSHGDNDHSGGAAYIIDNYPDAEVISDLPLQQHDCRPKTLFWQGLRLEILAPYVPKSG NNGSCVIRVSDADNSVLLTGDIEQQAEYRLLEMTKSHDLILQSRLLIAPHHGSKTSSTESFIDAVSPELVLFPAGFRNRY GFPNKEVIARYQQRDILTLTAGMQGQVSVLFDQESMKVRTYRSDFAPFWYNQVFRFGQIKNPE
Sequences:
>Translated_783_residues MNRFMCGYCITIVSALLWPSLPTLYILPVLIVVAIIACKRVPFIAGSLFAISWISLFYSLLMGWNTDERVDTLNVESEII SFVHTNGDRISMDIVLIDSVFSHIVNRKLRLTWRDAPPVAPGQRWLLTIKPKSITSMLNQGGFNQQKNLLAKHIIGKGWV VSGKLLRNEPDYRTRLISALKSVLVDDASGDLLLALVAGDRSLISSARWQQLRNTGTGHLFAISGLHLSVVSLWLLILTR FFLYRYSAVNTRRNWLLCLVISALGAIAYAYLAGFSVSTQRALIMLLAFICFSALKTHSSSWERLLYALFIVLVLDPLSM LSAGFWLSFSALAIILLTVTQYRFSDEAGSNIGLSPSESVATSWNLTLWSKLRMAALSFWAVQWRLTLGLCVVQAIFFSG ASMASLVVNLLLVPWFTLLLIPISLLSLLVFILLTNFGISAPGVFVLAAYAMSPVVSILNYSSSVDFVWLDLANEVIAAL MVALIGLYLTVNFKQWPWRILLSVMFIPLLLTILFRLMPIDDKRWQVHLLDVGQGLSLVIEQGKRAIIYDTGARYGKNFS YAERALQPFLKSRGLGHIDYLVVSHGDNDHSGGAAYIIDNYPDAEVISDLPLQQHDCRPKTLFWQGLRLEILAPYVPKSG NNGSCVIRVSDADNSVLLTGDIEQQAEYRLLEMTKSHDLILQSRLLIAPHHGSKTSSTESFIDAVSPELVLFPAGFRNRY GFPNKEVIARYQQRDILTLTAGMQGQVSVLFDQESMKVRTYRSDFAPFWYNQVFRFGQIKNPE >Mature_783_residues MNRFMCGYCITIVSALLWPSLPTLYILPVLIVVAIIACKRVPFIAGSLFAISWISLFYSLLMGWNTDERVDTLNVESEII SFVHTNGDRISMDIVLIDSVFSHIVNRKLRLTWRDAPPVAPGQRWLLTIKPKSITSMLNQGGFNQQKNLLAKHIIGKGWV VSGKLLRNEPDYRTRLISALKSVLVDDASGDLLLALVAGDRSLISSARWQQLRNTGTGHLFAISGLHLSVVSLWLLILTR FFLYRYSAVNTRRNWLLCLVISALGAIAYAYLAGFSVSTQRALIMLLAFICFSALKTHSSSWERLLYALFIVLVLDPLSM LSAGFWLSFSALAIILLTVTQYRFSDEAGSNIGLSPSESVATSWNLTLWSKLRMAALSFWAVQWRLTLGLCVVQAIFFSG ASMASLVVNLLLVPWFTLLLIPISLLSLLVFILLTNFGISAPGVFVLAAYAMSPVVSILNYSSSVDFVWLDLANEVIAAL MVALIGLYLTVNFKQWPWRILLSVMFIPLLLTILFRLMPIDDKRWQVHLLDVGQGLSLVIEQGKRAIIYDTGARYGKNFS YAERALQPFLKSRGLGHIDYLVVSHGDNDHSGGAAYIIDNYPDAEVISDLPLQQHDCRPKTLFWQGLRLEILAPYVPKSG NNGSCVIRVSDADNSVLLTGDIEQQAEYRLLEMTKSHDLILQSRLLIAPHHGSKTSSTESFIDAVSPELVLFPAGFRNRY GFPNKEVIARYQQRDILTLTAGMQGQVSVLFDQESMKVRTYRSDFAPFWYNQVFRFGQIKNPE
Specific function: Might contribute to transformation as a member of a membrane-bound pore complex at the base of the transformasome. It could directly interact with transforming DNA during translocation indirectly by participating in the assembly of the pore [H]
COG id: COG2333
COG function: function code R; Predicted hydrolase (metallo-beta-lactamase superfamily)
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87081801, Length=794, Percent_Identity=27.5818639798489, Blast_Score=238, Evalue=1e-63,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 87685; Mature: 87685
Theoretical pI: Translated: 9.22; Mature: 9.22
Prosite motif: PS00659 GLYCOSYL_HYDROL_F5
