| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167623836
Identifier: 167623836
GI number: 167623836
Start: 2289747
End: 2290058
Strand: Direct
Name: 167623836
Synonym: Shal_1906
Alternate gene names: NA
Gene position: 2289747-2290058 (Clockwise)
Preceding gene: 167623835
Following gene: 167623838
Centisome position: 43.81
GC content: 37.5
Gene sequence:
>312_bases ATGGATGTGAATGGTAGTCGAGTTAAATTTGATTACCATGGCTTGTCGGGTACCTTGATGGTGACCTGCGAAGGCAGTAT CGTGTTTAAAAAGTTCTTATGGCTACCTTATAAACGCTACTCTGTGACTATTGCTAAGCAAACGTATCAGATTAAGGCAC TACTATTTCCTTTTAATAATATCGGTTTATATCAAGGAAAACAGGTTATCTGTAAGTCGCTTTTTCCGCGATTAAAATAT ACAGGTATTGTGACCTTTAGTTTGAGTTGTATTAAGCGCTTAGGGCTATTTTTAGCACTGATGATGGGATAG
Upstream 100 bases:
>100_bases CTGGGTGGTAGCTCTGGTATTTAGGTTAATAGTGTGAGTTTCGCTAAAGTAAAATCAATCGAATGGATGCATTGATAATA TGTTTAAACAGGGAAAAGCT
Downstream 100 bases:
>100_bases TTATTAAATTACAGGTAGGAGGCTAGGATGCCATCACTGCAGAAGAAAATGGAACAACACCTTTTTTTGTCAATGTAAGC ATTGTCAGAGTAAGCTGGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 103; Mature: 103
Protein sequence:
>103_residues MDVNGSRVKFDYHGLSGTLMVTCEGSIVFKKFLWLPYKRYSVTIAKQTYQIKALLFPFNNIGLYQGKQVICKSLFPRLKY TGIVTFSLSCIKRLGLFLALMMG
Sequences:
>Translated_103_residues MDVNGSRVKFDYHGLSGTLMVTCEGSIVFKKFLWLPYKRYSVTIAKQTYQIKALLFPFNNIGLYQGKQVICKSLFPRLKY TGIVTFSLSCIKRLGLFLALMMG >Mature_103_residues MDVNGSRVKFDYHGLSGTLMVTCEGSIVFKKFLWLPYKRYSVTIAKQTYQIKALLFPFNNIGLYQGKQVICKSLFPRLKY TGIVTFSLSCIKRLGLFLALMMG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11757; Mature: 11757
Theoretical pI: Translated: 10.42; Mature: 10.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 6.8 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 6.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDVNGSRVKFDYHGLSGTLMVTCEGSIVFKKFLWLPYKRYSVTIAKQTYQIKALLFPFNN CCCCCCEEEEEECCCCCEEEEEECCCEEEEHHHCCCCCCEEEEEECCEEEEEEEEEECCC IGLYQGKQVICKSLFPRLKYTGIVTFSLSCIKRLGLFLALMMG CCCCCCHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHCC >Mature Secondary Structure MDVNGSRVKFDYHGLSGTLMVTCEGSIVFKKFLWLPYKRYSVTIAKQTYQIKALLFPFNN CCCCCCEEEEEECCCCCEEEEEECCCEEEEHHHCCCCCCEEEEEECCEEEEEEEEEECCC IGLYQGKQVICKSLFPRLKYTGIVTFSLSCIKRLGLFLALMMG CCCCCCHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA