Click here to switch to the map view.

The map label for this gene is ybjY [C]

Identifier: 167624372

GI number: 167624372

Start: 2955182

End: 2956348

Strand: Reverse

Name: ybjY [C]

Synonym: Shal_2449

Alternate gene names: 167624372

Gene position: 2956348-2955182 (Counterclockwise)

Preceding gene: 167624373

Following gene: 167624371

Centisome position: 56.56

GC content: 45.67

Gene sequence:

>1167_bases
ATGAAGATGACAGCCATAAATACATTTATGCTGGCCGCGCTGCTCACAGGATGTAGTCAAAATGCAGTGACTCAAGTTGA
GTCAGGAATTTTAGAGCAACAAATCGAGGTGACAGGTGAGCTCGTGTCGGCCAATACGGTGAGCCTAAAGCCGCCAGCAC
TGCGGCGAGTGTGGCAGTATCAAGTGAAAATGTTGGCACCGGAAGGCAGTGAGGTCAAAAAGGGCGATAGAGTGGCTCAG
CTTGATACTTCAACATTAACCCAAAGGCTTTCTGTGAAAGCGGCAAACTTGGCCACCACGATCCAAGATATCGAAACGTC
TAAATTGCGTAATGCCAAAAAGTTAGAAGAGTTAAAGCTTGAATTGGCTGAAGCTAAAATGACCCAAGAAAAGAGTCAAA
TGAAGGTCGACATTTCAGATGAAACCGTTTCGGTTATCAATCAACAAAAATATCTGAGAGATGCGATTATCGCCAAAGAT
CGGGTCAAATTGATTAATCAGAAAATCCAGCTTGAAATTGAGAGTGCCGAGCAGCGAATGAAGATGCTGGCCGGTGATCA
GCAAAAATTTGGCTCTGAGGTTGCCGGACTCGAAAAGGGGATTAAGTCTTTGACCTTAATTGCTCCGCGCGATGGCATGG
TGGTCTATGGCAATGATCAGCAAGGTAATAAGCTGGCCGAAGGGCAAAACATATTCGGCGGTGACTCGATATTAAGTATT
CCTGATTTGCAGCATATGCAAGTTAATATGACCATCCCAGAAGTCGAAGCGGGCCGAGTCAAACTCGGTCAAAAGCTAAA
GATCCGCCTCGATGCGAATCCCGATAAGAGTTTTGACGGTGAAATTATCGAATTGGGCGCTGTATTTAGAGTAAAAAACC
AAGATGTTCCCTTGGTCATTTTTGACGCTGTCGCCAGTATCGAAGCCCCCGATACTGAGATGATGCGCCCTGGAATGACG
GCCAAAATAAGCATAGATATCGCCAATAACACCCCCGATTTACTATTGTCTCTAGATGCAGTGCATTATGACCGTGGTAA
GGCATATGTATTAAAGCCGGGATTAGTTAGCGACACTAAACAATACGTGGGTCTTGGAGCTATGGGGAAAGAGCGAGTAG
CGATTACCTCAGGGTTAATAGCGGGAGATGAGGTGCTATTGCCATGA

Upstream 100 bases:

>100_bases
ACAGTAACTGGTTTAAAATTTCGATTAAATTTGTTGTAGATGACAGGGTAGAAATTATTCCTGGTATGAGTGTGTTAGTC
GAAACAGGAGTCGCTCCATC

Downstream 100 bases:

>100_bases
TTAACCTAATGGATAAAAACGTAAACGTGCCTGATGAGCGACAAATGAACGCAAGTTTGACGGCTAAGCGGCCTCGATTA
CTCAGTGTTTTGCTCGTCGG

Product: membrane-fusion protein

Products: NA

Alternate protein names: Efflux Transporter RND Family MFP Subunit; Secretion Protein HlyD; Multidrug Resistance Efflux Pump-Like Protein; RND Family Efflux Transporter MFP Subunit; Secretion Protein HlyD Family Protein; HlyD Family Secretion Protein; PAS/PAC Sensor Protein; Periplasmic Component Of Efflux System; Efflux Transporter Rnd Family Mfp Subunit; Membrane-Fusion Protein-Like Protein

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MKMTAINTFMLAALLTGCSQNAVTQVESGILEQQIEVTGELVSANTVSLKPPALRRVWQYQVKMLAPEGSEVKKGDRVAQ
LDTSTLTQRLSVKAANLATTIQDIETSKLRNAKKLEELKLELAEAKMTQEKSQMKVDISDETVSVINQQKYLRDAIIAKD
RVKLINQKIQLEIESAEQRMKMLAGDQQKFGSEVAGLEKGIKSLTLIAPRDGMVVYGNDQQGNKLAEGQNIFGGDSILSI
PDLQHMQVNMTIPEVEAGRVKLGQKLKIRLDANPDKSFDGEIIELGAVFRVKNQDVPLVIFDAVASIEAPDTEMMRPGMT
AKISIDIANNTPDLLLSLDAVHYDRGKAYVLKPGLVSDTKQYVGLGAMGKERVAITSGLIAGDEVLLP