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRFMCGYCITIVSALLWPSLPTLYILPVLIVVAIIACKRVPFIAGSLFAISWISLFYSL CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH LMGWNTDERVDTLNVESEIISFVHTNGDRISMDIVLIDSVFSHIVNRKLRLTWRDAPPVA HHCCCCCCCCEEECHHHHHHHHHCCCCCEEEEEEEEHHHHHHHHHCCEEEEEECCCCCCC PGQRWLLTIKPKSITSMLNQGGFNQQKNLLAKHIIGKGWVVSGKLLRNEPDYRTRLISAL CCCEEEEEECCHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEECHHHCCCCHHHHHHHHHH KSVLVDDASGDLLLALVAGDRSLISSARWQQLRNTGTGHLFAISGLHLSVVSLWLLILTR HHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHH FFLYRYSAVNTRRNWLLCLVISALGAIAYAYLAGFSVSTQRALIMLLAFICFSALKTHSS HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC SWERLLYALFIVLVLDPLSMLSAGFWLSFSALAIILLTVTQYRFSDEAGSNIGLSPSESV HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH ATSWNLTLWSKLRMAALSFWAVQWRLTLGLCVVQAIFFSGASMASLVVNLLLVPWFTLLL HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH IPISLLSLLVFILLTNFGISAPGVFVLAAYAMSPVVSILNYSSSVDFVWLDLANEVIAAL HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHH MVALIGLYLTVNFKQWPWRILLSVMFIPLLLTILFRLMPIDDKRWQVHLLDVGQGLSLVI HHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHH EQGKRAIIYDTGARYGKNFSYAERALQPFLKSRGLGHIDYLVVSHGDNDHSGGAAYIIDN HCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEEECC YPDAEVISDLPLQQHDCRPKTLFWQGLRLEILAPYVPKSGNNGSCVIRVSDADNSVLLTG CCCHHHHHCCCCCCCCCCCCHHHHCCCEEEEEECCCCCCCCCCEEEEEEECCCCCEEEEC DIEQQAEYRLLEMTKSHDLILQSRLLIAPHHGSKTSSTESFIDAVSPELVLFPAGFRNRY CCHHHHHHHHHHHCCCCHHHHHCCEEEECCCCCCCCCHHHHHHHCCCCEEEECCCCCCCC GFPNKEVIARYQQRDILTLTAGMQGQVSVLFDQESMKVRTYRSDFAPFWYNQVFRFGQIK CCCCHHHHHHHHHCCEEEEECCCCCCEEEEECCCCCCEEHHHCCCCHHHHHHHHHHCCCC NPE CCC >Mature Secondary Structure MNRFMCGYCITIVSALLWPSLPTLYILPVLIVVAIIACKRVPFIAGSLFAISWISLFYSL CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH LMGWNTDERVDTLNVESEIISFVHTNGDRISMDIVLIDSVFSHIVNRKLRLTWRDAPPVA HHCCCCCCCCEEECHHHHHHHHHCCCCCEEEEEEEEHHHHHHHHHCCEEEEEECCCCCCC PGQRWLLTIKPKSITSMLNQGGFNQQKNLLAKHIIGKGWVVSGKLLRNEPDYRTRLISAL CCCEEEEEECCHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEECHHHCCCCHHHHHHHHHH KSVLVDDASGDLLLALVAGDRSLISSARWQQLRNTGTGHLFAISGLHLSVVSLWLLILTR HHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHH FFLYRYSAVNTRRNWLLCLVISALGAIAYAYLAGFSVSTQRALIMLLAFICFSALKTHSS HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC SWERLLYALFIVLVLDPLSMLSAGFWLSFSALAIILLTVTQYRFSDEAGSNIGLSPSESV HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH ATSWNLTLWSKLRMAALSFWAVQWRLTLGLCVVQAIFFSGASMASLVVNLLLVPWFTLLL HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH IPISLLSLLVFILLTNFGISAPGVFVLAAYAMSPVVSILNYSSSVDFVWLDLANEVIAAL HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHH MVALIGLYLTVNFKQWPWRILLSVMFIPLLLTILFRLMPIDDKRWQVHLLDVGQGLSLVI HHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHH EQGKRAIIYDTGARYGKNFSYAERALQPFLKSRGLGHIDYLVVSHGDNDHSGGAAYIIDN HCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEEECC YPDAEVISDLPLQQHDCRPKTLFWQGLRLEILAPYVPKSGNNGSCVIRVSDADNSVLLTG CCCHHHHHCCCCCCCCCCCCHHHHCCCEEEEEECCCCCCCCCCEEEEEEECCCCCEEEEC DIEQQAEYRLLEMTKSHDLILQSRLLIAPHHGSKTSSTESFIDAVSPELVLFPAGFRNRY CCHHHHHHHHHHHCCCCHHHHHCCEEEECCCCCCCCCHHHHHHHCCCCEEEECCCCCCCC GFPNKEVIARYQQRDILTLTAGMQGQVSVLFDQESMKVRTYRSDFAPFWYNQVFRFGQIK CCCCHHHHHHHHHCCEEEEECCCCCCEEEEECCCCCCEEHHHCCCCHHHHHHHHHHCCCC NPE CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8063112; 7542800 [H]