| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624326
Identifier: 167624326
GI number: 167624326
Start: 2903516
End: 2904313
Strand: Reverse
Name: 167624326
Synonym: Shal_2403
Alternate gene names: NA
Gene position: 2904313-2903516 (Counterclockwise)
Preceding gene: 167624327
Following gene: 167624324
Centisome position: 55.56
GC content: 43.48
Gene sequence:
>798_bases ATGGCGACAGTTGTACTTGTACGTGGTTTGATGCGTGATAAACGGCATTGGATTGGTTTTGAGCGGATGCTAAAACAGAC AGTATTGGCTAACCATGACGTTATTTCAGTCGATACATTGGGTAACGGTGAGCTTGCCTCTAAAACGAGCCCATTAAATA TTGAGGTATATGCAGAAGATTTATGCTGCAGGCTGCGCAGCGTTGAAGATAAAGACTGCTACCTTGTTGGTTTATCAATG GGAGGAATGATAGCCCTTGAGGCGGCCGCGAGACAGTATGGTGCTAACGGCAACGAAATCGCTCTAAAAATGGCTGACGC CGATGTAAAAATTAGAGGCATAGCGCTGATAAACACCAGTGCCGCAAACCTTTCACCTTGGTTTAAACGTTTTCAATTAC GTGGCTTGCTGTTTGGATTTAAAAGTCGTCTTAAAGGAGCGGGGATCAATGCTATTGAAGCGACAGTGGTTGCGTTAACC AGCTATAAACAAAACCATAATCGCAAACTTGTTCGCAACTGGAGTCGCTATCGCGTAGAGAGAAAAACAAGACTTGTTAA TGTACTACGCCAGTTCTGGGCCTGTAGCCAGTTCATCTGTCCGAAAAAACTGTATGCGCCTGTAGTGATCCTGAGTGGAA CTAAAGATAAGTTGGTCCACCCTGATTGCAGTCAAAAGCTTGCTCAATATTATCAGAGCAAGCTTATTGAATTTGACCAA GCCGGTCATGACTTGAGTTTAGATTCACCCCAAAAGTTATGTGAGGTGCTTATAAAAGCATTTTTACTCGAACATTAG
Upstream 100 bases:
>100_bases GCCTAACTCAAATTGATGTACAACAGATCTTAGAAACAAATATGCGTCAATAGTGCTACTTTTAACCTGTGGGCAAGACA TAGAGTCTAGCGGAGCACTG
Downstream 100 bases:
>100_bases GCCTTTGCCACTACGGTCTGACCGATAGGAGTTAAGCTCAAAATTGCTAACTTAAGGTGCTGCAAGGCAAATGGAATTCC AATGATGGTTACCGCGCAGG
Product: alpha/beta hydrolase fold protein
Products: NA
Alternate protein names: Alpha/Beta Fold Family Hydrolase; Hydrolase; Alpha/Beta Hydrolase Fold Protein; Alpha/Beta Hydrolase Family Protein; Alpha/Beta Fold Superfamily Hydrolase; Hydrolase Alpha/Beta Fold Family; Alpha/Beta Family Hydrolase; Alpha/Beta Superfamily Hydrolase; Hydrolase Or Acyltransferase-Like Protein
Number of amino acids: Translated: 265; Mature: 264
Protein sequence:
>265_residues MATVVLVRGLMRDKRHWIGFERMLKQTVLANHDVISVDTLGNGELASKTSPLNIEVYAEDLCCRLRSVEDKDCYLVGLSM GGMIALEAAARQYGANGNEIALKMADADVKIRGIALINTSAANLSPWFKRFQLRGLLFGFKSRLKGAGINAIEATVVALT SYKQNHNRKLVRNWSRYRVERKTRLVNVLRQFWACSQFICPKKLYAPVVILSGTKDKLVHPDCSQKLAQYYQSKLIEFDQ AGHDLSLDSPQKLCEVLIKAFLLEH
Sequences:
>Translated_265_residues MATVVLVRGLMRDKRHWIGFERMLKQTVLANHDVISVDTLGNGELASKTSPLNIEVYAEDLCCRLRSVEDKDCYLVGLSM GGMIALEAAARQYGANGNEIALKMADADVKIRGIALINTSAANLSPWFKRFQLRGLLFGFKSRLKGAGINAIEATVVALT SYKQNHNRKLVRNWSRYRVERKTRLVNVLRQFWACSQFICPKKLYAPVVILSGTKDKLVHPDCSQKLAQYYQSKLIEFDQ AGHDLSLDSPQKLCEVLIKAFLLEH >Mature_264_residues ATVVLVRGLMRDKRHWIGFERMLKQTVLANHDVISVDTLGNGELASKTSPLNIEVYAEDLCCRLRSVEDKDCYLVGLSMG GMIALEAAARQYGANGNEIALKMADADVKIRGIALINTSAANLSPWFKRFQLRGLLFGFKSRLKGAGINAIEATVVALTS YKQNHNRKLVRNWSRYRVERKTRLVNVLRQFWACSQFICPKKLYAPVVILSGTKDKLVHPDCSQKLAQYYQSKLIEFDQA GHDLSLDSPQKLCEVLIKAFLLEH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29843; Mature: 29712
Theoretical pI: Translated: 9.89; Mature: 9.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATVVLVRGLMRDKRHWIGFERMLKQTVLANHDVISVDTLGNGELASKTSPLNIEVYAED CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEHHH LCCRLRSVEDKDCYLVGLSMGGMIALEAAARQYGANGNEIALKMADADVKIRGIALINTS HHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEEEECC AANLSPWFKRFQLRGLLFGFKSRLKGAGINAIEATVVALTSYKQNHNRKLVRNWSRYRVE CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH RKTRLVNVLRQFWACSQFICPKKLYAPVVILSGTKDKLVHPDCSQKLAQYYQSKLIEFDQ HHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHC AGHDLSLDSPQKLCEVLIKAFLLEH CCCCCCCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure ATVVLVRGLMRDKRHWIGFERMLKQTVLANHDVISVDTLGNGELASKTSPLNIEVYAED HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEHHH LCCRLRSVEDKDCYLVGLSMGGMIALEAAARQYGANGNEIALKMADADVKIRGIALINTS HHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEEEECC AANLSPWFKRFQLRGLLFGFKSRLKGAGINAIEATVVALTSYKQNHNRKLVRNWSRYRVE CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH RKTRLVNVLRQFWACSQFICPKKLYAPVVILSGTKDKLVHPDCSQKLAQYYQSKLIEFDQ HHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHC AGHDLSLDSPQKLCEVLIKAFLLEH CCCCCCCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA