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The map label for this gene is cdd

Identifier: 167623713

GI number: 167623713

Start: 2133527

End: 2134417

Strand: Reverse

Name: cdd

Synonym: Shal_1783

Alternate gene names: 167623713

Gene position: 2134417-2133527 (Counterclockwise)

Preceding gene: 167623714

Following gene: 167623701

Centisome position: 40.84

GC content: 44.33

Gene sequence:

>891_bases
ATGCAAGACCGGTTCTTAAAAAGCATAGCTAAGTTACCAGAGCCACTAGCAACCGCTATCGTACCATTGCTCGATAAAGA
CTTTGCAGGTCATATCGATGCCCAGCAATTAGAAGTGCTTCAAATTGCAAGCAAAATGGAGCTAAATGAACTGCTTTTAG
CCCTGCTCCCCATTGCTGCTGCGTTAGCAAGACCACCTATTAGCGAGTTTCACGTAGGTGCTATCGCCAAAGGTAAGAGC
GGTGATATCTATATGGGCGCTAATATTGAACTCCCCGGTGAAGCACTTTTTCACTCTGTTCATGCAGAACAAAGCGCAAT
TAGCCATGCATGGCTAAGCGGTGAAAGCATTATTGAAGACATCATAGTCAATGCATCCCCTTGTGGACATTGTCGTCAAT
TCATCAATGAGTTGGTTGATGGCAGTAAGGTTAAAATCCATCTTCCTGCTCAAAAAATTGAGCCGTTAGCACACTACTTA
CCTTATGCATTCGGGCCAAGTGACTTAAACATTACCGAGCCTTTGTTGACGAAACAGCAACATACACTGACTTTAGATTC
TAATGATCCGATGATTATTGAAGCACTCGATCATGCCGGTCTAAGTTATGCCCCATACACCAAGAACTATGCTTCTGTCG
TACTTGAGACCAAAGACGGCGCAACCTATTGTGGTCGTTATGCAGAAAATGCAGCATTTAATCCATCAATGCAGCCAATG
CAGATGGCATTATCGACTATGGCGCGTCATAACCGCGATTTCAGCGAGATCAACCGTGCCGTATTGATTGAGTCTTCTAA
AGGTGTGATTTCATTGGTAGGCGCTGCAATGGATGCTCTACACAGCGTTGCAGTTGTTGAACTCGAACATATCGTTGTAG
AGCCTGAGTAA

Upstream 100 bases:

>100_bases
TATAGGCTTTATAGGCGACAACTGAGATCTTCATCTCATTCTAGATGTAACAAGCTTACTAGAATGATACTTCATTGGTG
TTAATAAAAGGAAATAGCAT

Downstream 100 bases:

>100_bases
CTGACCTCAGGACGGCTAGGCTTGTGTGACTAAAAAGGACCATATAAATGGTCCTTTTTTATTGGTTACTTTAAACTAGA
ATCTTAACCTCGATTCTTCT

Product: cytidine deaminase

Products: NA

Alternate protein names: Cytidine aminohydrolase; CDA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MQDRFLKSIAKLPEPLATAIVPLLDKDFAGHIDAQQLEVLQIASKMELNELLLALLPIAAALARPPISEFHVGAIAKGKS
GDIYMGANIELPGEALFHSVHAEQSAISHAWLSGESIIEDIIVNASPCGHCRQFINELVDGSKVKIHLPAQKIEPLAHYL
PYAFGPSDLNITEPLLTKQQHTLTLDSNDPMIIEALDHAGLSYAPYTKNYASVVLETKDGATYCGRYAENAAFNPSMQPM
QMALSTMARHNRDFSEINRAVLIESSKGVISLVGAAMDALHSVAVVELEHIVVEPE

Sequences:

>Translated_296_residues
MQDRFLKSIAKLPEPLATAIVPLLDKDFAGHIDAQQLEVLQIASKMELNELLLALLPIAAALARPPISEFHVGAIAKGKS
GDIYMGANIELPGEALFHSVHAEQSAISHAWLSGESIIEDIIVNASPCGHCRQFINELVDGSKVKIHLPAQKIEPLAHYL
PYAFGPSDLNITEPLLTKQQHTLTLDSNDPMIIEALDHAGLSYAPYTKNYASVVLETKDGATYCGRYAENAAFNPSMQPM
QMALSTMARHNRDFSEINRAVLIESSKGVISLVGAAMDALHSVAVVELEHIVVEPE
>Mature_296_residues
MQDRFLKSIAKLPEPLATAIVPLLDKDFAGHIDAQQLEVLQIASKMELNELLLALLPIAAALARPPISEFHVGAIAKGKS
GDIYMGANIELPGEALFHSVHAEQSAISHAWLSGESIIEDIIVNASPCGHCRQFINELVDGSKVKIHLPAQKIEPLAHYL
PYAFGPSDLNITEPLLTKQQHTLTLDSNDPMIIEALDHAGLSYAPYTKNYASVVLETKDGATYCGRYAENAAFNPSMQPM
QMALSTMARHNRDFSEINRAVLIESSKGVISLVGAAMDALHSVAVVELEHIVVEPE

Specific function: This enzyme scavenge exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis

COG id: COG0295

COG function: function code F; Cytidine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytidine and deoxycytidylate deaminase family

Homologues:

Organism=Escherichia coli, GI1788465, Length=294, Percent_Identity=43.5374149659864, Blast_Score=218, Evalue=4e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CDD_SHEHH (B0TQV3)

Other databases:

- EMBL:   CP000931
- RefSeq:   YP_001674007.1
- ProteinModelPortal:   B0TQV3
- SMR:   B0TQV3
- GeneID:   5903050
- GenomeReviews:   CP000931_GR
- KEGG:   shl:Shal_1783
- HOGENOM:   HBG591160
- OMA:   NRSHAPY
- ProtClustDB:   PRK09027
- BioCyc:   SHAL458817:SHAL_1783-MONOMER
- HAMAP:   MF_01558
- InterPro:   IPR016192
- InterPro:   IPR002125
- InterPro:   IPR013171
- InterPro:   IPR006263
- InterPro:   IPR016193
- InterPro:   IPR020797
- PIRSF:   PIRSF006334

Pfam domain/function: PF00383 dCMP_cyt_deam_1; PF08211 dCMP_cyt_deam_2; SSF53927 Cytidine_deaminase-like

EC number: =3.5.4.5

Molecular weight: Translated: 32144; Mature: 32144

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS00903 CYT_DCMP_DEAMINASES

Important sites: ACT_SITE 103-103

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDRFLKSIAKLPEPLATAIVPLLDKDFAGHIDAQQLEVLQIASKMELNELLLALLPIAA
CCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALARPPISEFHVGAIAKGKSGDIYMGANIELPGEALFHSVHAEQSAISHAWLSGESIIED
HHHCCCHHHHCCCEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
IIVNASPCGHCRQFINELVDGSKVKIHLPAQKIEPLAHYLPYAFGPSDLNITEPLLTKQQ
HHCCCCCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCC
HTLTLDSNDPMIIEALDHAGLSYAPYTKNYASVVLETKDGATYCGRYAENAAFNPSMQPM
CEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCHHH
QMALSTMARHNRDFSEINRAVLIESSKGVISLVGAAMDALHSVAVVELEHIVVEPE
HHHHHHHHHCCCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHEEEEEEEECCC
>Mature Secondary Structure
MQDRFLKSIAKLPEPLATAIVPLLDKDFAGHIDAQQLEVLQIASKMELNELLLALLPIAA
CCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALARPPISEFHVGAIAKGKSGDIYMGANIELPGEALFHSVHAEQSAISHAWLSGESIIED
HHHCCCHHHHCCCEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
IIVNASPCGHCRQFINELVDGSKVKIHLPAQKIEPLAHYLPYAFGPSDLNITEPLLTKQQ
HHCCCCCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCC
HTLTLDSNDPMIIEALDHAGLSYAPYTKNYASVVLETKDGATYCGRYAENAAFNPSMQPM
CEEEECCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCHHH
QMALSTMARHNRDFSEINRAVLIESSKGVISLVGAAMDALHSVAVVELEHIVVEPE
HHHHHHHHHCCCCHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA