| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is yffB [H]
Identifier: 167624233
GI number: 167624233
Start: 2794269
End: 2794658
Strand: Direct
Name: yffB [H]
Synonym: Shal_2309
Alternate gene names: 167624233
Gene position: 2794269-2794658 (Clockwise)
Preceding gene: 167624232
Following gene: 167624234
Centisome position: 53.46
GC content: 40.51
Gene sequence:
>390_bases ATGACACAATGCAAACAACTTATAAAAACAGATTGGAGTACCCTTTTGACACTTTTCGGAATTAAGAATTGCGATACTGT ACGTAAAGCACGTAAATGGCTTGAAGCTAATCAACTTGAAGTTGCTTTTCATGATTTTCGTGAAGATGGGCTCAGTACAG AGCAAATAGAACAATGGGTCAGTGCAATCGGCTGGGAAGCCTTATTCAATAAGAGAAGTACCAGTTATAGAAATCTTACC GAAACTGAAAAGAATGACATCAATGAGAAGAAGGCTGTAGCCTTGATGGCACTATACCCAACCTTGATCAAGCGCCCCGT TTTAGCGATGAATGGACAAGTCCAGGTGGGTTTTAAAGAAGCTGACTATCGAACGTGGTTCAACCTATGA
Upstream 100 bases:
>100_bases TAATTTTTATTAGGCTTTTTCATCAACGCAAACCAGAGTTCATATCAAGCATTGAATAACACTCAACAAGGGTTTTCCCC CTTGAGCAGAGCCAAAAGCA
Downstream 100 bases:
>100_bases GCCAAAATACAGACTCTCCAGTACTTTCATTAGCCAAAGACCTTATTTCTCGTCAATCGGTCACACCTTTAGATGAAGGT TGCCAGCAACTCATGGCTGA
Product: arsenate reductase-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 129; Mature: 128
Protein sequence:
>129_residues MTQCKQLIKTDWSTLLTLFGIKNCDTVRKARKWLEANQLEVAFHDFREDGLSTEQIEQWVSAIGWEALFNKRSTSYRNLT ETEKNDINEKKAVALMALYPTLIKRPVLAMNGQVQVGFKEADYRTWFNL
Sequences:
>Translated_129_residues MTQCKQLIKTDWSTLLTLFGIKNCDTVRKARKWLEANQLEVAFHDFREDGLSTEQIEQWVSAIGWEALFNKRSTSYRNLT ETEKNDINEKKAVALMALYPTLIKRPVLAMNGQVQVGFKEADYRTWFNL >Mature_128_residues TQCKQLIKTDWSTLLTLFGIKNCDTVRKARKWLEANQLEVAFHDFREDGLSTEQIEQWVSAIGWEALFNKRSTSYRNLTE TEKNDINEKKAVALMALYPTLIKRPVLAMNGQVQVGFKEADYRTWFNL
Specific function: Unknown
COG id: COG1393
COG function: function code P; Arsenate reductase and related proteins, glutaredoxin family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ArsC family [H]
Homologues:
Organism=Escherichia coli, GI1788815, Length=116, Percent_Identity=46.551724137931, Blast_Score=121, Evalue=2e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006660 - InterPro: IPR012336 - InterPro: IPR012335 - InterPro: IPR006504 [H]
Pfam domain/function: PF03960 ArsC [H]
EC number: NA
Molecular weight: Translated: 15048; Mature: 14917
Theoretical pI: Translated: 8.71; Mature: 8.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQCKQLIKTDWSTLLTLFGIKNCDTVRKARKWLEANQLEVAFHDFREDGLSTEQIEQWV CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH SAIGWEALFNKRSTSYRNLTETEKNDINEKKAVALMALYPTLIKRPVLAMNGQVQVGFKE HHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHCCCEEEEEEEC ADYRTWFNL CCCHHHCCC >Mature Secondary Structure TQCKQLIKTDWSTLLTLFGIKNCDTVRKARKWLEANQLEVAFHDFREDGLSTEQIEQWV HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH SAIGWEALFNKRSTSYRNLTETEKNDINEKKAVALMALYPTLIKRPVLAMNGQVQVGFKE HHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHCCCEEEEEEEC ADYRTWFNL CCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1644752; 9205837; 9278503; 10493123 [H]