| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is corA [H]
Identifier: 167623979
GI number: 167623979
Start: 2474892
End: 2475839
Strand: Reverse
Name: corA [H]
Synonym: Shal_2053
Alternate gene names: 167623979
Gene position: 2475839-2474892 (Counterclockwise)
Preceding gene: 167623981
Following gene: 167623968
Centisome position: 47.37
GC content: 38.92
Gene sequence:
>948_bases ATGATCACTGCGTATTGCTACGAGAATCATCAAATAATTACAACAATTCTTAATATTGAAGATCCTTTACCTGAAACAAC AATTTGGTTAGATATTTATCGACCCATTGAAGCAGAAAGACACTGGTTGGCCGGATTTTCCGCCGATAAGGTTCCTAATA GAGAAGACAAAAATGAAATTGAAGCCTCTTCACGCTTTTACCAGAACAAAGATGGTTTACACGTTAACTCATTATTTAGT CAAAAGTCTGGACGGACGCTAAGCTCGGTGAATATTTATTTTAACCTCAGAGAACACTTATTACTCACCATGCGAGATGA CGATGAGCGTTTAATAGACTCATTAGTCCCACACCTTCAAAACCTCCAATCCCCTCTTATTACACCACAGCAGTTATTCA TTGAGCTTTTCAAAATGAAAGTCGACCATTTAGCCGATCTTATTGAAGAGGTCTATCGGGCTTTAGACAATGTTGGGCAT GAAGTCTTTGAAAAAGATCGAATCGATGAGGTGTTTCAACTGATCACAATAAGAGAAGACACTAATGGTAAAATTCGCTT GAATTTACTCGATACGCAACGCACGCTGAATTACATGCTACGAGATTATCAAAATAAACTGTCTAAAGAGGAAACTAAGG ACATCAGTAATATGCTGTCTGATCTCGCATCGTTAATACCACATACGCAGTTTCTGTTCGAAAAGCTGAACTTTTTAATG GATGCAGCCATGGGCTTTACAGGCTTACAGCAAAATAAAATCAGCAAAATTTTCTCCGTCGCGGCGGTAGTGTTTCTTCC TCCAACCTTAATAGCAAGCACATACGGTATGAACTTTGATGATATGCCAGAGGTACATTGGCACTATGGCTATCCTTGGT CCATAGCACTTATGTTCGCAAGTGCTGCTGCAACCTTTTTGTTTTTCAAAGTAAAACGTTGGTTATAG
Upstream 100 bases:
>100_bases ATTTATTCCATATTTAGATGCTTTATCTTTGCAATCATTGACTAAAATATTTAATTATATGGATATTGACTAACACTTAC TCTTTTGCGATGGGAACAAT
Downstream 100 bases:
>100_bases TCACTTTGTTGCAAGACAGCGGGTCTCAATGGCAACGATGATTTCATGAATGCAATACGCCACGTTTTGCAGTGGCGATA TAAGCTGCTGTTATATTGAA
Product: magnesium and cobalt transport protein CorA
Products: Ni2; [Cytoplasm]; Co; 2 [Cytoplasm]; Mg (II) [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 315; Mature: 315
Protein sequence:
>315_residues MITAYCYENHQIITTILNIEDPLPETTIWLDIYRPIEAERHWLAGFSADKVPNREDKNEIEASSRFYQNKDGLHVNSLFS QKSGRTLSSVNIYFNLREHLLLTMRDDDERLIDSLVPHLQNLQSPLITPQQLFIELFKMKVDHLADLIEEVYRALDNVGH EVFEKDRIDEVFQLITIREDTNGKIRLNLLDTQRTLNYMLRDYQNKLSKEETKDISNMLSDLASLIPHTQFLFEKLNFLM DAAMGFTGLQQNKISKIFSVAAVVFLPPTLIASTYGMNFDDMPEVHWHYGYPWSIALMFASAAATFLFFKVKRWL
Sequences:
>Translated_315_residues MITAYCYENHQIITTILNIEDPLPETTIWLDIYRPIEAERHWLAGFSADKVPNREDKNEIEASSRFYQNKDGLHVNSLFS QKSGRTLSSVNIYFNLREHLLLTMRDDDERLIDSLVPHLQNLQSPLITPQQLFIELFKMKVDHLADLIEEVYRALDNVGH EVFEKDRIDEVFQLITIREDTNGKIRLNLLDTQRTLNYMLRDYQNKLSKEETKDISNMLSDLASLIPHTQFLFEKLNFLM DAAMGFTGLQQNKISKIFSVAAVVFLPPTLIASTYGMNFDDMPEVHWHYGYPWSIALMFASAAATFLFFKVKRWL >Mature_315_residues MITAYCYENHQIITTILNIEDPLPETTIWLDIYRPIEAERHWLAGFSADKVPNREDKNEIEASSRFYQNKDGLHVNSLFS QKSGRTLSSVNIYFNLREHLLLTMRDDDERLIDSLVPHLQNLQSPLITPQQLFIELFKMKVDHLADLIEEVYRALDNVGH EVFEKDRIDEVFQLITIREDTNGKIRLNLLDTQRTLNYMLRDYQNKLSKEETKDISNMLSDLASLIPHTQFLFEKLNFLM DAAMGFTGLQQNKISKIFSVAAVVFLPPTLIASTYGMNFDDMPEVHWHYGYPWSIALMFASAAATFLFFKVKRWL
Specific function: Mediates influx of magnesium ions [H]
COG id: COG0598
COG function: function code P; Mg2+ and Co2+ transporters
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family [H]
Homologues:
Organism=Escherichia coli, GI2367297, Length=323, Percent_Identity=37.1517027863777, Blast_Score=217, Evalue=8e-58,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004488 - InterPro: IPR002523 [H]
Pfam domain/function: PF01544 CorA [H]
EC number: NA
Molecular weight: Translated: 36747; Mature: 36747
Theoretical pI: Translated: 5.22; Mature: 5.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITAYCYENHQIITTILNIEDPLPETTIWLDIYRPIEAERHWLAGFSADKVPNREDKNEI CEEEEEECCCEEEEEEEECCCCCCCCEEEEEEECCHHHHHHHHCCCCCCCCCCCCCHHHH EASSRFYQNKDGLHVNSLFSQKSGRTLSSVNIYFNLREHLLLTMRDDDERLIDSLVPHLQ HHHHHHHCCCCCCCHHHHHHHCCCCEEEEEEEEEEEHHHEEEEECCCHHHHHHHHHHHHH NLQSPLITPQQLFIELFKMKVDHLADLIEEVYRALDNVGHEVFEKDRIDEVFQLITIRED HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEC TNGKIRLNLLDTQRTLNYMLRDYQNKLSKEETKDISNMLSDLASLIPHTQFLFEKLNFLM CCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH DAAMGFTGLQQNKISKIFSVAAVVFLPPTLIASTYGMNFDDMPEVHWHYGYPWSIALMFA HHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCEECCCCHHHHHHHH SAAATFLFFKVKRWL HHHHHHHHHHHHHCC >Mature Secondary Structure MITAYCYENHQIITTILNIEDPLPETTIWLDIYRPIEAERHWLAGFSADKVPNREDKNEI CEEEEEECCCEEEEEEEECCCCCCCCEEEEEEECCHHHHHHHHCCCCCCCCCCCCCHHHH EASSRFYQNKDGLHVNSLFSQKSGRTLSSVNIYFNLREHLLLTMRDDDERLIDSLVPHLQ HHHHHHHCCCCCCCHHHHHHHCCCCEEEEEEEEEEEHHHEEEEECCCHHHHHHHHHHHHH NLQSPLITPQQLFIELFKMKVDHLADLIEEVYRALDNVGHEVFEKDRIDEVFQLITIRED HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEC TNGKIRLNLLDTQRTLNYMLRDYQNKLSKEETKDISNMLSDLASLIPHTQFLFEKLNFLM CCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH DAAMGFTGLQQNKISKIFSVAAVVFLPPTLIASTYGMNFDDMPEVHWHYGYPWSIALMFA HHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCEECCCCHHHHHHHH SAAATFLFFKVKRWL HHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Ni2; [Periplasm]; Co; 2 [Periplasm]; Mg (II) [Periplasm] [C]
Specific reaction: Ni2+ [Periplasm] = Ni2+ [Cytoplasm] Co+2 [Periplasm] = Co+2 [Cytoplasm] Mg (II) [Periplasm] = Mg (II) [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 14528314 [H]