| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is pcaD [H]
Identifier: 167624236
GI number: 167624236
Start: 2796521
End: 2797369
Strand: Direct
Name: pcaD [H]
Synonym: Shal_2312
Alternate gene names: 167624236
Gene position: 2796521-2797369 (Clockwise)
Preceding gene: 167624235
Following gene: 167624237
Centisome position: 53.5
GC content: 43.35
Gene sequence:
>849_bases GTGAACATTACCGACTTAACCAACAATTTTGCAGCAAACAGACACCAACTCAACATTGGCGGTAGCACGCTAAGCTATCT AGATATTGGCCAAGGGCCCGTGTTATTAATGGGCCATAGTTATCTTTGGGATGCCAAGATGTGGGCGCCACAGATAGCCC ACTTGAGTCAAAACTATCGTTGTATAGTGCCAGATCTATGGGGCCATGGTTTATCGGCTAACTTACCTGCAAAAACAAGC AACCTGCGTGATATTGCAGCTCAAATGCTTGAGCTCATGGATAAACTAAACGTAGATAAATTTTCTGTGATAGGCTTATC TGTTGGCGCAATGTGGGGAGCGGAGCTTGCCCTTAAGGCTCCTACGCGAGTACAACACCTCGTCATGTTAGGTAGTTTTA TCGGATATGAGCCAGAGATCACCCGCGATAAATATTATGCCATGCTCGAAGTCATCAAGAATGAACAAATCATTTCAGAC AAAATCATCGACACGATTACGCCTCTTTTTTTTGCAAATCATCCCAACGCCGAATTGGTCGAAGTTTTCAAACAAAAGCT AAAACATTTTGACAGCAGTAATATCGACAACCTATATCAGATAGGCAGAATGATTTTCGGCCGTCGCGATACCATGGATG ATGTGCATTTACTAACACTTCCCTGCTTAATCATGACTGGAGTCGAAGATAAAGCGCGCACCGTATTAGAAGGCTATTTG ATGCATGATGCCATCGATGGTAGCGAATACGTACATATTCCCGATTGCGGCCATATTTCAACCTTAGAGCAAGCCGAATT TATCAATCAACGTCTTAGCAGCTTTTTATCCGCTAATGCACGAGCATAA
Upstream 100 bases:
>100_bases CCACTCGTTAATGAGTATGTGTTACGTGTCGCTCCAGTACCCACACTGAAACAGCCACTCACTGAAACCTGATTTATTCA CACATATTAGAGATAACACT
Downstream 100 bases:
>100_bases ATGAGCCAGGACTCAGCGCTCAAACTCATAGATCTGACTCAGTGCTTAGGCTTCAGCAACACATGTTCAAATCAACCTAA TGACAACGCACAAGCAGGAA
Product: alpha/beta hydrolase fold protein
Products: NA
Alternate protein names: 3-oxoadipate enol-lactonase I; Beta-ketoadipate enol-lactone hydrolase I; Enol-lactone hydrolase I [H]
Number of amino acids: Translated: 282; Mature: 282
Protein sequence:
>282_residues MNITDLTNNFAANRHQLNIGGSTLSYLDIGQGPVLLMGHSYLWDAKMWAPQIAHLSQNYRCIVPDLWGHGLSANLPAKTS NLRDIAAQMLELMDKLNVDKFSVIGLSVGAMWGAELALKAPTRVQHLVMLGSFIGYEPEITRDKYYAMLEVIKNEQIISD KIIDTITPLFFANHPNAELVEVFKQKLKHFDSSNIDNLYQIGRMIFGRRDTMDDVHLLTLPCLIMTGVEDKARTVLEGYL MHDAIDGSEYVHIPDCGHISTLEQAEFINQRLSSFLSANARA
Sequences:
>Translated_282_residues MNITDLTNNFAANRHQLNIGGSTLSYLDIGQGPVLLMGHSYLWDAKMWAPQIAHLSQNYRCIVPDLWGHGLSANLPAKTS NLRDIAAQMLELMDKLNVDKFSVIGLSVGAMWGAELALKAPTRVQHLVMLGSFIGYEPEITRDKYYAMLEVIKNEQIISD KIIDTITPLFFANHPNAELVEVFKQKLKHFDSSNIDNLYQIGRMIFGRRDTMDDVHLLTLPCLIMTGVEDKARTVLEGYL MHDAIDGSEYVHIPDCGHISTLEQAEFINQRLSSFLSANARA >Mature_282_residues MNITDLTNNFAANRHQLNIGGSTLSYLDIGQGPVLLMGHSYLWDAKMWAPQIAHLSQNYRCIVPDLWGHGLSANLPAKTS NLRDIAAQMLELMDKLNVDKFSVIGLSVGAMWGAELALKAPTRVQHLVMLGSFIGYEPEITRDKYYAMLEVIKNEQIISD KIIDTITPLFFANHPNAELVEVFKQKLKHFDSSNIDNLYQIGRMIFGRRDTMDDVHLLTLPCLIMTGVEDKARTVLEGYL MHDAIDGSEYVHIPDCGHISTLEQAEFINQRLSSFLSANARA
Specific function: 3-hydroxyphenylpropionate degradation. [C]
COG id: COG0596
COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000073 - InterPro: IPR012790 [H]
Pfam domain/function: PF00561 Abhydrolase_1 [H]
EC number: =3.1.1.24 [H]
Molecular weight: Translated: 31647; Mature: 31647
Theoretical pI: Translated: 5.93; Mature: 5.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNITDLTNNFAANRHQLNIGGSTLSYLDIGQGPVLLMGHSYLWDAKMWAPQIAHLSQNYR CCCCCCCHHHCCCCEEEEECCCEEEEEECCCCCEEEECCCHHCCHHHHHHHHHHHCCCCE CIVPDLWGHGLSANLPAKTSNLRDIAAQMLELMDKLNVDKFSVIGLSVGAMWGAELALKA EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHCCHHEECC PTRVQHLVMLGSFIGYEPEITRDKYYAMLEVIKNEQIISDKIIDTITPLFFANHPNAELV CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHH EVFKQKLKHFDSSNIDNLYQIGRMIFGRRDTMDDVHLLTLPCLIMTGVEDKARTVLEGYL HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH MHDAIDGSEYVHIPDCGHISTLEQAEFINQRLSSFLSANARA HHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MNITDLTNNFAANRHQLNIGGSTLSYLDIGQGPVLLMGHSYLWDAKMWAPQIAHLSQNYR CCCCCCCHHHCCCCEEEEECCCEEEEEECCCCCEEEECCCHHCCHHHHHHHHHHHCCCCE CIVPDLWGHGLSANLPAKTSNLRDIAAQMLELMDKLNVDKFSVIGLSVGAMWGAELALKA EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHCCHHEECC PTRVQHLVMLGSFIGYEPEITRDKYYAMLEVIKNEQIISDKIIDTITPLFFANHPNAELV CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHH EVFKQKLKHFDSSNIDNLYQIGRMIFGRRDTMDDVHLLTLPCLIMTGVEDKARTVLEGYL HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH MHDAIDGSEYVHIPDCGHISTLEQAEFINQRLSSFLSANARA HHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8181753 [H]