| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624109
Identifier: 167624109
GI number: 167624109
Start: 2643546
End: 2645762
Strand: Direct
Name: 167624109
Synonym: Shal_2185
Alternate gene names: NA
Gene position: 2643546-2645762 (Clockwise)
Preceding gene: 167624105
Following gene: 167624110
Centisome position: 50.58
GC content: 40.69
Gene sequence:
>2217_bases ATGTTTAAGAACATAAAGTCTATAAAAAACTTCGGTATCTTCAAGGATGCCAACACTAACGCTGGTCAACCTTTCTATCA ATTTAACTTATTCTATGGTTTTAATTATTCTGGAAAGACCACGCTTTCACGTGTTTTCCTTGCAATGCAGCTTGGTGAAA TACCAGAAGGCTTCACAGGGGCATCTTTTGAAGTCGATTGTCACGAAGCTAGCTCTATCAAGAGTAACAACTTACAAAAA GTAGAAAACCTACGTGTTTTCAATTCAGATTACATCGCTAAAAACGTTAATTTTGATGAATCAAGCGTCAGCCCTGTGTT GATCGTAGGTGAACGTAACATCGAACTAGAAACAGAACTTCAAGGATTGGAAGAGGTTATCCCTACAAAGGAAGTTAATC GAGATCAAAACACAGGATTCGCAGCAAGCAAAGAAAAAGAAAAAAACAATCGTTTAACTGAAGTAGGTCGAAACGTTGCG GTATTGAGTATTCTAGGTCGGTCTACATTCAACGCTTCAAGCGTAAGAACCATGCTTGCATCTGCTGAAGCAAGTCATGA TCTAACACCAGAACAAATGAGTGCTTACATTGATACAGCGAGAGCCAGTGCTGTATCAAGCGTACCTAAAGTTAAACTTA GCACCCCAGAAATGAAAGATATTTTGGGTGAAATTGAATCAATCATGGCGACCTCAGTAACACAGACAACTATTGCAGAG TTGGATGCAGATAAAAGCCTTAGAAGTTGGGTTGAAGAAGGGATAGAGCGTAACGCTGGACACACCACCTGCCAGTTCTG TCACAACACGATTAGTCAGGCAAGAATTGATGAGTTAAATGCATATTTTTCGGAAGCGTACAAAGACCTTAGCCAAAGGA TTGATGTTGCTATCGCTTCGGTTCAATCACAAGCATTCACATCAAGTATTCCAGATACCAGTCAACTTTATCCAGATCTA CAGAAAGGTTTTGACGAATTAAGAATACAAATCCAGCCAATCGATGACTCTGTCGAAGAACTAAAAACGTCACTGGTTAA GTTACTTACTGACAAGAAAGAGCACATGTCTGAGGTACTTCCATTTAACGCATCAGACTATCCTTTACCGTTAGTTACAG ACTTGATGGAGCAGTTCAACGCACCAATAACTGCGCACAATGAGCGTGCTGTTAACCACTCTACAGAGCAACGTCAGGCT ATTGAAGCAATCAAGCGTCACTATGTGTACCAAGAAACACAGAACTACGATCACCCGCAAGCACAGCTTGATATACAAGC GTTTAAAGATGCTGCTGTCACCGCACAAAACGAGATCAACGCTAATCAGGCACGTATCGATGCGATAAAGGCTGAACTTA ATAACACTAAACAGGGAGCGCATAGTCTAAACGACAACTTGCGACAGTATTTCGGTAAGACTGATATAAAGATTAAGCCT GTAGGTGCTACATATAAATTCATGCGTGAAGATCGAGAGGCAAAGCACTTATCTGATGGTGAACGTACTGCAATAGCATT TGCGTACTTCATTACACAGTTAGAAGATGAATCCTTAAATGGGATCAAACCTATCGTGTATTTGGATGATCCGATCTGTA GCCTTGATTCAAACCACATTTATAACGTTCTTGGCATTATCAAAAGTAAACTAGGTCATGAGCACGTAGAACAGCTTTTC ATTTCTACGCATAACTTTGAGTTCTTCAACTTAGTAAAAACGTGGTTGTCCCATTTCAGTAGAACTAAGACGGGCACAGC AAAGAGAGCACAGTTCTTCTTAGTTAATCGTACAGGCGACCAATCTAAGATTGACCCATTACCTAAGCTACTTAAAGACC ACAGATCCGAGTATGCTTACTTGATCAGCAAGGTTAAAGAAGCTGTAGAACGACCAGAGAATTGTGATTCTATTGCAGTG CAGTCGTACGTAAGAAAGATACTGGAAGTGTACTTTTCGTTCCGATTCAATCTGACTGAGTTCAGGGGTAACGGTAAAGA CCAGATAGCACCTAATCTACTGAAAGATATTGAAGGTGCGGAAGTTAAAGCAAATACTTTGTATGAATACATGAATGAAA AATGCCATGCTAAGTCAATGGAGCTAGGCGTTCAGTTCCCCGAAGCTGTGCAGCCGCAGTTAACTAACGCATGGGAGATC ATTACAAACGCCTTAGAAACGAACGACAAGCCACACTATGACGCATATTATGCCTAA
Upstream 100 bases:
>100_bases TCAAACGCCCTATTAAATTAAGCAACTAAATTGATAGCAGTCACATCCAATCTTAGATAATGCATAGTAGAATGAAGAGT CACCTATTTGGGGTATGTGC
Downstream 100 bases:
>100_bases CTCTAGGGAATCACGTCATTTGTTTTCTTATTAACTTATCATGATGCTTTGCAGTAAAGAGGTGCTATTGAAATATCAAA ATAATAAAGAAGACCAATCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 738; Mature: 738
Protein sequence:
>738_residues MFKNIKSIKNFGIFKDANTNAGQPFYQFNLFYGFNYSGKTTLSRVFLAMQLGEIPEGFTGASFEVDCHEASSIKSNNLQK VENLRVFNSDYIAKNVNFDESSVSPVLIVGERNIELETELQGLEEVIPTKEVNRDQNTGFAASKEKEKNNRLTEVGRNVA VLSILGRSTFNASSVRTMLASAEASHDLTPEQMSAYIDTARASAVSSVPKVKLSTPEMKDILGEIESIMATSVTQTTIAE LDADKSLRSWVEEGIERNAGHTTCQFCHNTISQARIDELNAYFSEAYKDLSQRIDVAIASVQSQAFTSSIPDTSQLYPDL QKGFDELRIQIQPIDDSVEELKTSLVKLLTDKKEHMSEVLPFNASDYPLPLVTDLMEQFNAPITAHNERAVNHSTEQRQA IEAIKRHYVYQETQNYDHPQAQLDIQAFKDAAVTAQNEINANQARIDAIKAELNNTKQGAHSLNDNLRQYFGKTDIKIKP VGATYKFMREDREAKHLSDGERTAIAFAYFITQLEDESLNGIKPIVYLDDPICSLDSNHIYNVLGIIKSKLGHEHVEQLF ISTHNFEFFNLVKTWLSHFSRTKTGTAKRAQFFLVNRTGDQSKIDPLPKLLKDHRSEYAYLISKVKEAVERPENCDSIAV QSYVRKILEVYFSFRFNLTEFRGNGKDQIAPNLLKDIEGAEVKANTLYEYMNEKCHAKSMELGVQFPEAVQPQLTNAWEI ITNALETNDKPHYDAYYA
Sequences:
>Translated_738_residues MFKNIKSIKNFGIFKDANTNAGQPFYQFNLFYGFNYSGKTTLSRVFLAMQLGEIPEGFTGASFEVDCHEASSIKSNNLQK VENLRVFNSDYIAKNVNFDESSVSPVLIVGERNIELETELQGLEEVIPTKEVNRDQNTGFAASKEKEKNNRLTEVGRNVA VLSILGRSTFNASSVRTMLASAEASHDLTPEQMSAYIDTARASAVSSVPKVKLSTPEMKDILGEIESIMATSVTQTTIAE LDADKSLRSWVEEGIERNAGHTTCQFCHNTISQARIDELNAYFSEAYKDLSQRIDVAIASVQSQAFTSSIPDTSQLYPDL QKGFDELRIQIQPIDDSVEELKTSLVKLLTDKKEHMSEVLPFNASDYPLPLVTDLMEQFNAPITAHNERAVNHSTEQRQA IEAIKRHYVYQETQNYDHPQAQLDIQAFKDAAVTAQNEINANQARIDAIKAELNNTKQGAHSLNDNLRQYFGKTDIKIKP VGATYKFMREDREAKHLSDGERTAIAFAYFITQLEDESLNGIKPIVYLDDPICSLDSNHIYNVLGIIKSKLGHEHVEQLF ISTHNFEFFNLVKTWLSHFSRTKTGTAKRAQFFLVNRTGDQSKIDPLPKLLKDHRSEYAYLISKVKEAVERPENCDSIAV QSYVRKILEVYFSFRFNLTEFRGNGKDQIAPNLLKDIEGAEVKANTLYEYMNEKCHAKSMELGVQFPEAVQPQLTNAWEI ITNALETNDKPHYDAYYA >Mature_738_residues MFKNIKSIKNFGIFKDANTNAGQPFYQFNLFYGFNYSGKTTLSRVFLAMQLGEIPEGFTGASFEVDCHEASSIKSNNLQK VENLRVFNSDYIAKNVNFDESSVSPVLIVGERNIELETELQGLEEVIPTKEVNRDQNTGFAASKEKEKNNRLTEVGRNVA VLSILGRSTFNASSVRTMLASAEASHDLTPEQMSAYIDTARASAVSSVPKVKLSTPEMKDILGEIESIMATSVTQTTIAE LDADKSLRSWVEEGIERNAGHTTCQFCHNTISQARIDELNAYFSEAYKDLSQRIDVAIASVQSQAFTSSIPDTSQLYPDL QKGFDELRIQIQPIDDSVEELKTSLVKLLTDKKEHMSEVLPFNASDYPLPLVTDLMEQFNAPITAHNERAVNHSTEQRQA IEAIKRHYVYQETQNYDHPQAQLDIQAFKDAAVTAQNEINANQARIDAIKAELNNTKQGAHSLNDNLRQYFGKTDIKIKP VGATYKFMREDREAKHLSDGERTAIAFAYFITQLEDESLNGIKPIVYLDDPICSLDSNHIYNVLGIIKSKLGHEHVEQLF ISTHNFEFFNLVKTWLSHFSRTKTGTAKRAQFFLVNRTGDQSKIDPLPKLLKDHRSEYAYLISKVKEAVERPENCDSIAV QSYVRKILEVYFSFRFNLTEFRGNGKDQIAPNLLKDIEGAEVKANTLYEYMNEKCHAKSMELGVQFPEAVQPQLTNAWEI ITNALETNDKPHYDAYYA
Specific function: Unknown
COG id: COG4694
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 83367; Mature: 83367
Theoretical pI: Translated: 5.31; Mature: 5.31
Prosite motif: PS00012 PHOSPHOPANTETHEINE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFKNIKSIKNFGIFKDANTNAGQPFYQFNLFYGFNYSGKTTLSRVFLAMQLGEIPEGFTG CCCCHHHHHHCCCEECCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCC ASFEVDCHEASSIKSNNLQKVENLRVFNSDYIAKNVNFDESSVSPVLIVGERNIELETEL CCEEEECCHHCCCCCCCHHHHHHHHEECCCHHEECCCCCCCCCCCEEEECCCCCCHHHHH QGLEEVIPTKEVNRDQNTGFAASKEKEKNNRLTEVGRNVAVLSILGRSTFNASSVRTMLA HHHHHHCCCHHCCCCCCCCCCCCCHHHHCCHHHHHCCCEEEEHHHCCCCCCHHHHHHHHH SAEASHDLTPEQMSAYIDTARASAVSSVPKVKLSTPEMKDILGEIESIMATSVTQTTIAE HHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHH LDADKSLRSWVEEGIERNAGHTTCQFCHNTISQARIDELNAYFSEAYKDLSQRIDVAIAS HCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VQSQAFTSSIPDTSQLYPDLQKGFDELRIQIQPIDDSVEELKTSLVKLLTDKKEHMSEVL HHHHHHHCCCCCHHHHCHHHHCCHHHEEEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHC PFNASDYPLPLVTDLMEQFNAPITAHNERAVNHSTEQRQAIEAIKRHYVYQETQNYDHPQ CCCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCH AQLDIQAFKDAAVTAQNEINANQARIDAIKAELNNTKQGAHSLNDNLRQYFGKTDIKIKP HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEE VGATYKFMREDREAKHLSDGERTAIAFAYFITQLEDESLNGIKPIVYLDDPICSLDSNHI CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCHH YNVLGIIKSKLGHEHVEQLFISTHNFEFFNLVKTWLSHFSRTKTGTAKRAQFFLVNRTGD HHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCC QSKIDPLPKLLKDHRSEYAYLISKVKEAVERPENCDSIAVQSYVRKILEVYFSFRFNLTE CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHH FRGNGKDQIAPNLLKDIEGAEVKANTLYEYMNEKCHAKSMELGVQFPEAVQPQLTNAWEI HCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHH ITNALETNDKPHYDAYYA HHHHHHCCCCCCCCCCCC >Mature Secondary Structure MFKNIKSIKNFGIFKDANTNAGQPFYQFNLFYGFNYSGKTTLSRVFLAMQLGEIPEGFTG CCCCHHHHHHCCCEECCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCC ASFEVDCHEASSIKSNNLQKVENLRVFNSDYIAKNVNFDESSVSPVLIVGERNIELETEL CCEEEECCHHCCCCCCCHHHHHHHHEECCCHHEECCCCCCCCCCCEEEECCCCCCHHHHH QGLEEVIPTKEVNRDQNTGFAASKEKEKNNRLTEVGRNVAVLSILGRSTFNASSVRTMLA HHHHHHCCCHHCCCCCCCCCCCCCHHHHCCHHHHHCCCEEEEHHHCCCCCCHHHHHHHHH SAEASHDLTPEQMSAYIDTARASAVSSVPKVKLSTPEMKDILGEIESIMATSVTQTTIAE HHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHH LDADKSLRSWVEEGIERNAGHTTCQFCHNTISQARIDELNAYFSEAYKDLSQRIDVAIAS HCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VQSQAFTSSIPDTSQLYPDLQKGFDELRIQIQPIDDSVEELKTSLVKLLTDKKEHMSEVL HHHHHHHCCCCCHHHHCHHHHCCHHHEEEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHC PFNASDYPLPLVTDLMEQFNAPITAHNERAVNHSTEQRQAIEAIKRHYVYQETQNYDHPQ CCCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCH AQLDIQAFKDAAVTAQNEINANQARIDAIKAELNNTKQGAHSLNDNLRQYFGKTDIKIKP HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEE VGATYKFMREDREAKHLSDGERTAIAFAYFITQLEDESLNGIKPIVYLDDPICSLDSNHI CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCHH YNVLGIIKSKLGHEHVEQLFISTHNFEFFNLVKTWLSHFSRTKTGTAKRAQFFLVNRTGD HHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCC QSKIDPLPKLLKDHRSEYAYLISKVKEAVERPENCDSIAVQSYVRKILEVYFSFRFNLTE CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHH FRGNGKDQIAPNLLKDIEGAEVKANTLYEYMNEKCHAKSMELGVQFPEAVQPQLTNAWEI HCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHH ITNALETNDKPHYDAYYA HHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA