Definition Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession NC_010334
Length 5,226,917

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The map label for this gene is yghU [H]

Identifier: 167623913

GI number: 167623913

Start: 2392284

End: 2392949

Strand: Reverse

Name: yghU [H]

Synonym: Shal_1984

Alternate gene names: 167623913

Gene position: 2392949-2392284 (Counterclockwise)

Preceding gene: 167623914

Following gene: 167623910

Centisome position: 45.78

GC content: 37.84

Gene sequence:

>666_bases
ATGTCTGATATTCAACTTTACTCACTAGGCTCACCTAATGGAATTAAAATTCCAATCGCGCTCGAAGAAATGGGAATGAG
CTATGATGCCCACACGGTTGATATTTTAAAGGGTGAACAGTTTAGTAAAGAGTTTACAAAGATAAATCCAAACTCAAAGA
TACCAGCAATCATTGATACTGAGGGGCCGCAAGGGCAACCTATTTCGATAATGGAATCAGGTGCAATTTTACTATATTTG
GCAGAGAAATCAGGAAAGTTAATTCCACAGAACCCAAGACAAAGGTGTGAGACAATTCAGTGGCTTTTCTTTCAGGCAAG
CGCTGTTGGGCCAATGTTTGGAGCCTTTGGTCATTTTCATACTTACGGTAAAGAAAATTGTGACCACCCTTACCCTGAAG
CAAGATTTGCGAATGAAACCAAGCGTCTACTATCCATTTTAGATGAAAGACTTCAAAATCGTATTTATATTGTTGGTGAT
GAATATAGTATCGCTGATATATCTATTTTCCCTTGGGTAATTTGGCTAGATATATTTTATAAGGCTGCTAAACAACTTGA
GCTTGGATCATATAAAAATGTAATGGCTTGGGTTGAGCGATGTAGATCAAGACCTGCAACAATAAAAGGCCTTAATGTGT
ATGGGTTCAATGAGATAGGCAAATAA

Upstream 100 bases:

>100_bases
GAATTCGTCAGATTGCTCAACTCTTATAAATGTATCTAGACTGGTAGGGTAATCTTAGAAAGTAGAAATTAATAAAACGA
TATAATTAGGAGGAACTAAG

Downstream 100 bases:

>100_bases
AACACTAAATTTTTAAAGTCCCAGACAGATATATAATTGGTATTACAGCATCCTATAATCCTGTTAATAATTTTGTGAAA
CTACCTCACAATACATTGAC

Product: glutathione S-transferase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MSDIQLYSLGSPNGIKIPIALEEMGMSYDAHTVDILKGEQFSKEFTKINPNSKIPAIIDTEGPQGQPISIMESGAILLYL
AEKSGKLIPQNPRQRCETIQWLFFQASAVGPMFGAFGHFHTYGKENCDHPYPEARFANETKRLLSILDERLQNRIYIVGD
EYSIADISIFPWVIWLDIFYKAAKQLELGSYKNVMAWVERCRSRPATIKGLNVYGFNEIGK

Sequences:

>Translated_221_residues
MSDIQLYSLGSPNGIKIPIALEEMGMSYDAHTVDILKGEQFSKEFTKINPNSKIPAIIDTEGPQGQPISIMESGAILLYL
AEKSGKLIPQNPRQRCETIQWLFFQASAVGPMFGAFGHFHTYGKENCDHPYPEARFANETKRLLSILDERLQNRIYIVGD
EYSIADISIFPWVIWLDIFYKAAKQLELGSYKNVMAWVERCRSRPATIKGLNVYGFNEIGK
>Mature_220_residues
SDIQLYSLGSPNGIKIPIALEEMGMSYDAHTVDILKGEQFSKEFTKINPNSKIPAIIDTEGPQGQPISIMESGAILLYLA
EKSGKLIPQNPRQRCETIQWLFFQASAVGPMFGAFGHFHTYGKENCDHPYPEARFANETKRLLSILDERLQNRIYIVGDE
YSIADISIFPWVIWLDIFYKAAKQLELGSYKNVMAWVERCRSRPATIKGLNVYGFNEIGK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GST N-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI87082195, Length=216, Percent_Identity=46.2962962962963, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1788640, Length=210, Percent_Identity=44.7619047619048, Blast_Score=173, Evalue=8e-45,
Organism=Saccharomyces cerevisiae, GI6324100, Length=239, Percent_Identity=28.4518828451883, Blast_Score=98, Evalue=1e-21,
Organism=Drosophila melanogaster, GI17864592, Length=207, Percent_Identity=26.5700483091787, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI28571670, Length=183, Percent_Identity=27.8688524590164, Blast_Score=80, Evalue=8e-16,
Organism=Drosophila melanogaster, GI45549270, Length=184, Percent_Identity=29.8913043478261, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI17864598, Length=183, Percent_Identity=30.0546448087432, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI85725204, Length=203, Percent_Identity=26.6009852216749, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI17737923, Length=203, Percent_Identity=26.6009852216749, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI20129811, Length=197, Percent_Identity=25.3807106598985, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI17864594, Length=200, Percent_Identity=27, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24646249, Length=200, Percent_Identity=26.5, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24654979, Length=209, Percent_Identity=25.3588516746411, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI17933730, Length=206, Percent_Identity=24.7572815533981, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI19922526, Length=208, Percent_Identity=27.8846153846154, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24654965, Length=211, Percent_Identity=27.9620853080569, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24646251, Length=199, Percent_Identity=26.1306532663317, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010987
- InterPro:   IPR004045
- InterPro:   IPR017933
- InterPro:   IPR004046
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00043 GST_C; PF02798 GST_N [H]

EC number: NA

Molecular weight: Translated: 25029; Mature: 24898

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDIQLYSLGSPNGIKIPIALEEMGMSYDAHTVDILKGEQFSKEFTKINPNSKIPAIIDT
CCCEEEEECCCCCCEEEEEEHHHHCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEC
EGPQGQPISIMESGAILLYLAEKSGKLIPQNPRQRCETIQWLFFQASAVGPMFGAFGHFH
CCCCCCCEEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
TYGKENCDHPYPEARFANETKRLLSILDERLQNRIYIVGDEYSIADISIFPWVIWLDIFY
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEHHHHHHHHHHHHHH
KAAKQLELGSYKNVMAWVERCRSRPATIKGLNVYGFNEIGK
HHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC
>Mature Secondary Structure 
SDIQLYSLGSPNGIKIPIALEEMGMSYDAHTVDILKGEQFSKEFTKINPNSKIPAIIDT
CCEEEEECCCCCCEEEEEEHHHHCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEC
EGPQGQPISIMESGAILLYLAEKSGKLIPQNPRQRCETIQWLFFQASAVGPMFGAFGHFH
CCCCCCCEEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
TYGKENCDHPYPEARFANETKRLLSILDERLQNRIYIVGDEYSIADISIFPWVIWLDIFY
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEHHHHHHHHHHHHHH
KAAKQLELGSYKNVMAWVERCRSRPATIKGLNVYGFNEIGK
HHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]