| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624257
Identifier: 167624257
GI number: 167624257
Start: 2818204
End: 2819316
Strand: Reverse
Name: 167624257
Synonym: Shal_2333
Alternate gene names: NA
Gene position: 2819316-2818204 (Counterclockwise)
Preceding gene: 167624259
Following gene: 167624256
Centisome position: 53.94
GC content: 41.42
Gene sequence:
>1113_bases ATGTTGAAACTCATTTTACGTACTTTTATTACAGTCTCTTTTCTGTCAGGTTTCTCAACGTTTGTTGCTGCAGCCGAGGT TAAGCAACTCGATGAAGGTGTTGTGTCAATCGCCTCTAGAACGACTGCACTTAGAAGCCAAGGGATCAAGCAAGCCTTTG AAGAAGTTATTTTAAAAAACTCTGGTACTCAGAGTGCACTCTTAAATGAAACGATCAAGAAACAGCTAGGTAATGCTAGC TCACTAATGACTCAATACGGTTATTTTGAAGATGATGGAAAGTTATTCTTAAAAGTTAACTTTGACCATAAACATATTAT TTCACTGTTACGAGAAGCTGGACTACCCGTTTGGGGAAAACAGCGACCCTTGACCTTAGTTTGGTTAGTTATCAATGATA ATGGTCAACGCGAAATAATAAATGATGCGTCGAGAGATCCTAGCCGACAAGTTTTTAATCAAGAGTCAGCGACTCGTGGC GCTCCATTGTTATTCCCGTTAATGGATCTTGATGATTCCATGAAGGTCGGTGTAAATGATATTCGTGGTAACTTCACCGA CAATGTGGCAGATGCTTCTCTGCGCTATCAATCAAATTACTTCATCATGGCGACTATCGAGCCACAAGGAAGTGTTTATC GTTACCAGATGAGTCTTTATCCACGAGAGAAATCAGCGCAATCTCTGCAATTAACGTCTGTTATTAATACGAGTGGAGAA ACCGCCACGATCGATGAGGCCGTTGCGGCCATTGTCGCTGCCACCAGCGAGTACTATGTTGGTCAGTATGCGATAGCCGA CTCAGGAGAGCAGAAAACCACTAAGCTTTCTTTTGCTGACGTAACGGATATGAAGCAGTTAGTTGCTATCGAACGTTATT TAGATCAGCTAAGTGCAATCAAATCGGCAAGTATCGGTCGTATTGAAGGGCAGACGATTGAGTTTAATTTAAGCCTTTTT GGTAATGAAGCCGATCTTCATCGATTAATGGCTCTTGACCCTCGAATTGAAACTGTGACTACGAATAGCCAACAAAACTT GGACTATTCAGCAATCGGTACACAAGTTGAAGCTCATAAAGAGACACAGATCTATTATTGGAAAGGTCAATAG
Upstream 100 bases:
>100_bases GCTTGCTTTAACTATTGCGGTGGCATATCTCTTTATCTCGGCAAAAGTTATTAGAGATGTGATACAATTTTATCTATTGA GCCGTCTTTGAATCTTAAAC
Downstream 100 bases:
>100_bases CTCCCAATCAATTGACACACATGCTACCATGTGTGTCTAATATAGATATATTGCGTCGTTGAGAAGCACCTGAGTGAAGT CAAACTCTCCTTTACAGTTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 370; Mature: 370
Protein sequence:
>370_residues MLKLILRTFITVSFLSGFSTFVAAAEVKQLDEGVVSIASRTTALRSQGIKQAFEEVILKNSGTQSALLNETIKKQLGNAS SLMTQYGYFEDDGKLFLKVNFDHKHIISLLREAGLPVWGKQRPLTLVWLVINDNGQREIINDASRDPSRQVFNQESATRG APLLFPLMDLDDSMKVGVNDIRGNFTDNVADASLRYQSNYFIMATIEPQGSVYRYQMSLYPREKSAQSLQLTSVINTSGE TATIDEAVAAIVAATSEYYVGQYAIADSGEQKTTKLSFADVTDMKQLVAIERYLDQLSAIKSASIGRIEGQTIEFNLSLF GNEADLHRLMALDPRIETVTTNSQQNLDYSAIGTQVEAHKETQIYYWKGQ
Sequences:
>Translated_370_residues MLKLILRTFITVSFLSGFSTFVAAAEVKQLDEGVVSIASRTTALRSQGIKQAFEEVILKNSGTQSALLNETIKKQLGNAS SLMTQYGYFEDDGKLFLKVNFDHKHIISLLREAGLPVWGKQRPLTLVWLVINDNGQREIINDASRDPSRQVFNQESATRG APLLFPLMDLDDSMKVGVNDIRGNFTDNVADASLRYQSNYFIMATIEPQGSVYRYQMSLYPREKSAQSLQLTSVINTSGE TATIDEAVAAIVAATSEYYVGQYAIADSGEQKTTKLSFADVTDMKQLVAIERYLDQLSAIKSASIGRIEGQTIEFNLSLF GNEADLHRLMALDPRIETVTTNSQQNLDYSAIGTQVEAHKETQIYYWKGQ >Mature_370_residues MLKLILRTFITVSFLSGFSTFVAAAEVKQLDEGVVSIASRTTALRSQGIKQAFEEVILKNSGTQSALLNETIKKQLGNAS SLMTQYGYFEDDGKLFLKVNFDHKHIISLLREAGLPVWGKQRPLTLVWLVINDNGQREIINDASRDPSRQVFNQESATRG APLLFPLMDLDDSMKVGVNDIRGNFTDNVADASLRYQSNYFIMATIEPQGSVYRYQMSLYPREKSAQSLQLTSVINTSGE TATIDEAVAAIVAATSEYYVGQYAIADSGEQKTTKLSFADVTDMKQLVAIERYLDQLSAIKSASIGRIEGQTIEFNLSLF GNEADLHRLMALDPRIETVTTNSQQNLDYSAIGTQVEAHKETQIYYWKGQ
Specific function: Unknown
COG id: COG3249
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41161; Mature: 41161
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKLILRTFITVSFLSGFSTFVAAAEVKQLDEGVVSIASRTTALRSQGIKQAFEEVILKN CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SGTQSALLNETIKKQLGNASSLMTQYGYFEDDGKLFLKVNFDHKHIISLLREAGLPVWGK CCCHHHHHHHHHHHHHCCHHHHHHHCCEEECCCEEEEEEECCHHHHHHHHHHCCCCCCCC QRPLTLVWLVINDNGQREIINDASRDPSRQVFNQESATRGAPLLFPLMDLDDSMKVGVND CCCEEEEEEEECCCCCCHHHCCCCCCHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCHH IRGNFTDNVADASLRYQSNYFIMATIEPQGSVYRYQMSLYPREKSAQSLQLTSVINTSGE HCCCCCCCCCCCEEEEECCEEEEEEECCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCC TATIDEAVAAIVAATSEYYVGQYAIADSGEQKTTKLSFADVTDMKQLVAIERYLDQLSAI CCHHHHHHHHHHHHCCHHEEEEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH KSASIGRIEGQTIEFNLSLFGNEADLHRLMALDPRIETVTTNSQQNLDYSAIGTQVEAHK HCCCCCEECCCEEEEEEEEECCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCEEECCC ETQIYYWKGQ CEEEEEEECC >Mature Secondary Structure MLKLILRTFITVSFLSGFSTFVAAAEVKQLDEGVVSIASRTTALRSQGIKQAFEEVILKN CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SGTQSALLNETIKKQLGNASSLMTQYGYFEDDGKLFLKVNFDHKHIISLLREAGLPVWGK CCCHHHHHHHHHHHHHCCHHHHHHHCCEEECCCEEEEEEECCHHHHHHHHHHCCCCCCCC QRPLTLVWLVINDNGQREIINDASRDPSRQVFNQESATRGAPLLFPLMDLDDSMKVGVND CCCEEEEEEEECCCCCCHHHCCCCCCHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCHH IRGNFTDNVADASLRYQSNYFIMATIEPQGSVYRYQMSLYPREKSAQSLQLTSVINTSGE HCCCCCCCCCCCEEEEECCEEEEEEECCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCC TATIDEAVAAIVAATSEYYVGQYAIADSGEQKTTKLSFADVTDMKQLVAIERYLDQLSAI CCHHHHHHHHHHHHCCHHEEEEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH KSASIGRIEGQTIEFNLSLFGNEADLHRLMALDPRIETVTTNSQQNLDYSAIGTQVEAHK HCCCCCEECCCEEEEEEEEECCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCEEECCC ETQIYYWKGQ CEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA