| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624115
Identifier: 167624115
GI number: 167624115
Start: 2650866
End: 2653292
Strand: Reverse
Name: 167624115
Synonym: Shal_2191
Alternate gene names: NA
Gene position: 2653292-2650866 (Counterclockwise)
Preceding gene: 167624116
Following gene: 167624114
Centisome position: 50.76
GC content: 38.07
Gene sequence:
>2427_bases ATGAAGGAAATTCAAGAAAATTTGACATTATTTATTTCGGAACAAAAAAGTTATTTTGAAACAGTACTAGCCCCGAATGA AAACAACCTAAAATGGGGTGAAGCATGGATATATAATAGGTCAAGTAAGGGGTTTCTTATTGGCCCTACCAACGCAGGTG TTAACTTTAAGGAAATCCTTATTACTCGCTCGAAAGCTTTGTTCCGAGAGGATGAAAGCTACGAACATATCGTTATCGAG GATGGTAAAACCATTCTAATTGATACGCTGTTTTCTGATTTTACTCAGGCATTTTTAGTTTATAAGCTTAGACAATCTGG CAAGTACCCTAGCGCAGCAAGTCTGGTTGCCCCTTCCCTACTTTTAAAGCGCATTTATGTTCGTTTGTTAATGTCAGGAG TCAAACCATCGCCTTGCAATATATCGTCAGAAACACTTAATGATACTGCTGAATTGCTGGCTACGTTTCGCAAACAAAGT ACATTAGCGGACGATCAAACCTATTTAAACGGTATTGCGGAAGTCCTTCGCAAAAAACAAATTACCTATAGCGAACCTGA GTTTATGGTTACGGTTAAACGTCCTCAACGAGCAAGTACCAAGAAGGTTAGAGAGGCTGAATTTGCTGAGGGGCTTGGGG ATGAGGAAAATGAAAAGCTAGTTGAGATCCAGGATTTTCTTAATGTTGTAAGTCTTCGAAATCTTGTCCAAAAGGATAGC GAAAAAATAATGTTGAATATGACATTGTTATTATTTGTTACAGCTTGGCGATTTGAAGAATTATCCGGCATAACCATTAA TGCATTGAAAAGGCTAGAAGTTGAAGATGAACAAGTTCGTAAGTTACTTAAAAAACGTGGCTTGCATACCTATTATCTAG GTATCGTTTATCAGGGAAAAAAAGGTGCTGGAATGCGTACTCACTGGGTTGAGCCCCTTGCAATAGATTTGGTTGAATTC ATTTTCAAGGATACTATAAAGCTAACAAAAAATTTAAGAAATCAGGTTGTTAATTGTCGTGGTAATAACTTTAAAACACT ACTCCCTCAAGAGCTAGTCCCTAAAGAATCAACCGTTGTTAATCTAAATGAAGCAGAAATTGAGTTAGCAGATGTAGTTG CACACATTTATGAGTCCACCTCGGATAGTATTAGGTATTTTAATGATTTAAAGCGTTTTGCTAAAGAAAAACTAAGAAAA GCTGGCTTTTTACCTCATCGAATCGTTAAAAATCGCAGAAAACGCGAAGATCAATTTTATACGCTTAAACAAATTGATGA TTTTTTAAAGCAGACCATAACTAAATCTAAAGAGCTTTCCGCAGACATGATTTACCGTGTGCGGGACTCTTCAAATGACT ACTCCTACGATGTCGAATACGAAAAACTTTTATTCATTACGCCAGTAGGATCTACTGCATTAAATTACTCTGGCATGATC AAGCCATTAGCAACACCAATTTGGTATCGATATTTATCTGCATATTTGGGAATGGGTATTAACCGCAACACATCTATTTT TACTCGTTATAATCTAAAAACAAAAAATGGCGAATTCACCAAGATTAATACCCATATGCCCCGCCATAATAAAAACACCT TCTTAGCAATAGCAGATGTCTCTGAACATCTACAGGCTATGGTCATGGGTCGTGCTGACATCAAACAAAACGAAAGATAC CAGCATCTTGCGATTGAAGAACTAGCATTAACTACGGACATAGTTTCTTACCATCAGGACAATTCCTGTACTGCTATCTC ATTGAGTCCAACTGGCGTTGATCAGGTAAAAAACACTGGTATCATTGGCTTAAATCCTGACCTTAAACTTGAAAACGCGC TAGCGCAAAACCTACATACATTTACAACAGAGCGCGACAGAACTTCGTTCATCACTGATATGCTTGATGATATTGATCTG AATATCTTTGAAGAGTTTTCGGATGAACTTGCTGCATTTCAAAACGATAATGAGAAGAGGGATATTATTCGAGCACACTC AGACCTATCCCCATTGGCCTTCGGTAGCTGTATGCGCAAAATTTCTGTAATCGAGTGTCCCTTTAATATTATGTGTCAAG ATGGTACCGCCTGCCCGTACCATACTCTAACAGGACGTGCTGATGAGGCTGACAAGGTAGCGTCTTTATTAAAGAGTATT GAATCCGAAATCGAGAAGATCAACTATTTAGAAATCATAGCACGCGACGAGGCGGACGAACTCCTAGAGGTTTTAAACGC TCGGAAAGAGAATGTTAAAATGCTGAGTGAACAAAGTCAGTCCTTTGAAGCTAAAAAAATACCAGTTAATCTACAGGAAT ATGATGCCAAAAAGAAACCAATTCGGTTAGCGACGTTATTTGCAGTTGAGCATCGAACTAATGAAAAAAGAGCTGTGTTA GAAAAGCTGTCAAAGCCTAGTGAGTAA
Upstream 100 bases:
>100_bases CAAACAAATCTGGCTACGAAAATAGTCCTATGATCCACACCGCGACGGACGCCAGACACGAGGTTAAGTTGGTTATAAAT CGCCTTCAAGGAGGTTTGTC
Downstream 100 bases:
>100_bases CTAAACTAACGACTAAACAGCAGAAGTAATCTTATATATTGTGTTAGGGAAACGTAGTATTTCCAACACAATTTACTGGA AATTAAAAATGAGGAACTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 808; Mature: 808
Protein sequence:
>808_residues MKEIQENLTLFISEQKSYFETVLAPNENNLKWGEAWIYNRSSKGFLIGPTNAGVNFKEILITRSKALFREDESYEHIVIE DGKTILIDTLFSDFTQAFLVYKLRQSGKYPSAASLVAPSLLLKRIYVRLLMSGVKPSPCNISSETLNDTAELLATFRKQS TLADDQTYLNGIAEVLRKKQITYSEPEFMVTVKRPQRASTKKVREAEFAEGLGDEENEKLVEIQDFLNVVSLRNLVQKDS EKIMLNMTLLLFVTAWRFEELSGITINALKRLEVEDEQVRKLLKKRGLHTYYLGIVYQGKKGAGMRTHWVEPLAIDLVEF IFKDTIKLTKNLRNQVVNCRGNNFKTLLPQELVPKESTVVNLNEAEIELADVVAHIYESTSDSIRYFNDLKRFAKEKLRK AGFLPHRIVKNRRKREDQFYTLKQIDDFLKQTITKSKELSADMIYRVRDSSNDYSYDVEYEKLLFITPVGSTALNYSGMI KPLATPIWYRYLSAYLGMGINRNTSIFTRYNLKTKNGEFTKINTHMPRHNKNTFLAIADVSEHLQAMVMGRADIKQNERY QHLAIEELALTTDIVSYHQDNSCTAISLSPTGVDQVKNTGIIGLNPDLKLENALAQNLHTFTTERDRTSFITDMLDDIDL NIFEEFSDELAAFQNDNEKRDIIRAHSDLSPLAFGSCMRKISVIECPFNIMCQDGTACPYHTLTGRADEADKVASLLKSI ESEIEKINYLEIIARDEADELLEVLNARKENVKMLSEQSQSFEAKKIPVNLQEYDAKKKPIRLATLFAVEHRTNEKRAVL EKLSKPSE
Sequences:
>Translated_808_residues MKEIQENLTLFISEQKSYFETVLAPNENNLKWGEAWIYNRSSKGFLIGPTNAGVNFKEILITRSKALFREDESYEHIVIE DGKTILIDTLFSDFTQAFLVYKLRQSGKYPSAASLVAPSLLLKRIYVRLLMSGVKPSPCNISSETLNDTAELLATFRKQS TLADDQTYLNGIAEVLRKKQITYSEPEFMVTVKRPQRASTKKVREAEFAEGLGDEENEKLVEIQDFLNVVSLRNLVQKDS EKIMLNMTLLLFVTAWRFEELSGITINALKRLEVEDEQVRKLLKKRGLHTYYLGIVYQGKKGAGMRTHWVEPLAIDLVEF IFKDTIKLTKNLRNQVVNCRGNNFKTLLPQELVPKESTVVNLNEAEIELADVVAHIYESTSDSIRYFNDLKRFAKEKLRK AGFLPHRIVKNRRKREDQFYTLKQIDDFLKQTITKSKELSADMIYRVRDSSNDYSYDVEYEKLLFITPVGSTALNYSGMI KPLATPIWYRYLSAYLGMGINRNTSIFTRYNLKTKNGEFTKINTHMPRHNKNTFLAIADVSEHLQAMVMGRADIKQNERY QHLAIEELALTTDIVSYHQDNSCTAISLSPTGVDQVKNTGIIGLNPDLKLENALAQNLHTFTTERDRTSFITDMLDDIDL NIFEEFSDELAAFQNDNEKRDIIRAHSDLSPLAFGSCMRKISVIECPFNIMCQDGTACPYHTLTGRADEADKVASLLKSI ESEIEKINYLEIIARDEADELLEVLNARKENVKMLSEQSQSFEAKKIPVNLQEYDAKKKPIRLATLFAVEHRTNEKRAVL EKLSKPSE >Mature_808_residues MKEIQENLTLFISEQKSYFETVLAPNENNLKWGEAWIYNRSSKGFLIGPTNAGVNFKEILITRSKALFREDESYEHIVIE DGKTILIDTLFSDFTQAFLVYKLRQSGKYPSAASLVAPSLLLKRIYVRLLMSGVKPSPCNISSETLNDTAELLATFRKQS TLADDQTYLNGIAEVLRKKQITYSEPEFMVTVKRPQRASTKKVREAEFAEGLGDEENEKLVEIQDFLNVVSLRNLVQKDS EKIMLNMTLLLFVTAWRFEELSGITINALKRLEVEDEQVRKLLKKRGLHTYYLGIVYQGKKGAGMRTHWVEPLAIDLVEF IFKDTIKLTKNLRNQVVNCRGNNFKTLLPQELVPKESTVVNLNEAEIELADVVAHIYESTSDSIRYFNDLKRFAKEKLRK AGFLPHRIVKNRRKREDQFYTLKQIDDFLKQTITKSKELSADMIYRVRDSSNDYSYDVEYEKLLFITPVGSTALNYSGMI KPLATPIWYRYLSAYLGMGINRNTSIFTRYNLKTKNGEFTKINTHMPRHNKNTFLAIADVSEHLQAMVMGRADIKQNERY QHLAIEELALTTDIVSYHQDNSCTAISLSPTGVDQVKNTGIIGLNPDLKLENALAQNLHTFTTERDRTSFITDMLDDIDL NIFEEFSDELAAFQNDNEKRDIIRAHSDLSPLAFGSCMRKISVIECPFNIMCQDGTACPYHTLTGRADEADKVASLLKSI ESEIEKINYLEIIARDEADELLEVLNARKENVKMLSEQSQSFEAKKIPVNLQEYDAKKKPIRLATLFAVEHRTNEKRAVL EKLSKPSE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 92616; Mature: 92616
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKEIQENLTLFISEQKSYFETVLAPNENNLKWGEAWIYNRSSKGFLIGPTNAGVNFKEIL CCCHHCCCEEEEECHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCHHHHH ITRSKALFREDESYEHIVIEDGKTILIDTLFSDFTQAFLVYKLRQSGKYPSAASLVAPSL HHHHHHHHCCCCCCCEEEEECCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH LLKRIYVRLLMSGVKPSPCNISSETLNDTAELLATFRKQSTLADDQTYLNGIAEVLRKKQ HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC ITYSEPEFMVTVKRPQRASTKKVREAEFAEGLGDEENEKLVEIQDFLNVVSLRNLVQKDS CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC EKIMLNMTLLLFVTAWRFEELSGITINALKRLEVEDEQVRKLLKKRGLHTYYLGIVYQGK CCEEHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCEEEEEEEEEECC KGAGMRTHWVEPLAIDLVEFIFKDTIKLTKNLRNQVVNCRGNNFKTLLPQELVPKESTVV CCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHCCCCCEEE NLNEAEIELADVVAHIYESTSDSIRYFNDLKRFAKEKLRKAGFLPHRIVKNRRKREDQFY ECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHE TLKQIDDFLKQTITKSKELSADMIYRVRDSSNDYSYDVEYEKLLFITPVGSTALNYSGMI EHHHHHHHHHHHHHHHHCCCHHHEEEEECCCCCCEEEEEEEEEEEEEECCCHHCCCCCCH KPLATPIWYRYLSAYLGMGINRNTSIFTRYNLKTKNGEFTKINTHMPRHNKNTFLAIADV HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCCCCCEEEEECH SEHLQAMVMGRADIKQNERYQHLAIEELALTTDIVSYHQDNSCTAISLSPTGVDQVKNTG HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHCCCC IIGLNPDLKLENALAQNLHTFTTERDRTSFITDMLDDIDLNIFEEFSDELAAFQNDNEKR EEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHH DIIRAHSDLSPLAFGSCMRKISVIECPFNIMCQDGTACPYHTLTGRADEADKVASLLKSI HHHHHCCCCCHHHHHHHHHHHEEEECCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH ESEIEKINYLEIIARDEADELLEVLNARKENVKMLSEQSQSFEAKKIPVNLQEYDAKKKP HHHHHHCCHHHEEECCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCC IRLATLFAVEHRTNEKRAVLEKLSKPSE EEEEEEEEHHHCCCHHHHHHHHHCCCCC >Mature Secondary Structure MKEIQENLTLFISEQKSYFETVLAPNENNLKWGEAWIYNRSSKGFLIGPTNAGVNFKEIL CCCHHCCCEEEEECHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCHHHHH ITRSKALFREDESYEHIVIEDGKTILIDTLFSDFTQAFLVYKLRQSGKYPSAASLVAPSL HHHHHHHHCCCCCCCEEEEECCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH LLKRIYVRLLMSGVKPSPCNISSETLNDTAELLATFRKQSTLADDQTYLNGIAEVLRKKQ HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC ITYSEPEFMVTVKRPQRASTKKVREAEFAEGLGDEENEKLVEIQDFLNVVSLRNLVQKDS CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC EKIMLNMTLLLFVTAWRFEELSGITINALKRLEVEDEQVRKLLKKRGLHTYYLGIVYQGK CCEEHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHCCCEEEEEEEEEECC KGAGMRTHWVEPLAIDLVEFIFKDTIKLTKNLRNQVVNCRGNNFKTLLPQELVPKESTVV CCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHCCCCCEEE NLNEAEIELADVVAHIYESTSDSIRYFNDLKRFAKEKLRKAGFLPHRIVKNRRKREDQFY ECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHE TLKQIDDFLKQTITKSKELSADMIYRVRDSSNDYSYDVEYEKLLFITPVGSTALNYSGMI EHHHHHHHHHHHHHHHHCCCHHHEEEEECCCCCCEEEEEEEEEEEEEECCCHHCCCCCCH KPLATPIWYRYLSAYLGMGINRNTSIFTRYNLKTKNGEFTKINTHMPRHNKNTFLAIADV HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCCCCCCEEEEECH SEHLQAMVMGRADIKQNERYQHLAIEELALTTDIVSYHQDNSCTAISLSPTGVDQVKNTG HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHCCCC IIGLNPDLKLENALAQNLHTFTTERDRTSFITDMLDDIDLNIFEEFSDELAAFQNDNEKR EEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHH DIIRAHSDLSPLAFGSCMRKISVIECPFNIMCQDGTACPYHTLTGRADEADKVASLLKSI HHHHHCCCCCHHHHHHHHHHHEEEECCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH ESEIEKINYLEIIARDEADELLEVLNARKENVKMLSEQSQSFEAKKIPVNLQEYDAKKKP HHHHHHCCHHHEEECCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCC IRLATLFAVEHRTNEKRAVLEKLSKPSE EEEEEEEEHHHCCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA