| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624103
Identifier: 167624103
GI number: 167624103
Start: 2634252
End: 2635220
Strand: Direct
Name: 167624103
Synonym: Shal_2179
Alternate gene names: NA
Gene position: 2634252-2635220 (Clockwise)
Preceding gene: 167624102
Following gene: 167624104
Centisome position: 50.4
GC content: 36.22
Gene sequence:
>969_bases ATGGCGATTTTCGATTTATTTTCATCAAGGCAAAAAAAAGCCCGAGGTGACGTGCCTGATGTCTATCTGTATGACTCTAT TCCAGATAAATTGAGAGTTCAAATTGTGCATATTATCAAAGCAACAATTGGAACTAGGGTAAATAATAGTCACTATGGAG GAGAAACATATTCTGAAGTCGTATATCGTGAAATTCACGAGATTTTATGCAAAGAATACGGTGTTTTTTCATTATCCCAA AAGCATAGAATAAGTCACTTTGAAGCAGTCTATGATTATTTTTTATACTCTGAGGATTTCGAAGAATGCTTAGATATTAT TGAGCTGTCATTTAAATTCATTGAGTTCCACGTCAAAGGAAAGCAATATCAATTTACACATGAAGAAGGAACCAAACAAG AAGCAAATGACGCAATTGACGAGTTAAATCAGAGGTTCAAAGAGTCAGGCGTTGGCTATGAGTTCCTTTCTGGCGAGATT ATTAGAATTGATTCTCAATTCATTCATAGTGAGGTAGTAAAACCTACTCTGTCAATTTTACAAGGTGAAAATATTTTTAA TGGAGCAAGAGATGAGTTCTTATCCGCTCACTCCCATTACCGAAGTCAACGTTATAAAGAGGCTCTTGTAGATTGCTTGA AATCGTTTGAAAGTACCATGAAAGCAATATGTGAGAAGCATGGCTGGCAGTTTGGTAAAAATGACACCGCAAAAAAATTA ATAAATGTTTGCCTCACTAATAATCTTATTCCTGTTTACATGCAAGAGCAGTTTAGCCAGTTTCGAGCTTTGCTTGAAAG TGGGGTTCCAACAGTAAGAAATAAAGAAGGTGGTCATGGGCAAGGTTCTGAAATAAAGAACGTATCGGAAACCATGGTTA GCTATACATTGCACCTAACTGCAACCAATATTGTTTTTTTGGGCGAATGCGAAAAGAAAGTTAACAAGGCAAAACAAGCA GACGCATAA
Upstream 100 bases:
>100_bases CAGTTGGCTAAGTTCCGCTTCGCATCACATTATAGCTAACAATTTTTGCCCGCTTAAGCGGGCGTTAACTTTCAGTGAAA CTTTATCGCAAGGAACAAAG
Downstream 100 bases:
>100_bases CAGCAGTCACTGTTTTCGTCAAAACAAAAAGCCGCCAAAAACAACGCCAACCTATACGCTGTTTTTGGCGGCGTTATACG TTTCGGTCAGTTTGGAGTAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 322; Mature: 321
Protein sequence:
>322_residues MAIFDLFSSRQKKARGDVPDVYLYDSIPDKLRVQIVHIIKATIGTRVNNSHYGGETYSEVVYREIHEILCKEYGVFSLSQ KHRISHFEAVYDYFLYSEDFEECLDIIELSFKFIEFHVKGKQYQFTHEEGTKQEANDAIDELNQRFKESGVGYEFLSGEI IRIDSQFIHSEVVKPTLSILQGENIFNGARDEFLSAHSHYRSQRYKEALVDCLKSFESTMKAICEKHGWQFGKNDTAKKL INVCLTNNLIPVYMQEQFSQFRALLESGVPTVRNKEGGHGQGSEIKNVSETMVSYTLHLTATNIVFLGECEKKVNKAKQA DA
Sequences:
>Translated_322_residues MAIFDLFSSRQKKARGDVPDVYLYDSIPDKLRVQIVHIIKATIGTRVNNSHYGGETYSEVVYREIHEILCKEYGVFSLSQ KHRISHFEAVYDYFLYSEDFEECLDIIELSFKFIEFHVKGKQYQFTHEEGTKQEANDAIDELNQRFKESGVGYEFLSGEI IRIDSQFIHSEVVKPTLSILQGENIFNGARDEFLSAHSHYRSQRYKEALVDCLKSFESTMKAICEKHGWQFGKNDTAKKL INVCLTNNLIPVYMQEQFSQFRALLESGVPTVRNKEGGHGQGSEIKNVSETMVSYTLHLTATNIVFLGECEKKVNKAKQA DA >Mature_321_residues AIFDLFSSRQKKARGDVPDVYLYDSIPDKLRVQIVHIIKATIGTRVNNSHYGGETYSEVVYREIHEILCKEYGVFSLSQK HRISHFEAVYDYFLYSEDFEECLDIIELSFKFIEFHVKGKQYQFTHEEGTKQEANDAIDELNQRFKESGVGYEFLSGEII RIDSQFIHSEVVKPTLSILQGENIFNGARDEFLSAHSHYRSQRYKEALVDCLKSFESTMKAICEKHGWQFGKNDTAKKLI NVCLTNNLIPVYMQEQFSQFRALLESGVPTVRNKEGGHGQGSEIKNVSETMVSYTLHLTATNIVFLGECEKKVNKAKQAD A
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36989; Mature: 36858
Theoretical pI: Translated: 6.32; Mature: 6.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIFDLFSSRQKKARGDVPDVYLYDSIPDKLRVQIVHIIKATIGTRVNNSHYGGETYSEV CCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH VYREIHEILCKEYGVFSLSQKHRISHFEAVYDYFLYSEDFEECLDIIELSFKFIEFHVKG HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC KQYQFTHEEGTKQEANDAIDELNQRFKESGVGYEFLSGEIIRIDSQFIHSEVVKPTLSIL CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEHHCCCEEEECHHHHHHHHHHHHHHHH QGENIFNGARDEFLSAHSHYRSQRYKEALVDCLKSFESTMKAICEKHGWQFGKNDTAKKL CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH INVCLTNNLIPVYMQEQFSQFRALLESGVPTVRNKEGGHGQGSEIKNVSETMVSYTLHLT HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEE ATNIVFLGECEKKVNKAKQADA EEEEEEEEHHHHHHHHHHCCCC >Mature Secondary Structure AIFDLFSSRQKKARGDVPDVYLYDSIPDKLRVQIVHIIKATIGTRVNNSHYGGETYSEV CHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH VYREIHEILCKEYGVFSLSQKHRISHFEAVYDYFLYSEDFEECLDIIELSFKFIEFHVKG HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC KQYQFTHEEGTKQEANDAIDELNQRFKESGVGYEFLSGEIIRIDSQFIHSEVVKPTLSIL CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEHHCCCEEEECHHHHHHHHHHHHHHHH QGENIFNGARDEFLSAHSHYRSQRYKEALVDCLKSFESTMKAICEKHGWQFGKNDTAKKL CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH INVCLTNNLIPVYMQEQFSQFRALLESGVPTVRNKEGGHGQGSEIKNVSETMVSYTLHLT HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEE ATNIVFLGECEKKVNKAKQADA EEEEEEEEHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA