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The map label for this gene is ydeF [H]

Identifier: 167623657

GI number: 167623657

Start: 2069334

End: 2070695

Strand: Reverse

Name: ydeF [H]

Synonym: Shal_1726

Alternate gene names: 167623657

Gene position: 2070695-2069334 (Counterclockwise)

Preceding gene: 167623659

Following gene: 167623655

Centisome position: 39.62

GC content: 44.35

Gene sequence:

>1362_bases
ATGGGTACAATCTGGAGTCCAAACTTAGCAGACTACACAGGGGCTAAATATTTACGTCTGGCGCAGGCAGCAGAAGATGC
CATAAAAAACGGGGAGCTATTGCCGAATAGCAAATTACCGCCCCAAAGGTTACTTGCGGATAAATTAGGATTCACAGTCG
GTACAGTCACCCGTGCCTATGCACTACTTGAGCAACGCGGGTATGTGCAAGCTAAAGTGGGTGCTGGTACTTACGTTAAA
GCCAGCGATAATCAAGCATCCGATCAGAGTGCAAACTTCGCCACCTGCCAACAGCCTTTCACTAACCAAACCGCTGTGTT
AAGTGATGCTCTTAATCTGCTAGCAAAAAGCCCCCAGCGTTTGGCTCAATTGATGCGATACCATGCCGAGCCGCTACAAG
AACATCAACTCAAGTTTAGCCAATGGCTACATCGACGTGATATCAAACAAACACCTGAGCAGATAGTATTTACTCATGGT
GGTCAACAGGGGATCTTTTCAATTCTCAATGGCTTGATGCAATCGGGTGAATCGCTACTTTGCGAAGCGAGTTGTTACCC
GGGGATCCATGTTGCTGCAGAGCAGTTAGGATTAAAAACAGTACCCGTGACTTTGACTGATGAAGGCTTAAACTTGGATG
AACTGCAACAAAAAATCATTCAGTACAAGCCTAAAGTGCTCTATTTGACGCCAAACAATCAAAACCCAACCTGTATTCAA
TACAGCGACTATCAACGTAAAGCGATTATTACTTTAGCCAAAAATCATCAAGTCATCATTATCGAAGATGATGTGAATTA
CTGCCTTGCTAATGAATGGCGCACACCTATGTGGTCACTCGACCAACTAGCGAGTGAGGATGAGCAATGCGTGATTTATT
TATCAAGCTTATCGAAAATGTTCTGCGGCGGATTACGACAAGGCTTTTTGCTCATTCCAAGCAAGTTTATTGGCTCAGTA
AAGCAAGCTCTTTACAGTCAGTGCTGGATGGTATCGTCACTCAATACCGAACTTGCCTGTAGAGTCATTGAAAACAACGA
TTTTATGGGGCAACGTGAGCAGCAGATTATTGATAGGCAAGCACTGAGTATTGCAATGGGGCAACGACTTAAACTTAAAC
AAAGCTGGCGCGGTCTCAATGGTTGGCTGCAACTCAAAACCCCGCTAAAGGCACACCATGTAGTGACCGCCCTAGCGCAA
AAAGGCATACTCATTCGTAATGGCGATGACTTTAATAATCATGAAAACTACATTCGCCTCAGCATTGGCGGGAGCAGTGA
TGACAACGAATTTATTGAGCAGTTAATAATGATTGAACACACTATACGCTCTCTTAGTCAAAGCGCTTACTCCGTTGTTT
AA

Upstream 100 bases:

>100_bases
CTTTCTACCTCACACAATTGTATGCATACAAAAATTGACACAAAGCGCTTAAGTTACGCATAATAATCAATACAAAGTTG
AATACAATGGTTTTATTGTC

Downstream 100 bases:

>100_bases
ACAATTTGTTAACTGCTATAGCTTTCGGGCTTGCTCTATAGAGTCTTCTTAATTACGGTCATGTAAACTTAAGCCAAAGG
CAAAATTGACACAAAAAAAC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 453; Mature: 452

Protein sequence:

>453_residues
MGTIWSPNLADYTGAKYLRLAQAAEDAIKNGELLPNSKLPPQRLLADKLGFTVGTVTRAYALLEQRGYVQAKVGAGTYVK
ASDNQASDQSANFATCQQPFTNQTAVLSDALNLLAKSPQRLAQLMRYHAEPLQEHQLKFSQWLHRRDIKQTPEQIVFTHG
GQQGIFSILNGLMQSGESLLCEASCYPGIHVAAEQLGLKTVPVTLTDEGLNLDELQQKIIQYKPKVLYLTPNNQNPTCIQ
YSDYQRKAIITLAKNHQVIIIEDDVNYCLANEWRTPMWSLDQLASEDEQCVIYLSSLSKMFCGGLRQGFLLIPSKFIGSV
KQALYSQCWMVSSLNTELACRVIENNDFMGQREQQIIDRQALSIAMGQRLKLKQSWRGLNGWLQLKTPLKAHHVVTALAQ
KGILIRNGDDFNNHENYIRLSIGGSSDDNEFIEQLIMIEHTIRSLSQSAYSVV

Sequences:

>Translated_453_residues
MGTIWSPNLADYTGAKYLRLAQAAEDAIKNGELLPNSKLPPQRLLADKLGFTVGTVTRAYALLEQRGYVQAKVGAGTYVK
ASDNQASDQSANFATCQQPFTNQTAVLSDALNLLAKSPQRLAQLMRYHAEPLQEHQLKFSQWLHRRDIKQTPEQIVFTHG
GQQGIFSILNGLMQSGESLLCEASCYPGIHVAAEQLGLKTVPVTLTDEGLNLDELQQKIIQYKPKVLYLTPNNQNPTCIQ
YSDYQRKAIITLAKNHQVIIIEDDVNYCLANEWRTPMWSLDQLASEDEQCVIYLSSLSKMFCGGLRQGFLLIPSKFIGSV
KQALYSQCWMVSSLNTELACRVIENNDFMGQREQQIIDRQALSIAMGQRLKLKQSWRGLNGWLQLKTPLKAHHVVTALAQ
KGILIRNGDDFNNHENYIRLSIGGSSDDNEFIEQLIMIEHTIRSLSQSAYSVV
>Mature_452_residues
GTIWSPNLADYTGAKYLRLAQAAEDAIKNGELLPNSKLPPQRLLADKLGFTVGTVTRAYALLEQRGYVQAKVGAGTYVKA
SDNQASDQSANFATCQQPFTNQTAVLSDALNLLAKSPQRLAQLMRYHAEPLQEHQLKFSQWLHRRDIKQTPEQIVFTHGG
QQGIFSILNGLMQSGESLLCEASCYPGIHVAAEQLGLKTVPVTLTDEGLNLDELQQKIIQYKPKVLYLTPNNQNPTCIQY
SDYQRKAIITLAKNHQVIIIEDDVNYCLANEWRTPMWSLDQLASEDEQCVIYLSSLSKMFCGGLRQGFLLIPSKFIGSVK
QALYSQCWMVSSLNTELACRVIENNDFMGQREQQIIDRQALSIAMGQRLKLKQSWRGLNGWLQLKTPLKAHHVVTALAQK
GILIRNGDDFNNHENYIRLSIGGSSDDNEFIEQLIMIEHTIRSLSQSAYSVV

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=300, Percent_Identity=25.6666666666667, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI33469970, Length=300, Percent_Identity=25.6666666666667, Blast_Score=85, Evalue=1e-16,
Organism=Escherichia coli, GI1787710, Length=451, Percent_Identity=25.9423503325942, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1790797, Length=356, Percent_Identity=23.876404494382, Blast_Score=84, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6321236, Length=224, Percent_Identity=25.4464285714286, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 50821; Mature: 50690

Theoretical pI: Translated: 7.49; Mature: 7.49

Prosite motif: PS50949 HTH_GNTR ; PS00050 RIBOSOMAL_L23

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTIWSPNLADYTGAKYLRLAQAAEDAIKNGELLPNSKLPPQRLLADKLGFTVGTVTRAY
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHH
ALLEQRGYVQAKVGAGTYVKASDNQASDQSANFATCQQPFTNQTAVLSDALNLLAKSPQR
HHHHHCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHH
LAQLMRYHAEPLQEHQLKFSQWLHRRDIKQTPEQIVFTHGGQQGIFSILNGLMQSGESLL
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHEEEECCCCHHHHHHHHHHHHCCCCEE
CEASCYPGIHVAAEQLGLKTVPVTLTDEGLNLDELQQKIIQYKPKVLYLTPNNQNPTCIQ
EECCCCCCHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCEEE
YSDYQRKAIITLAKNHQVIIIEDDVNYCLANEWRTPMWSLDQLASEDEQCVIYLSSLSKM
ECCCCCEEEEEEECCCEEEEEECCCCCHHHCCCCCCCHHHHHHCCCCCCEEEEHHHHHHH
FCGGLRQGFLLIPSKFIGSVKQALYSQCWMVSSLNTELACRVIENNDFMGQREQQIIDRQ
HHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHH
ALSIAMGQRLKLKQSWRGLNGWLQLKTPLKAHHVVTALAQKGILIRNGDDFNNHENYIRL
HHHHHHCCCHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCEEEECCCCCCCCCCEEEE
SIGGSSDDNEFIEQLIMIEHTIRSLSQSAYSVV
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GTIWSPNLADYTGAKYLRLAQAAEDAIKNGELLPNSKLPPQRLLADKLGFTVGTVTRAY
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHH
ALLEQRGYVQAKVGAGTYVKASDNQASDQSANFATCQQPFTNQTAVLSDALNLLAKSPQR
HHHHHCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHH
LAQLMRYHAEPLQEHQLKFSQWLHRRDIKQTPEQIVFTHGGQQGIFSILNGLMQSGESLL
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHEEEECCCCHHHHHHHHHHHHCCCCEE
CEASCYPGIHVAAEQLGLKTVPVTLTDEGLNLDELQQKIIQYKPKVLYLTPNNQNPTCIQ
EECCCCCCHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCCCEEE
YSDYQRKAIITLAKNHQVIIIEDDVNYCLANEWRTPMWSLDQLASEDEQCVIYLSSLSKM
ECCCCCEEEEEEECCCEEEEEECCCCCHHHCCCCCCCHHHHHHCCCCCCEEEEHHHHHHH
FCGGLRQGFLLIPSKFIGSVKQALYSQCWMVSSLNTELACRVIENNDFMGQREQQIIDRQ
HHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHH
ALSIAMGQRLKLKQSWRGLNGWLQLKTPLKAHHVVTALAQKGILIRNGDDFNNHENYIRL
HHHHHHCCCHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCEEEECCCCCCCCCCEEEE
SIGGSSDDNEFIEQLIMIEHTIRSLSQSAYSVV
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]