Sequences:

>Translated_388_residues
MKMTAINTFMLAALLTGCSQNAVTQVESGILEQQIEVTGELVSANTVSLKPPALRRVWQYQVKMLAPEGSEVKKGDRVAQ
LDTSTLTQRLSVKAANLATTIQDIETSKLRNAKKLEELKLELAEAKMTQEKSQMKVDISDETVSVINQQKYLRDAIIAKD
RVKLINQKIQLEIESAEQRMKMLAGDQQKFGSEVAGLEKGIKSLTLIAPRDGMVVYGNDQQGNKLAEGQNIFGGDSILSI
PDLQHMQVNMTIPEVEAGRVKLGQKLKIRLDANPDKSFDGEIIELGAVFRVKNQDVPLVIFDAVASIEAPDTEMMRPGMT
AKISIDIANNTPDLLLSLDAVHYDRGKAYVLKPGLVSDTKQYVGLGAMGKERVAITSGLIAGDEVLLP
>Mature_388_residues
MKMTAINTFMLAALLTGCSQNAVTQVESGILEQQIEVTGELVSANTVSLKPPALRRVWQYQVKMLAPEGSEVKKGDRVAQ
LDTSTLTQRLSVKAANLATTIQDIETSKLRNAKKLEELKLELAEAKMTQEKSQMKVDISDETVSVINQQKYLRDAIIAKD
RVKLINQKIQLEIESAEQRMKMLAGDQQKFGSEVAGLEKGIKSLTLIAPRDGMVVYGNDQQGNKLAEGQNIFGGDSILSI
PDLQHMQVNMTIPEVEAGRVKLGQKLKIRLDANPDKSFDGEIIELGAVFRVKNQDVPLVIFDAVASIEAPDTEMMRPGMT
AKISIDIANNTPDLLLSLDAVHYDRGKAYVLKPGLVSDTKQYVGLGAMGKERVAITSGLIAGDEVLLP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42401; Mature: 42401

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMTAINTFMLAALLTGCSQNAVTQVESGILEQQIEVTGELVSANTVSLKPPALRRVWQY
CCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEECCEEEECCHHHHHHHHH
QVKMLAPEGSEVKKGDRVAQLDTSTLTQRLSVKAANLATTIQDIETSKLRNAKKLEELKL
HHEEECCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
ELAEAKMTQEKSQMKVDISDETVSVINQQKYLRDAIIAKDRVKLINQKIQLEIESAEQRM
HHHHHHHHHHHHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEEEHHHHHHH
KMLAGDQQKFGSEVAGLEKGIKSLTLIAPRDGMVVYGNDQQGNKLAEGQNIFGGDSILSI
HHHCCCHHHHHHHHHHHHHCHHHEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCEEEC
PDLQHMQVNMTIPEVEAGRVKLGQKLKIRLDANPDKSFDGEIIELGAVFRVKNQDVPLVI
CCCCEEEEEEECCCCCCCCEECCCEEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCEEE
FDAVASIEAPDTEMMRPGMTAKISIDIANNTPDLLLSLDAVHYDRGKAYVLKPGLVSDTK
EECHHCCCCCCHHHHCCCCEEEEEEEECCCCCCEEEEEEEEEECCCCEEEECCCCCCCCH
QYVGLGAMGKERVAITSGLIAGDEVLLP
HHHCCCCCCCCCEEEEECCCCCCCEECC
>Mature Secondary Structure
MKMTAINTFMLAALLTGCSQNAVTQVESGILEQQIEVTGELVSANTVSLKPPALRRVWQY
CCEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEECCEEEECCHHHHHHHHH
QVKMLAPEGSEVKKGDRVAQLDTSTLTQRLSVKAANLATTIQDIETSKLRNAKKLEELKL
HHEEECCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
ELAEAKMTQEKSQMKVDISDETVSVINQQKYLRDAIIAKDRVKLINQKIQLEIESAEQRM
HHHHHHHHHHHHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEEEHHHHHHH
KMLAGDQQKFGSEVAGLEKGIKSLTLIAPRDGMVVYGNDQQGNKLAEGQNIFGGDSILSI
HHHCCCHHHHHHHHHHHHHCHHHEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCEEEC
PDLQHMQVNMTIPEVEAGRVKLGQKLKIRLDANPDKSFDGEIIELGAVFRVKNQDVPLVI
CCCCEEEEEEECCCCCCCCEECCCEEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCEEE
FDAVASIEAPDTEMMRPGMTAKISIDIANNTPDLLLSLDAVHYDRGKAYVLKPGLVSDTK
EECHHCCCCCCHHHHCCCCEEEEEEEECCCCCCEEEEEEEEEECCCCEEEECCCCCCCCH
QYVGLGAMGKERVAITSGLIAGDEVLLP
HHHCCCCCCCCCEEEEECCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA