| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167623951
Identifier: 167623951
GI number: 167623951
Start: 2442071
End: 2443198
Strand: Direct
Name: 167623951
Synonym: Shal_2025
Alternate gene names: NA
Gene position: 2442071-2443198 (Clockwise)
Preceding gene: 167623949
Following gene: 167623952
Centisome position: 46.72
GC content: 45.66
Gene sequence:
>1128_bases ATGCGTATTACCGCGAATTTTGATAGTGGCAATATTGAAGTTATCAATCAGGATAATAAAGATGATATTCAGTTAGCGAT CCGTCCGGATGAAGGCGGTGAGTTTTTTCAGTGGTTTAACTTCAAGCTAGAAGGCGTAGTTGGCTCCCAGTACATACTCA ATATCGTTAACGCTGACAAAGCTTCTTACACCAAGGGCTGGGAAGACTACCAAGCGGTAGCAACGTACGACAGACAAAAC TGGTTTAGACTGCCCACCCAGTACAAGGACGGTAAGCTAACGATTCAAGTCGACTTAGATTGCGATGCGATTCAGATTTC GTACTTCGCACCATACAGCTACGAGCGTCATCAGGATCTATTGGCTGCAGTTCAGGTGCATCCACAAGTGAGTCTTGAGC ATCTTGGTTTGACGCTAGATGGTCGCGATATGACTTTGGTTAAGATTGGCGACGGTGATGAAGAGAAAGCCAATATCTGG ATCACAGCGCGTCAGCACCCAGGTGAAACGATGGCCGAGTGGCTAGTTGAAGGCTTGATAAACAACTTGCTTGATAGTGA TTGCCCTACAGCCAAAGCACTATTGGATAAAGCTAACTTCTACATCGTTCCCAACATGAACCCTGACGGGAGTGCTCGTG GACATCTGCGTACTAATGCCGTGGGCACAAACTTAAATCGTGAATGGAAAACGCCTTCACTAGAGAAGAGCCCTGAAGTG CTACACGTGGTTAATAAGATGAAAGAGACCGGTGTGGATCTTTTTTATGATGTGCATGGTGATGAAGGCTTACCGTATGT GTTTTTAGCGGGTTGTGAAGGTGTTCCAGCCTTTACCGAAAAAGACGCAGCGCTCCAACAAGCATTTGTTGATGCACTAT TGATGGCGAGTCCCGACTTCCAGAACGAGTTTGGTTATGACAAAGATGCACCGGGACAAGCTAACTTAACTGTGGCGTCA AACTGGGTCGCTCACACCTTTGGCTGTCTTTCAAATACACTTGAAATGCCATTTAAAGACAATGCCAATATGCCAGACCT TATGGCAGGCTGGTCCCCTGAGCGTTGTATTTATCTTGGTGAAGCATCGTTAATTGCGATGAACGCAGTGGTTGATAAAC TTAAATAA
Upstream 100 bases:
>100_bases ATTTTGGTTTATTCTATATCGCAAAGATCGACCGTCGGCTTGTTTGCAGCGTCAAAGCATAAAGAGTCAAATCGTATAAG CAAAAGTAAAAGGAAGTGTT
Downstream 100 bases:
>100_bases GTGGATGCGGTAAACTAAGAGGTAGCCAATGGCATTAGTGAATTGTCCTAGCTGTAATAAACGTATATCGAGCATGGCTA AAGAGTGTAATCATTGTAAG
Product: peptidase M14 carboxypeptidase A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 375; Mature: 375
Protein sequence:
>375_residues MRITANFDSGNIEVINQDNKDDIQLAIRPDEGGEFFQWFNFKLEGVVGSQYILNIVNADKASYTKGWEDYQAVATYDRQN WFRLPTQYKDGKLTIQVDLDCDAIQISYFAPYSYERHQDLLAAVQVHPQVSLEHLGLTLDGRDMTLVKIGDGDEEKANIW ITARQHPGETMAEWLVEGLINNLLDSDCPTAKALLDKANFYIVPNMNPDGSARGHLRTNAVGTNLNREWKTPSLEKSPEV LHVVNKMKETGVDLFYDVHGDEGLPYVFLAGCEGVPAFTEKDAALQQAFVDALLMASPDFQNEFGYDKDAPGQANLTVAS NWVAHTFGCLSNTLEMPFKDNANMPDLMAGWSPERCIYLGEASLIAMNAVVDKLK
Sequences:
>Translated_375_residues MRITANFDSGNIEVINQDNKDDIQLAIRPDEGGEFFQWFNFKLEGVVGSQYILNIVNADKASYTKGWEDYQAVATYDRQN WFRLPTQYKDGKLTIQVDLDCDAIQISYFAPYSYERHQDLLAAVQVHPQVSLEHLGLTLDGRDMTLVKIGDGDEEKANIW ITARQHPGETMAEWLVEGLINNLLDSDCPTAKALLDKANFYIVPNMNPDGSARGHLRTNAVGTNLNREWKTPSLEKSPEV LHVVNKMKETGVDLFYDVHGDEGLPYVFLAGCEGVPAFTEKDAALQQAFVDALLMASPDFQNEFGYDKDAPGQANLTVAS NWVAHTFGCLSNTLEMPFKDNANMPDLMAGWSPERCIYLGEASLIAMNAVVDKLK >Mature_375_residues MRITANFDSGNIEVINQDNKDDIQLAIRPDEGGEFFQWFNFKLEGVVGSQYILNIVNADKASYTKGWEDYQAVATYDRQN WFRLPTQYKDGKLTIQVDLDCDAIQISYFAPYSYERHQDLLAAVQVHPQVSLEHLGLTLDGRDMTLVKIGDGDEEKANIW ITARQHPGETMAEWLVEGLINNLLDSDCPTAKALLDKANFYIVPNMNPDGSARGHLRTNAVGTNLNREWKTPSLEKSPEV LHVVNKMKETGVDLFYDVHGDEGLPYVFLAGCEGVPAFTEKDAALQQAFVDALLMASPDFQNEFGYDKDAPGQANLTVAS NWVAHTFGCLSNTLEMPFKDNANMPDLMAGWSPERCIYLGEASLIAMNAVVDKLK
Specific function: Unknown
COG id: COG2866
COG function: function code E; Predicted carboxypeptidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI190194403, Length=320, Percent_Identity=31.25, Blast_Score=120, Evalue=2e-27, Organism=Homo sapiens, GI222352158, Length=340, Percent_Identity=29.1176470588235, Blast_Score=107, Evalue=2e-23, Organism=Homo sapiens, GI170763513, Length=322, Percent_Identity=27.9503105590062, Blast_Score=106, Evalue=4e-23, Organism=Homo sapiens, GI31657119, Length=303, Percent_Identity=29.3729372937294, Blast_Score=102, Evalue=4e-22, Organism=Homo sapiens, GI120444924, Length=322, Percent_Identity=28.8819875776398, Blast_Score=100, Evalue=3e-21, Organism=Homo sapiens, GI78482633, Length=289, Percent_Identity=26.2975778546713, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI118421091, Length=289, Percent_Identity=26.2975778546713, Blast_Score=74, Evalue=3e-13, Organism=Caenorhabditis elegans, GI115533904, Length=363, Percent_Identity=27.5482093663912, Blast_Score=112, Evalue=5e-25, Organism=Caenorhabditis elegans, GI193202888, Length=281, Percent_Identity=25.2669039145907, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI24641847, Length=317, Percent_Identity=27.4447949526814, Blast_Score=104, Evalue=9e-23, Organism=Drosophila melanogaster, GI28571179, Length=313, Percent_Identity=27.7955271565495, Blast_Score=104, Evalue=1e-22, Organism=Drosophila melanogaster, GI161077807, Length=317, Percent_Identity=27.4447949526814, Blast_Score=104, Evalue=1e-22, Organism=Drosophila melanogaster, GI24641845, Length=317, Percent_Identity=27.4447949526814, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI24651466, Length=274, Percent_Identity=27.3722627737226, Blast_Score=80, Evalue=3e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000834 [H]
Pfam domain/function: PF00246 Peptidase_M14 [H]
EC number: NA
Molecular weight: Translated: 41898; Mature: 41898
Theoretical pI: Translated: 4.34; Mature: 4.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRITANFDSGNIEVINQDNKDDIQLAIRPDEGGEFFQWFNFKLEGVVGSQYILNIVNADK CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEEEECCCEEEEEECCCC ASYTKGWEDYQAVATYDRQNWFRLPTQYKDGKLTIQVDLDCDAIQISYFAPYSYERHQDL CCCCCCCHHHHHHEEECCCCEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHH LAAVQVHPQVSLEHLGLTLDGRDMTLVKIGDGDEEKANIWITARQHPGETMAEWLVEGLI HHHHHCCCCEEHHHEEEEECCCCEEEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHHH NNLLDSDCPTAKALLDKANFYIVPNMNPDGSARGHLRTNAVGTNLNREWKTPSLEKSPEV HHHHCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHH LHVVNKMKETGVDLFYDVHGDEGLPYVFLAGCEGVPAFTEKDAALQQAFVDALLMASPDF HHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCC QNEFGYDKDAPGQANLTVASNWVAHTFGCLSNTLEMPFKDNANMPDLMAGWSPERCIYLG CHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCEEEEC EASLIAMNAVVDKLK CCCEEHHHHHHHHCC >Mature Secondary Structure MRITANFDSGNIEVINQDNKDDIQLAIRPDEGGEFFQWFNFKLEGVVGSQYILNIVNADK CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEEEECCCEEEEEECCCC ASYTKGWEDYQAVATYDRQNWFRLPTQYKDGKLTIQVDLDCDAIQISYFAPYSYERHQDL CCCCCCCHHHHHHEEECCCCEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHH LAAVQVHPQVSLEHLGLTLDGRDMTLVKIGDGDEEKANIWITARQHPGETMAEWLVEGLI HHHHHCCCCEEHHHEEEEECCCCEEEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHHH NNLLDSDCPTAKALLDKANFYIVPNMNPDGSARGHLRTNAVGTNLNREWKTPSLEKSPEV HHHHCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHH LHVVNKMKETGVDLFYDVHGDEGLPYVFLAGCEGVPAFTEKDAALQQAFVDALLMASPDF HHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCC QNEFGYDKDAPGQANLTVASNWVAHTFGCLSNTLEMPFKDNANMPDLMAGWSPERCIYLG CHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCEEEEC EASLIAMNAVVDKLK CCCEEHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8320209 [H]