Definition Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession NC_010334
Length 5,226,917

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The map label for this gene is 167623951

Identifier: 167623951

GI number: 167623951

Start: 2442071

End: 2443198

Strand: Direct

Name: 167623951

Synonym: Shal_2025

Alternate gene names: NA

Gene position: 2442071-2443198 (Clockwise)

Preceding gene: 167623949

Following gene: 167623952

Centisome position: 46.72

GC content: 45.66

Gene sequence:

>1128_bases
ATGCGTATTACCGCGAATTTTGATAGTGGCAATATTGAAGTTATCAATCAGGATAATAAAGATGATATTCAGTTAGCGAT
CCGTCCGGATGAAGGCGGTGAGTTTTTTCAGTGGTTTAACTTCAAGCTAGAAGGCGTAGTTGGCTCCCAGTACATACTCA
ATATCGTTAACGCTGACAAAGCTTCTTACACCAAGGGCTGGGAAGACTACCAAGCGGTAGCAACGTACGACAGACAAAAC
TGGTTTAGACTGCCCACCCAGTACAAGGACGGTAAGCTAACGATTCAAGTCGACTTAGATTGCGATGCGATTCAGATTTC
GTACTTCGCACCATACAGCTACGAGCGTCATCAGGATCTATTGGCTGCAGTTCAGGTGCATCCACAAGTGAGTCTTGAGC
ATCTTGGTTTGACGCTAGATGGTCGCGATATGACTTTGGTTAAGATTGGCGACGGTGATGAAGAGAAAGCCAATATCTGG
ATCACAGCGCGTCAGCACCCAGGTGAAACGATGGCCGAGTGGCTAGTTGAAGGCTTGATAAACAACTTGCTTGATAGTGA
TTGCCCTACAGCCAAAGCACTATTGGATAAAGCTAACTTCTACATCGTTCCCAACATGAACCCTGACGGGAGTGCTCGTG
GACATCTGCGTACTAATGCCGTGGGCACAAACTTAAATCGTGAATGGAAAACGCCTTCACTAGAGAAGAGCCCTGAAGTG
CTACACGTGGTTAATAAGATGAAAGAGACCGGTGTGGATCTTTTTTATGATGTGCATGGTGATGAAGGCTTACCGTATGT
GTTTTTAGCGGGTTGTGAAGGTGTTCCAGCCTTTACCGAAAAAGACGCAGCGCTCCAACAAGCATTTGTTGATGCACTAT
TGATGGCGAGTCCCGACTTCCAGAACGAGTTTGGTTATGACAAAGATGCACCGGGACAAGCTAACTTAACTGTGGCGTCA
AACTGGGTCGCTCACACCTTTGGCTGTCTTTCAAATACACTTGAAATGCCATTTAAAGACAATGCCAATATGCCAGACCT
TATGGCAGGCTGGTCCCCTGAGCGTTGTATTTATCTTGGTGAAGCATCGTTAATTGCGATGAACGCAGTGGTTGATAAAC
TTAAATAA

Upstream 100 bases:

>100_bases
ATTTTGGTTTATTCTATATCGCAAAGATCGACCGTCGGCTTGTTTGCAGCGTCAAAGCATAAAGAGTCAAATCGTATAAG
CAAAAGTAAAAGGAAGTGTT

Downstream 100 bases:

>100_bases
GTGGATGCGGTAAACTAAGAGGTAGCCAATGGCATTAGTGAATTGTCCTAGCTGTAATAAACGTATATCGAGCATGGCTA
AAGAGTGTAATCATTGTAAG

Product: peptidase M14 carboxypeptidase A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MRITANFDSGNIEVINQDNKDDIQLAIRPDEGGEFFQWFNFKLEGVVGSQYILNIVNADKASYTKGWEDYQAVATYDRQN
WFRLPTQYKDGKLTIQVDLDCDAIQISYFAPYSYERHQDLLAAVQVHPQVSLEHLGLTLDGRDMTLVKIGDGDEEKANIW
ITARQHPGETMAEWLVEGLINNLLDSDCPTAKALLDKANFYIVPNMNPDGSARGHLRTNAVGTNLNREWKTPSLEKSPEV
LHVVNKMKETGVDLFYDVHGDEGLPYVFLAGCEGVPAFTEKDAALQQAFVDALLMASPDFQNEFGYDKDAPGQANLTVAS
NWVAHTFGCLSNTLEMPFKDNANMPDLMAGWSPERCIYLGEASLIAMNAVVDKLK

Sequences:

>Translated_375_residues
MRITANFDSGNIEVINQDNKDDIQLAIRPDEGGEFFQWFNFKLEGVVGSQYILNIVNADKASYTKGWEDYQAVATYDRQN
WFRLPTQYKDGKLTIQVDLDCDAIQISYFAPYSYERHQDLLAAVQVHPQVSLEHLGLTLDGRDMTLVKIGDGDEEKANIW
ITARQHPGETMAEWLVEGLINNLLDSDCPTAKALLDKANFYIVPNMNPDGSARGHLRTNAVGTNLNREWKTPSLEKSPEV
LHVVNKMKETGVDLFYDVHGDEGLPYVFLAGCEGVPAFTEKDAALQQAFVDALLMASPDFQNEFGYDKDAPGQANLTVAS
NWVAHTFGCLSNTLEMPFKDNANMPDLMAGWSPERCIYLGEASLIAMNAVVDKLK
>Mature_375_residues
MRITANFDSGNIEVINQDNKDDIQLAIRPDEGGEFFQWFNFKLEGVVGSQYILNIVNADKASYTKGWEDYQAVATYDRQN
WFRLPTQYKDGKLTIQVDLDCDAIQISYFAPYSYERHQDLLAAVQVHPQVSLEHLGLTLDGRDMTLVKIGDGDEEKANIW
ITARQHPGETMAEWLVEGLINNLLDSDCPTAKALLDKANFYIVPNMNPDGSARGHLRTNAVGTNLNREWKTPSLEKSPEV
LHVVNKMKETGVDLFYDVHGDEGLPYVFLAGCEGVPAFTEKDAALQQAFVDALLMASPDFQNEFGYDKDAPGQANLTVAS
NWVAHTFGCLSNTLEMPFKDNANMPDLMAGWSPERCIYLGEASLIAMNAVVDKLK

Specific function: Unknown

COG id: COG2866

COG function: function code E; Predicted carboxypeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI190194403, Length=320, Percent_Identity=31.25, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI222352158, Length=340, Percent_Identity=29.1176470588235, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI170763513, Length=322, Percent_Identity=27.9503105590062, Blast_Score=106, Evalue=4e-23,
Organism=Homo sapiens, GI31657119, Length=303, Percent_Identity=29.3729372937294, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI120444924, Length=322, Percent_Identity=28.8819875776398, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI78482633, Length=289, Percent_Identity=26.2975778546713, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI118421091, Length=289, Percent_Identity=26.2975778546713, Blast_Score=74, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI115533904, Length=363, Percent_Identity=27.5482093663912, Blast_Score=112, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI193202888, Length=281, Percent_Identity=25.2669039145907, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24641847, Length=317, Percent_Identity=27.4447949526814, Blast_Score=104, Evalue=9e-23,
Organism=Drosophila melanogaster, GI28571179, Length=313, Percent_Identity=27.7955271565495, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI161077807, Length=317, Percent_Identity=27.4447949526814, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24641845, Length=317, Percent_Identity=27.4447949526814, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24651466, Length=274, Percent_Identity=27.3722627737226, Blast_Score=80, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000834 [H]

Pfam domain/function: PF00246 Peptidase_M14 [H]

EC number: NA

Molecular weight: Translated: 41898; Mature: 41898

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRITANFDSGNIEVINQDNKDDIQLAIRPDEGGEFFQWFNFKLEGVVGSQYILNIVNADK
CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEEEECCCEEEEEECCCC
ASYTKGWEDYQAVATYDRQNWFRLPTQYKDGKLTIQVDLDCDAIQISYFAPYSYERHQDL
CCCCCCCHHHHHHEEECCCCEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHH
LAAVQVHPQVSLEHLGLTLDGRDMTLVKIGDGDEEKANIWITARQHPGETMAEWLVEGLI
HHHHHCCCCEEHHHEEEEECCCCEEEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHHH
NNLLDSDCPTAKALLDKANFYIVPNMNPDGSARGHLRTNAVGTNLNREWKTPSLEKSPEV
HHHHCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHH
LHVVNKMKETGVDLFYDVHGDEGLPYVFLAGCEGVPAFTEKDAALQQAFVDALLMASPDF
HHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
QNEFGYDKDAPGQANLTVASNWVAHTFGCLSNTLEMPFKDNANMPDLMAGWSPERCIYLG
CHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCEEEEC
EASLIAMNAVVDKLK
CCCEEHHHHHHHHCC
>Mature Secondary Structure
MRITANFDSGNIEVINQDNKDDIQLAIRPDEGGEFFQWFNFKLEGVVGSQYILNIVNADK
CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEEEECCCEEEEEECCCC
ASYTKGWEDYQAVATYDRQNWFRLPTQYKDGKLTIQVDLDCDAIQISYFAPYSYERHQDL
CCCCCCCHHHHHHEEECCCCEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHHHH
LAAVQVHPQVSLEHLGLTLDGRDMTLVKIGDGDEEKANIWITARQHPGETMAEWLVEGLI
HHHHHCCCCEEHHHEEEEECCCCEEEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHHH
NNLLDSDCPTAKALLDKANFYIVPNMNPDGSARGHLRTNAVGTNLNREWKTPSLEKSPEV
HHHHCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHH
LHVVNKMKETGVDLFYDVHGDEGLPYVFLAGCEGVPAFTEKDAALQQAFVDALLMASPDF
HHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
QNEFGYDKDAPGQANLTVASNWVAHTFGCLSNTLEMPFKDNANMPDLMAGWSPERCIYLG
CHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCEEEEC
EASLIAMNAVVDKLK
CCCEEHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8320209 [H]