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The map label for this gene is ycbB [H]

Identifier: 167624211

GI number: 167624211

Start: 2769167

End: 2770501

Strand: Reverse

Name: ycbB [H]

Synonym: Shal_2287

Alternate gene names: 167624211

Gene position: 2770501-2769167 (Counterclockwise)

Preceding gene: 167624219

Following gene: 167624210

Centisome position: 53.0

GC content: 40.3

Gene sequence:

>1335_bases
TTGTTAAGCAGACTTAAATTGGTTGTATACCATCTACTTATTAGCCTTCTAATAATACTTTTTCCGGCGCAAGTCCGTGC
GGAACCCTCTTTTAATGAGATTACCCGCAACTCTGAAGCCTCTCGCCAACTGAGGGCGTTAGCTTTCGACCTTAATGCTG
GTGAAAGTGTTAATGAGTTAATGAATATGGTTAATTTAGCAAGACTTTTAGATAGGCAAGTTTTTTGGGGGAGCTCTGAG
CATCAATCCTTATCTGTTGAACAGTACTTGAATTTAGTTGAGCGTAAGGACATCCAGAGTTTAAGGAAGTTAATCAAGCA
CTATAGGTCGTTAGAGCGTTATCAATGGCCGACTGTAGCCCCTATGGAACTAAGGTTGGGCTTAAGAACGAAAGAGGTCG
CAAAACTCAGGTGGATATTGACTCAAGTTGGAGATATTACACCTTACTCTATACCAGCCTACCGCGAGAGCATTTTTGAC
CCGAGTGTTGAAGCGGGCCTAAAATTATTCCAAAGAAGACATGGCCATGCTGTTGATGGCAAGTTGGGATCCCAGACTTT
ACTATCGCTTAATACAGAGCCATCTATAAGAGTGGCTCAGCTACAGAATGCTTTGAAGCAGAGGTTGAAAAGGTTCGATG
AAGCAAAAGATTATGTTTTGGTTAATCTAATGGATCATACCTTACGTATTACAAAAAACGGTGTAGAGCAGCTAGTTATG
CCGGTAATTGTGGGTAAACCTACCAGTAAAACGCCTGAGTTAAACACCACGATAAGTGTCATTACGGTGAACCCATCCTG
GACACCACCAGCGAGTATTATTTACCAAGATATTCTTCAAAGCGTTGATAAACAGCCCAATTATCTAAGAAATAATGATT
TCGCATTTAAGAGTAATGAGACTAAGCATATTGACCATAATGTGGCTGGGATGGATCCAAAGAGTTTAAAAAACAAGTTA
AAGAAAAGTGTACTTGTTCAACTTCCTGGTACAAAAAATGCGCTGGGGAAGTATCGCTTTACGATCCCTAATTCAGATGC
GATTTTTTTGCATGATACACCAAGTAAGCATCTGTTTAAAAGGCAAAATAGAGCTCTAAGTCACGGTTGTATCAGGCTTT
CTCAACCCGCACTTTTTGCACAGTATCTAATTAATAAGGAGCCTGCAGAGACAAGACTCAAGTTTAAAAACGCAGTAAAA
AGTAAACAGACCAGGCACTTTCGTCTCACGAGTCAGCTTTCAATCGATGTGATTTATCAAACTGTATGGATTGATAAGGA
TGGGAGCTTACAGGTAAGAGGTACTATATTGGACAAAGGAGCGAAAAATGGATAG

Upstream 100 bases:

>100_bases
TTCACTGAAACTGGGACTTTGTTTTTTGACTAGTCTCATTCTTTATTCTGTTTCGGCTTCATGATTGTTAATTCTTTTAT
TGTGTTAGGTAGGAGTCCAC

Downstream 100 bases:

>100_bases
TTTTTGTCATGATAATGCAACGTTAGCAAAGTTTATACGCAAAGAGAAGAACGCCAGAATGAAGCTTAAGTTGTTGGCTG
TGTTACATTTTCAAGATGGA

Product: peptidoglycan-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 444; Mature: 444

Protein sequence:

>444_residues
MLSRLKLVVYHLLISLLIILFPAQVRAEPSFNEITRNSEASRQLRALAFDLNAGESVNELMNMVNLARLLDRQVFWGSSE
HQSLSVEQYLNLVERKDIQSLRKLIKHYRSLERYQWPTVAPMELRLGLRTKEVAKLRWILTQVGDITPYSIPAYRESIFD
PSVEAGLKLFQRRHGHAVDGKLGSQTLLSLNTEPSIRVAQLQNALKQRLKRFDEAKDYVLVNLMDHTLRITKNGVEQLVM
PVIVGKPTSKTPELNTTISVITVNPSWTPPASIIYQDILQSVDKQPNYLRNNDFAFKSNETKHIDHNVAGMDPKSLKNKL
KKSVLVQLPGTKNALGKYRFTIPNSDAIFLHDTPSKHLFKRQNRALSHGCIRLSQPALFAQYLINKEPAETRLKFKNAVK
SKQTRHFRLTSQLSIDVIYQTVWIDKDGSLQVRGTILDKGAKNG

Sequences:

>Translated_444_residues
MLSRLKLVVYHLLISLLIILFPAQVRAEPSFNEITRNSEASRQLRALAFDLNAGESVNELMNMVNLARLLDRQVFWGSSE
HQSLSVEQYLNLVERKDIQSLRKLIKHYRSLERYQWPTVAPMELRLGLRTKEVAKLRWILTQVGDITPYSIPAYRESIFD
PSVEAGLKLFQRRHGHAVDGKLGSQTLLSLNTEPSIRVAQLQNALKQRLKRFDEAKDYVLVNLMDHTLRITKNGVEQLVM
PVIVGKPTSKTPELNTTISVITVNPSWTPPASIIYQDILQSVDKQPNYLRNNDFAFKSNETKHIDHNVAGMDPKSLKNKL
KKSVLVQLPGTKNALGKYRFTIPNSDAIFLHDTPSKHLFKRQNRALSHGCIRLSQPALFAQYLINKEPAETRLKFKNAVK
SKQTRHFRLTSQLSIDVIYQTVWIDKDGSLQVRGTILDKGAKNG
>Mature_444_residues
MLSRLKLVVYHLLISLLIILFPAQVRAEPSFNEITRNSEASRQLRALAFDLNAGESVNELMNMVNLARLLDRQVFWGSSE
HQSLSVEQYLNLVERKDIQSLRKLIKHYRSLERYQWPTVAPMELRLGLRTKEVAKLRWILTQVGDITPYSIPAYRESIFD
PSVEAGLKLFQRRHGHAVDGKLGSQTLLSLNTEPSIRVAQLQNALKQRLKRFDEAKDYVLVNLMDHTLRITKNGVEQLVM
PVIVGKPTSKTPELNTTISVITVNPSWTPPASIIYQDILQSVDKQPNYLRNNDFAFKSNETKHIDHNVAGMDPKSLKNKL
KKSVLVQLPGTKNALGKYRFTIPNSDAIFLHDTPSKHLFKRQNRALSHGCIRLSQPALFAQYLINKEPAETRLKFKNAVK
SKQTRHFRLTSQLSIDVIYQTVWIDKDGSLQVRGTILDKGAKNG

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=289, Percent_Identity=32.1799307958478, Blast_Score=149, Evalue=3e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 50660; Mature: 50660

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSRLKLVVYHLLISLLIILFPAQVRAEPSFNEITRNSEASRQLRALAFDLNAGESVNEL
CCHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHCCCHHHHHHHHHEEECCCCCHHHHH
MNMVNLARLLDRQVFWGSSEHQSLSVEQYLNLVERKDIQSLRKLIKHYRSLERYQWPTVA
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PMELRLGLRTKEVAKLRWILTQVGDITPYSIPAYRESIFDPSVEAGLKLFQRRHGHAVDG
CHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCC
KLGSQTLLSLNTEPSIRVAQLQNALKQRLKRFDEAKDYVLVNLMDHTLRITKNGVEQLVM
CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHH
PVIVGKPTSKTPELNTTISVITVNPSWTPPASIIYQDILQSVDKQPNYLRNNDFAFKSNE
HHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEECCCC
TKHIDHNVAGMDPKSLKNKLKKSVLVQLPGTKNALGKYRFTIPNSDAIFLHDTPSKHLFK
CCCCCCCCCCCCHHHHHHHHHHHEEEECCCCCCCCCCEEEECCCCCEEEEECCCHHHHHH
RQNRALSHGCIRLSQPALFAQYLINKEPAETRLKFKNAVKSKQTRHFRLTSQLSIDVIYQ
HHHHHHHHCCEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEHHHCEEEEEEE
TVWIDKDGSLQVRGTILDKGAKNG
EEEECCCCCEEEEEEEECCCCCCC
>Mature Secondary Structure
MLSRLKLVVYHLLISLLIILFPAQVRAEPSFNEITRNSEASRQLRALAFDLNAGESVNEL
CCHHHHHHHHHHHHHHHHHHCCHHHCCCCCHHHHHCCCHHHHHHHHHEEECCCCCHHHHH
MNMVNLARLLDRQVFWGSSEHQSLSVEQYLNLVERKDIQSLRKLIKHYRSLERYQWPTVA
HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PMELRLGLRTKEVAKLRWILTQVGDITPYSIPAYRESIFDPSVEAGLKLFQRRHGHAVDG
CHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCC
KLGSQTLLSLNTEPSIRVAQLQNALKQRLKRFDEAKDYVLVNLMDHTLRITKNGVEQLVM
CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHH
PVIVGKPTSKTPELNTTISVITVNPSWTPPASIIYQDILQSVDKQPNYLRNNDFAFKSNE
HHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEECCCC
TKHIDHNVAGMDPKSLKNKLKKSVLVQLPGTKNALGKYRFTIPNSDAIFLHDTPSKHLFK
CCCCCCCCCCCCHHHHHHHHHHHEEEECCCCCCCCCCEEEECCCCCEEEEECCCHHHHHH
RQNRALSHGCIRLSQPALFAQYLINKEPAETRLKFKNAVKSKQTRHFRLTSQLSIDVIYQ
HHHHHHHHCCEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEHHHCEEEEEEE
TVWIDKDGSLQVRGTILDKGAKNG
EEEECCCCCEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]