| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624285
Identifier: 167624285
GI number: 167624285
Start: 2858156
End: 2860204
Strand: Reverse
Name: 167624285
Synonym: Shal_2361
Alternate gene names: NA
Gene position: 2860204-2858156 (Counterclockwise)
Preceding gene: 167624286
Following gene: 167624284
Centisome position: 54.72
GC content: 44.75
Gene sequence:
>2049_bases ATGAAAAAGGTTAAAAACGGCTTAAATAAGTCGACGCTCGCTTTGGGGATAGTCGCGGCGCTCGGTTTTGGCATGACAAA CCATGCTAATGCAATCTCATTCAATTGGGGTGAGGTGGAAGGAACATTCGATTCTACTTGGACTGCTGGTGCAAGTTGGC GCGTTGAAGGCAGAGATTGGGATAATCAGATCGGTAAGGTGAATCATCCTCGTTTTGATTGGTCAGGTTACTCTGCTTTT AGCGATACTAAATACAGTTCAGCCGAGATTTGGGCACAACCTGGGTCTTATTCGAGTAATGGCGATTTAGCCGATCTGCT ATATACCCAAGGCGATACCACTGCAGAAATTTTTAAAGGCTTACATGAACTTTCTCTAAAGTATAAGAATTTTGGTGTTT TTGCTCGCGGAATGTATTTCTATGACCGTAAAGCTAATGATGGCGATTATGGTTATAGCAATCCATTAACAGGCAAAGAG TACGATCCTTGTGAAGATAAGAAAGCTTCTGAAGTTCAATGTAAAGATATTCGCCTACTAGATGCTTTTGTTTATGCCGA TTTTGATTTTAACGGTGGTGCAAACCCTCTTTCAATACGAGTGGGTGATCAGGTTGTCTCGTGGGGAGAAAGCACACTGA TTGCACACGGTATTGGTGTCATCAATCCAGTCGATCTGAATATTCTTAATGCGCCTGGTGCTGAATTAAAAGAAGCATTT AGGCCTCAAGGAATGGTTTGGGCGTCTTTTGGTATTACAGATAATTTGTCTGTTGAAGGTTTTTATCAATATGATTGGGA GCCTGTTTGGGTTCCAACACCAGGATCATTTCTTTCTACAAATGATTTTGCAGGTTACGGCGGTTATTACCAAAATGCAC AGTTAGGCTTTAATGCCAACCCTGACATGGATCTTAATTTCCTCCTATCTGAATATAATGCCCTTGTTGGCATGGTCGGG TCGGGTCAGGTTAACTCGAGCGACTTAGCAAGCCTTGCACTCGCTTATCCAACTAAAGCAACATTAGTAGAAGATCCTGC ATCGGCGAGTGATGACGGCCAATGGGGTGTGAAGCTTGGGTATTATGCACCACAACTTGGCGAGACCGAGTTTGGCTTGT ACTACATGAACTATCATAGTCGTCGTCCGCTAATCAGCGGTACCACGGCGAACTTTACCGAAGAAGCTATTGGCCGAGAC CTGCAGCGACTCGGCGGTAAAGCACAGTCTGGCGAAGCCATGACTCGTGAAGATCTGCTAGCGTTAGAGACGTTCTCAAA AGCACAGATAGTATATCCAGAAGATATTCAACTGATGGGCGTTAGCTTTAATACGCTTGTTGGTGATACTTCCGTTGCCG GTGAAATAGCTCACCGCCTTGATGAGCCATTGCAGATTGATGATGTTGAATTGTTGTTTGCCGCAATGCCACAGCAGCTG GCTAATGCAGGTATTCGTCCTGATTTCGATGGTATTTCACAAGTTGAAAACTATGGGCCGGGGGAATACGCCGAAGGCTT TATTCGTCTTGATACCACTCAAGCACAAACTACCTTTACCCATCTATTCGGCCCGACTCTTGGTACCGACAACTTAACTA TGTTGGCTGAGGTTGGTGGTGTGTGGATCCACGATATGCCGAGTCATGATGAGCTTAGACTTAACGGTCCTGGAACATCG CGCTCTGGTGGAAATCCCGACATGCCAGGCATTATTGAAGCCTTACATAATGGCCCTGAGGTTAATCCTTTCCCGACTGA TTTTGCTTGGGGTTATCGTTTAGTGGCTAAAGCTGATTACAACAACGTTTGGGGGGGAGTGAATATTGCGCCACGAGTGA TCTTCTCTCACGACGTTGATGGTATTACGCCTGACCCGATGTTCTTGTTTACTGAGGGTAAAAAATCAGTGGCATTAGGC ATTAACTTTGACTATCAAAGTCGCTGGGGCGCCGATATTTCTTATAACACCTTCTTTGGTGGAGTAGGGACGACCAACTC TTTGGCTGACCGAGATTATGTTTCGTTCAACATTAAGTATTCAATCTAA
Upstream 100 bases:
>100_bases GTGTAAATGCTGTAACAATGGTGTCACCTGTAAGTTAACAGTTTGTTGGCTATCAATTCCTATAACAAAAGAATCCAGCA GGTTACGGAGAGAAGCTAAA
Downstream 100 bases:
>100_bases ATCACAAGGACAATAACAATGAATAAACTTGCGATATTGCCTGTAGCAGTGATGTTTGCCCTAAGTGCTCAAGCGGCATT GGCTAAAGTCTCTGAAGCAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 682; Mature: 682
Protein sequence:
>682_residues MKKVKNGLNKSTLALGIVAALGFGMTNHANAISFNWGEVEGTFDSTWTAGASWRVEGRDWDNQIGKVNHPRFDWSGYSAF SDTKYSSAEIWAQPGSYSSNGDLADLLYTQGDTTAEIFKGLHELSLKYKNFGVFARGMYFYDRKANDGDYGYSNPLTGKE YDPCEDKKASEVQCKDIRLLDAFVYADFDFNGGANPLSIRVGDQVVSWGESTLIAHGIGVINPVDLNILNAPGAELKEAF RPQGMVWASFGITDNLSVEGFYQYDWEPVWVPTPGSFLSTNDFAGYGGYYQNAQLGFNANPDMDLNFLLSEYNALVGMVG SGQVNSSDLASLALAYPTKATLVEDPASASDDGQWGVKLGYYAPQLGETEFGLYYMNYHSRRPLISGTTANFTEEAIGRD LQRLGGKAQSGEAMTREDLLALETFSKAQIVYPEDIQLMGVSFNTLVGDTSVAGEIAHRLDEPLQIDDVELLFAAMPQQL ANAGIRPDFDGISQVENYGPGEYAEGFIRLDTTQAQTTFTHLFGPTLGTDNLTMLAEVGGVWIHDMPSHDELRLNGPGTS RSGGNPDMPGIIEALHNGPEVNPFPTDFAWGYRLVAKADYNNVWGGVNIAPRVIFSHDVDGITPDPMFLFTEGKKSVALG INFDYQSRWGADISYNTFFGGVGTTNSLADRDYVSFNIKYSI
Sequences:
>Translated_682_residues MKKVKNGLNKSTLALGIVAALGFGMTNHANAISFNWGEVEGTFDSTWTAGASWRVEGRDWDNQIGKVNHPRFDWSGYSAF SDTKYSSAEIWAQPGSYSSNGDLADLLYTQGDTTAEIFKGLHELSLKYKNFGVFARGMYFYDRKANDGDYGYSNPLTGKE YDPCEDKKASEVQCKDIRLLDAFVYADFDFNGGANPLSIRVGDQVVSWGESTLIAHGIGVINPVDLNILNAPGAELKEAF RPQGMVWASFGITDNLSVEGFYQYDWEPVWVPTPGSFLSTNDFAGYGGYYQNAQLGFNANPDMDLNFLLSEYNALVGMVG SGQVNSSDLASLALAYPTKATLVEDPASASDDGQWGVKLGYYAPQLGETEFGLYYMNYHSRRPLISGTTANFTEEAIGRD LQRLGGKAQSGEAMTREDLLALETFSKAQIVYPEDIQLMGVSFNTLVGDTSVAGEIAHRLDEPLQIDDVELLFAAMPQQL ANAGIRPDFDGISQVENYGPGEYAEGFIRLDTTQAQTTFTHLFGPTLGTDNLTMLAEVGGVWIHDMPSHDELRLNGPGTS RSGGNPDMPGIIEALHNGPEVNPFPTDFAWGYRLVAKADYNNVWGGVNIAPRVIFSHDVDGITPDPMFLFTEGKKSVALG INFDYQSRWGADISYNTFFGGVGTTNSLADRDYVSFNIKYSI >Mature_682_residues MKKVKNGLNKSTLALGIVAALGFGMTNHANAISFNWGEVEGTFDSTWTAGASWRVEGRDWDNQIGKVNHPRFDWSGYSAF SDTKYSSAEIWAQPGSYSSNGDLADLLYTQGDTTAEIFKGLHELSLKYKNFGVFARGMYFYDRKANDGDYGYSNPLTGKE YDPCEDKKASEVQCKDIRLLDAFVYADFDFNGGANPLSIRVGDQVVSWGESTLIAHGIGVINPVDLNILNAPGAELKEAF RPQGMVWASFGITDNLSVEGFYQYDWEPVWVPTPGSFLSTNDFAGYGGYYQNAQLGFNANPDMDLNFLLSEYNALVGMVG SGQVNSSDLASLALAYPTKATLVEDPASASDDGQWGVKLGYYAPQLGETEFGLYYMNYHSRRPLISGTTANFTEEAIGRD LQRLGGKAQSGEAMTREDLLALETFSKAQIVYPEDIQLMGVSFNTLVGDTSVAGEIAHRLDEPLQIDDVELLFAAMPQQL ANAGIRPDFDGISQVENYGPGEYAEGFIRLDTTQAQTTFTHLFGPTLGTDNLTMLAEVGGVWIHDMPSHDELRLNGPGTS RSGGNPDMPGIIEALHNGPEVNPFPTDFAWGYRLVAKADYNNVWGGVNIAPRVIFSHDVDGITPDPMFLFTEGKKSVALG INFDYQSRWGADISYNTFFGGVGTTNSLADRDYVSFNIKYSI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 74639; Mature: 74639
Theoretical pI: Translated: 4.26; Mature: 4.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKVKNGLNKSTLALGIVAALGFGMTNHANAISFNWGEVEGTFDSTWTAGASWRVEGRDW CCHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCEECCCEEEECCCCC DNQIGKVNHPRFDWSGYSAFSDTKYSSAEIWAQPGSYSSNGDLADLLYTQGDTTAEIFKG CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCHHHHHHH LHELSLKYKNFGVFARGMYFYDRKANDGDYGYSNPLTGKEYDPCEDKKASEVQCKDIRLL HHHHHEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEEE DAFVYADFDFNGGANPLSIRVGDQVVSWGESTLIAHGIGVINPVDLNILNAPGAELKEAF EEEEEEEECCCCCCCEEEEEECCHHHHCCCCEEEECCCCCCCCCCEEEECCCCHHHHHHH RPQGMVWASFGITDNLSVEGFYQYDWEPVWVPTPGSFLSTNDFAGYGGYYQNAQLGFNAN CCCCEEEEECCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCC PDMDLNFLLSEYNALVGMVGSGQVNSSDLASLALAYPTKATLVEDPASASDDGQWGVKLG CCCCHHHHHHHHHHHEEECCCCCCCHHHHHHEEEECCCCCEEEECCCCCCCCCCCCEEEE YYAPQLGETEFGLYYMNYHSRRPLISGTTANFTEEAIGRDLQRLGGKAQSGEAMTREDLL CCCCCCCCCCEEEEEEEECCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHH ALETFSKAQIVYPEDIQLMGVSFNTLVGDTSVAGEIAHRLDEPLQIDDVELLFAAMPQQL HHCCCCCEEEECCCCEEEEEEEHHHEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH ANAGIRPDFDGISQVENYGPGEYAEGFIRLDTTQAQTTFTHLFGPTLGTDNLTMLAEVGG HHCCCCCCCCCHHHHHCCCCCHHCCCEEEEECCCHHHHHHHHHCCCCCCCCEEEEEECCC VWIHDMPSHDELRLNGPGTSRSGGNPDMPGIIEALHNGPEVNPFPTDFAWGYRLVAKADY EEEECCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEEECCC NNVWGGVNIAPRVIFSHDVDGITPDPMFLFTEGKKSVALGINFDYQSRWGADISYNTFFG CCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCEEECEEEC GVGTTNSLADRDYVSFNIKYSI CCCCCCCCCCCCEEEEEEEEEC >Mature Secondary Structure MKKVKNGLNKSTLALGIVAALGFGMTNHANAISFNWGEVEGTFDSTWTAGASWRVEGRDW CCHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCEECCCEEEECCCCC DNQIGKVNHPRFDWSGYSAFSDTKYSSAEIWAQPGSYSSNGDLADLLYTQGDTTAEIFKG CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCHHHHHHH LHELSLKYKNFGVFARGMYFYDRKANDGDYGYSNPLTGKEYDPCEDKKASEVQCKDIRLL HHHHHEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEEE DAFVYADFDFNGGANPLSIRVGDQVVSWGESTLIAHGIGVINPVDLNILNAPGAELKEAF EEEEEEEECCCCCCCEEEEEECCHHHHCCCCEEEECCCCCCCCCCEEEECCCCHHHHHHH RPQGMVWASFGITDNLSVEGFYQYDWEPVWVPTPGSFLSTNDFAGYGGYYQNAQLGFNAN CCCCEEEEECCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCC PDMDLNFLLSEYNALVGMVGSGQVNSSDLASLALAYPTKATLVEDPASASDDGQWGVKLG CCCCHHHHHHHHHHHEEECCCCCCCHHHHHHEEEECCCCCEEEECCCCCCCCCCCCEEEE YYAPQLGETEFGLYYMNYHSRRPLISGTTANFTEEAIGRDLQRLGGKAQSGEAMTREDLL CCCCCCCCCCEEEEEEEECCCCCEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHH ALETFSKAQIVYPEDIQLMGVSFNTLVGDTSVAGEIAHRLDEPLQIDDVELLFAAMPQQL HHCCCCCEEEECCCCEEEEEEEHHHEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH ANAGIRPDFDGISQVENYGPGEYAEGFIRLDTTQAQTTFTHLFGPTLGTDNLTMLAEVGG HHCCCCCCCCCHHHHHCCCCCHHCCCEEEEECCCHHHHHHHHHCCCCCCCCEEEEEECCC VWIHDMPSHDELRLNGPGTSRSGGNPDMPGIIEALHNGPEVNPFPTDFAWGYRLVAKADY EEEECCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEEECCC NNVWGGVNIAPRVIFSHDVDGITPDPMFLFTEGKKSVALGINFDYQSRWGADISYNTFFG CCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCEEECEEEC GVGTTNSLADRDYVSFNIKYSI CCCCCCCCCCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA